RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 ARVCFO00192 962 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 OPLAHO14841 1288 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 DYNC1LI2O43237 492 aaPredicted RBP13.41□□□□□ -0.26
RTN3-209ENST00000538995 CYTH3O43739 400 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 CALM1P0DP23 149 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 CALM2P0DP24 149 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 CALM3P0DP25 149 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 GNAQP50148 359 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 CPT1AP50416 773 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 CDK7P50613 346 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 IRX5P78411 483 aaPredicted RBP13.41□□□□□ -0.26
RTN3-209ENST00000538995 BEX3Q00994 111 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 TSGA10IPQ3SY00 556 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 HOMER1Q86YM7 354 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 TRIM43Q96BQ3 446 aaPredicted RBP13.41□□□□□ -0.26
RTN3-209ENST00000538995 PIGSQ96S52 555 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 RMDN3Q96TC7 470 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 COL20A1Q9P218 1284 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 LTBP2Q14767 1821 aa13.41□□□□□ -0.26
RTN3-209ENST00000538995 SZT2Q5T011 3432 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 CFBP00751 764 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 FAAP100Q0VG06 881 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 KRT32Q14532 448 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 TTLL4Q14679 1199 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 STXBP2Q15833 593 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 BRDTQ58F21 947 aaPredicted RBP13.4□□□□□ -0.26
RTN3-209ENST00000538995 GPR153Q6NV75 609 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 NFXL1Q6ZNB6 911 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 SH3RF1Q7Z6J0 888 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 SGMS1Q86VZ5 419 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 SLC43A3Q8NBI5 491 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 TBC1D5Q92609 795 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 VTI1AQ96AJ9 217 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 TAAR1Q96RJ0 339 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 TMEM39AQ9NV64 488 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 POLR3EQ9NVU0 708 aa13.4□□□□□ -0.26
RTN3-209ENST00000538995 TLR3O15455 904 aaKnown RBP13.39□□□□□ -0.27
RTN3-209ENST00000538995 ARHGEF16Q5VV41 709 aa13.39□□□□□ -0.27
RTN3-209ENST00000538995 ERICH6BQ5W0A0 696 aa13.39□□□□□ -0.27
RTN3-209ENST00000538995 CXCL17Q6UXB2 119 aa13.39□□□□□ -0.27
RTN3-209ENST00000538995 FAM126BQ8IXS8 530 aa13.39□□□□□ -0.27
RTN3-209ENST00000538995 OR6J1Q8NGC5 347 aa13.39□□□□□ -0.27
RTN3-209ENST00000538995 BADQ92934 168 aa13.39□□□□□ -0.27
RTN3-209ENST00000538995 RRP36Q96EU6 259 aaKnown RBP13.39□□□□□ -0.27
RTN3-209ENST00000538995 NEK1Q96PY6 1258 aa13.39□□□□□ -0.27
RTN3-209ENST00000538995 GPHNQ9NQX3 736 aaPredicted RBP13.39□□□□□ -0.27
RTN3-209ENST00000538995 PXMP2Q9NR77 195 aa13.39□□□□□ -0.27
RTN3-209ENST00000538995 TBX21Q9UL17 535 aa13.39□□□□□ -0.27
RTN3-209ENST00000538995 SLC12A7Q9Y666 1083 aa13.39□□□□□ -0.27
RTN3-209ENST00000538995 GCOM1H8Y6P7 765 aaPredicted RBP13.38□□□□□ -0.27
RTN3-209ENST00000538995 SOX1O00570 391 aaPredicted RBP13.38□□□□□ -0.27
RTN3-209ENST00000538995 KPNA6O60684 536 aa13.38□□□□□ -0.27
RTN3-209ENST00000538995 EIF3JO75822 258 aaKnown RBP13.38□□□□□ -0.27
RTN3-209ENST00000538995 HMGB1P09429 215 aaKnown RBP13.38□□□□□ -0.27
RTN3-209ENST00000538995 POLR2MP0CAP2 368 aa13.38□□□□□ -0.27
RTN3-209ENST00000538995 TXNP10599 105 aaKnown RBP13.38□□□□□ -0.27
RTN3-209ENST00000538995 RAG1P15918 1043 aa13.38□□□□□ -0.27
RTN3-209ENST00000538995 TMEM63BQ5T3F8 832 aa13.38□□□□□ -0.27
RTN3-209ENST00000538995 CCDC62Q6P9F0 684 aa13.38□□□□□ -0.27
RTN3-209ENST00000538995 MYL10Q9BUA6 226 aa13.38□□□□□ -0.27
RTN3-209ENST00000538995 SEC63Q9UGP8 760 aaKnown RBP13.38□□□□□ -0.27
RTN3-209ENST00000538995 A6NJR5 290 aa13.37□□□□□ -0.27
RTN3-209ENST00000538995 CD4P01730 458 aa13.37□□□□□ -0.27
RTN3-209ENST00000538995 NR3C2P08235 984 aa13.37□□□□□ -0.27
RTN3-209ENST00000538995 EIF2AK2P19525 551 aaKnown RBP13.37□□□□□ -0.27
RTN3-209ENST00000538995 PTGS1P23219 599 aa13.37□□□□□ -0.27
RTN3-209ENST00000538995 ITGB8P26012 769 aa13.37□□□□□ -0.27
RTN3-209ENST00000538995 PURAQ00577 322 aaKnown RBP13.37□□□□□ -0.27
RTN3-209ENST00000538995 ITGA7Q13683 1181 aa13.37□□□□□ -0.27
RTN3-209ENST00000538995 COL9A3Q14050 684 aaPredicted RBP13.37□□□□□ -0.27
RTN3-209ENST00000538995 DHX32Q7L7V1 743 aaKnown RBP13.37□□□□□ -0.27
RTN3-209ENST00000538995 KCNB2Q92953 911 aa13.37□□□□□ -0.27
RTN3-209ENST00000538995 PDCD2LQ9BRP1 358 aa13.37□□□□□ -0.27
RTN3-209ENST00000538995 FRMPD4Q14CM0 1322 aa13.37□□□□□ -0.27
RTN3-209ENST00000538995 EPB41L2O43491 1005 aaKnown RBP13.36□□□□□ -0.27
RTN3-209ENST00000538995 REC8O95072 547 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 ARIH2O95376 493 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 PLEKHA8P1O95397 391 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 TIMP1P01033 207 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 GH1P01241 217 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 HOXA13P31271 388 aaPredicted RBP13.36□□□□□ -0.27
RTN3-209ENST00000538995 RCAN1P53805 252 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 EXOSC10Q01780 885 aaKnown RBP13.36□□□□□ -0.27
RTN3-209ENST00000538995 FPGSQ05932 587 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 KCNV1Q6PIU1 500 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 APOA5Q6Q788 366 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 SYNE3Q6ZMZ3 975 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 SEPT14Q6ZU15 432 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 TMTC3Q6ZXV5 915 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 RASEFQ8IZ41 740 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 FANCBQ8NB91 859 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 EMID1Q96A84 441 aaPredicted RBP13.36□□□□□ -0.27
RTN3-209ENST00000538995 MTG1Q9BT17 334 aaPredicted RBP13.36□□□□□ -0.27
RTN3-209ENST00000538995 GRIN2DO15399 1336 aa13.36□□□□□ -0.27
RTN3-209ENST00000538995 MYH6P13533 1939 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 PIK3CDO00329 1044 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 STAM2O75886 525 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 MYL3P08590 195 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 CCND2P30279 289 aa13.35□□□□□ -0.27
RTN3-209ENST00000538995 ARHGAP1Q07960 439 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms