RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 MPHOSPH6Q99547 160 aaKnown RBP27.67■■■□□ 2.02
CPSF1-202ENST00000527827 CPVLQ9H3G5 476 aa27.67■■■□□ 2.02
CPSF1-202ENST00000527827 REV3LO60673 3130 aa27.67■■■□□ 2.02
CPSF1-202ENST00000527827 KPNA6O60684 536 aa27.66■■■□□ 2.02
CPSF1-202ENST00000527827 ARIH2O95376 493 aa27.66■■■□□ 2.02
CPSF1-202ENST00000527827 GOLGA8HP0CJ92 632 aa27.66■■■□□ 2.02
CPSF1-202ENST00000527827 TXNP10599 105 aaKnown RBP27.66■■■□□ 2.02
CPSF1-202ENST00000527827 RGS22Q8NE09 1264 aa27.66■■■□□ 2.02
CPSF1-202ENST00000527827 TET1Q8NFU7 2136 aa27.66■■■□□ 2.02
CPSF1-202ENST00000527827 ZKSCAN3Q9BRR0 538 aa27.66■■■□□ 2.02
CPSF1-202ENST00000527827 NEDD4P46934 1319 aa27.66■■■□□ 2.02
CPSF1-202ENST00000527827 LAMA4Q16363 1823 aa27.65■■■□□ 2.02
CPSF1-202ENST00000527827 TRIM6-TRIM34B2RNG4 842 aa27.65■■■□□ 2.02
CPSF1-202ENST00000527827 USH1GQ495M9 461 aa27.65■■■□□ 2.02
CPSF1-202ENST00000527827 GPATCH4Q5T3I0 446 aaKnown RBP27.65■■■□□ 2.02
CPSF1-202ENST00000527827 UBA5Q9GZZ9 404 aa27.65■■■□□ 2.02
CPSF1-202ENST00000527827 TRIP12Q14669 1992 aaPredicted RBP27.65■■■□□ 2.02
CPSF1-202ENST00000527827 TRANK1O15050 2925 aa27.64■■■□□ 2.02
CPSF1-202ENST00000527827 PITPNM1O00562 1244 aa27.64■■■□□ 2.02
CPSF1-202ENST00000527827 IQCF3P0C7M6 154 aa27.64■■■□□ 2.02
CPSF1-202ENST00000527827 RFC2P35250 354 aa27.64■■■□□ 2.02
CPSF1-202ENST00000527827 PTPN11Q06124 597 aaPredicted RBP27.64■■■□□ 2.02
CPSF1-202ENST00000527827 DGKHQ86XP1 1220 aa27.64■■■□□ 2.02
CPSF1-202ENST00000527827 ADAMTS19Q8TE59 1207 aa27.64■■■□□ 2.02
CPSF1-202ENST00000527827 ESR2Q92731 530 aa27.64■■■□□ 2.02
CPSF1-202ENST00000527827 RILPL2Q969X0 211 aa27.64■■■□□ 2.02
CPSF1-202ENST00000527827 LNPKQ9C0E8 428 aa27.64■■■□□ 2.02
CPSF1-202ENST00000527827 RNF41Q9H4P4 317 aaPredicted RBP27.64■■■□□ 2.02
CPSF1-202ENST00000527827 CA3P07451 260 aa27.63■■■□□ 2.01
CPSF1-202ENST00000527827 TMEM67Q5HYA8 995 aa27.63■■■□□ 2.01
CPSF1-202ENST00000527827 CCDC62Q6P9F0 684 aa27.63■■■□□ 2.01
CPSF1-202ENST00000527827 TBC1D5Q92609 795 aa27.63■■■□□ 2.01
CPSF1-202ENST00000527827 KIAA1217Q5T5P2 1943 aa27.63■■■□□ 2.01
CPSF1-202ENST00000527827 PRRC2BQ5JSZ5 2229 aaKnown RBP27.63■■■□□ 2.01
CPSF1-202ENST00000527827 B4DLN1 442 aa27.62■■■□□ 2.01
CPSF1-202ENST00000527827 ACTN1P12814 892 aa27.62■■■□□ 2.01
CPSF1-202ENST00000527827 SDSP20132 328 aa27.62■■■□□ 2.01
CPSF1-202ENST00000527827 MRPL12P52815 198 aaKnown RBP27.62■■■□□ 2.01
CPSF1-202ENST00000527827 MYH6P13533 1939 aa27.61■■■□□ 2.01
CPSF1-202ENST00000527827 RFXAPO00287 272 aa27.61■■■□□ 2.01
CPSF1-202ENST00000527827 CDC37Q16543 378 aaPredicted RBP27.61■■■□□ 2.01
CPSF1-202ENST00000527827 RETREG2Q8NC44 543 aa27.61■■■□□ 2.01
CPSF1-202ENST00000527827 TAAR1Q96RJ0 339 aa27.61■■■□□ 2.01
CPSF1-202ENST00000527827 SLC9A7Q96T83 725 aa27.61■■■□□ 2.01
CPSF1-202ENST00000527827 COL20A1Q9P218 1284 aa27.61■■■□□ 2.01
CPSF1-202ENST00000527827 TCF20Q9UGU0 1960 aaKnown RBP27.6■■■□□ 2.01
CPSF1-202ENST00000527827 BFSP2Q13515 415 aa27.6■■■□□ 2.01
CPSF1-202ENST00000527827 MICALL1Q8N3F8 863 aa27.6■■■□□ 2.01
CPSF1-202ENST00000527827 PNMA1Q8ND90 353 aa27.6■■■□□ 2.01
CPSF1-202ENST00000527827 PHOSPHO2Q8TCD6 241 aa27.6■■■□□ 2.01
CPSF1-202ENST00000527827 SYTL5Q8TDW5 730 aaPredicted RBP27.6■■■□□ 2.01
CPSF1-202ENST00000527827 MAF1Q9H063 256 aa27.6■■■□□ 2.01
CPSF1-202ENST00000527827 PTPRSQ13332 1948 aa27.6■■■□□ 2.01
CPSF1-202ENST00000527827 ZNF213O14771 459 aa27.59■■■□□ 2.01
CPSF1-202ENST00000527827 POU3F3P20264 500 aaPredicted RBP27.59■■■□□ 2.01
CPSF1-202ENST00000527827 MFAP1P55081 439 aaKnown RBP27.59■■■□□ 2.01
CPSF1-202ENST00000527827 ADGRF4Q8IZF3 695 aa27.59■■■□□ 2.01
CPSF1-202ENST00000527827 AFG1LQ8WV93 481 aa27.59■■■□□ 2.01
CPSF1-202ENST00000527827 ANKS1AQ92625 1134 aa27.59■■■□□ 2.01
CPSF1-202ENST00000527827 CTAGE1Q96RT6 745 aa27.59■■■□□ 2.01
CPSF1-202ENST00000527827 UHRF1Q96T88 793 aaPredicted RBP27.59■■■□□ 2.01
CPSF1-202ENST00000527827 CERS4Q9HA82 394 aa27.59■■■□□ 2.01
CPSF1-202ENST00000527827 BDP1A6H8Y1 2624 aa27.59■■■□□ 2.01
CPSF1-202ENST00000527827 ABCB11O95342 1321 aa27.59■■■□□ 2.01
CPSF1-202ENST00000527827 EPOPA6NHQ4 379 aa27.58■■■□□ 2.01
CPSF1-202ENST00000527827 KDM4AO75164 1064 aa27.58■■■□□ 2.01
CPSF1-202ENST00000527827 ARHGEF15O94989 841 aa27.58■■■□□ 2.01
CPSF1-202ENST00000527827 MMP3P08254 477 aa27.58■■■□□ 2.01
CPSF1-202ENST00000527827 ARHGAP1Q07960 439 aa27.58■■■□□ 2.01
CPSF1-202ENST00000527827 LY6KQ17RY6 165 aa27.58■■■□□ 2.01
CPSF1-202ENST00000527827 SEPT14Q6ZU15 432 aa27.58■■■□□ 2.01
CPSF1-202ENST00000527827 FTOQ9C0B1 505 aaKnown RBP eCLIP27.58■■■□□ 2.01
CPSF1-202ENST00000527827 TSPYL2Q9H2G4 693 aaPredicted RBP27.58■■■□□ 2.01
CPSF1-202ENST00000527827 NOD1Q9Y239 953 aa27.58■■■□□ 2.01
CPSF1-202ENST00000527827 MTCH2Q9Y6C9 303 aa27.58■■■□□ 2.01
CPSF1-202ENST00000527827 GH1P01241 217 aa27.57■■■□□ 2
CPSF1-202ENST00000527827 CHMP4BP1P59074 171 aa27.57■■■□□ 2
CPSF1-202ENST00000527827 PTGISQ16647 500 aa27.57■■■□□ 2
CPSF1-202ENST00000527827 CCDC178Q5BJE1 867 aa27.57■■■□□ 2
CPSF1-202ENST00000527827 HERC6Q8IVU3 1022 aa27.57■■■□□ 2
CPSF1-202ENST00000527827 SMC5Q8IY18 1101 aa27.57■■■□□ 2
CPSF1-202ENST00000527827 NSUN6Q8TEA1 469 aaKnown RBP27.57■■■□□ 2
CPSF1-202ENST00000527827 KAT2BQ92831 832 aa27.57■■■□□ 2
CPSF1-202ENST00000527827 KAT14Q9H8E8 782 aa27.57■■■□□ 2
CPSF1-202ENST00000527827 NT5C2P49902 561 aa27.56■■■□□ 2
CPSF1-202ENST00000527827 TFF2Q03403 129 aa27.56■■■□□ 2
CPSF1-202ENST00000527827 TAP1Q03518 808 aa27.56■■■□□ 2
CPSF1-202ENST00000527827 GPNMBQ14956 572 aa27.56■■■□□ 2
CPSF1-202ENST00000527827 QRICH1Q2TAL8 776 aa27.56■■■□□ 2
CPSF1-202ENST00000527827 GDF6Q6KF10 455 aaPredicted RBP27.56■■■□□ 2
CPSF1-202ENST00000527827 SESTD1Q86VW0 696 aa27.56■■■□□ 2
CPSF1-202ENST00000527827 IQCA1Q86XH1 822 aa27.56■■■□□ 2
CPSF1-202ENST00000527827 PLEKHM2Q8IWE5 1019 aa27.56■■■□□ 2
CPSF1-202ENST00000527827 BMP1P13497 986 aa27.55■■■□□ 2
CPSF1-202ENST00000527827 COL9A1P20849 921 aa27.55■■■□□ 2
CPSF1-202ENST00000527827 ASPRV1Q53RT3 343 aa27.55■■■□□ 2
CPSF1-202ENST00000527827 IL27Q8NEV9 243 aa27.55■■■□□ 2
CPSF1-202ENST00000527827 IWS1Q96ST2 819 aa27.55■■■□□ 2
CPSF1-202ENST00000527827 ZSCAN10Q96SZ4 725 aaPredicted RBP27.55■■■□□ 2
CPSF1-202ENST00000527827 RMDN3Q96TC7 470 aa27.55■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms