RNA–Protein interactions for RNA: ENST00000525257.1

USP47-205, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 4

Gene USP47, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-205ENST00000525257 DNERQ8NFT8 737 aa28.12■■■□□ 2.09
USP47-205ENST00000525257 TXNP10599 105 aaKnown RBP28.11■■■□□ 2.09
USP47-205ENST00000525257 ADAMTS19Q8TE59 1207 aa28.11■■■□□ 2.09
USP47-205ENST00000525257 ZKSCAN3Q9BRR0 538 aa28.11■■■□□ 2.09
USP47-205ENST00000525257 CPVLQ9H3G5 476 aa28.11■■■□□ 2.09
USP47-205ENST00000525257 NEDD4P46934 1319 aa28.11■■■□□ 2.09
USP47-205ENST00000525257 A6NJR5 290 aa28.1■■■□□ 2.09
USP47-205ENST00000525257 PCP11498 1178 aaKnown RBP28.1■■■□□ 2.09
USP47-205ENST00000525257 ACTN1P12814 892 aa28.1■■■□□ 2.09
USP47-205ENST00000525257 CHMP4BP1P59074 171 aa28.1■■■□□ 2.09
USP47-205ENST00000525257 NFRKBQ6P4R8 1299 aa28.1■■■□□ 2.09
USP47-205ENST00000525257 RILPL2Q969X0 211 aa28.1■■■□□ 2.09
USP47-205ENST00000525257 BDP1A6H8Y1 2624 aa28.1■■■□□ 2.09
USP47-205ENST00000525257 KPNA6O60684 536 aa28.09■■■□□ 2.09
USP47-205ENST00000525257 ARIH2O95376 493 aa28.09■■■□□ 2.09
USP47-205ENST00000525257 CA3P07451 260 aa28.09■■■□□ 2.09
USP47-205ENST00000525257 HDAC1Q13547 482 aaPredicted RBP28.09■■■□□ 2.09
USP47-205ENST00000525257 TMEM67Q5HYA8 995 aa28.09■■■□□ 2.09
USP47-205ENST00000525257 GPATCH4Q5T3I0 446 aaKnown RBP28.09■■■□□ 2.09
USP47-205ENST00000525257 TICAM2Q86XR7 235 aa28.09■■■□□ 2.09
USP47-205ENST00000525257 IL27Q8NEV9 243 aa28.09■■■□□ 2.09
USP47-205ENST00000525257 LNPKQ9C0E8 428 aa28.09■■■□□ 2.09
USP47-205ENST00000525257 UBA5Q9GZZ9 404 aa28.09■■■□□ 2.09
USP47-205ENST00000525257 RNF41Q9H4P4 317 aaPredicted RBP28.09■■■□□ 2.09
USP47-205ENST00000525257 XIRP2A4UGR9 3374 aa28.08■■■□□ 2.09
USP47-205ENST00000525257 B4DLN1 442 aa28.08■■■□□ 2.09
USP47-205ENST00000525257 RFC2P35250 354 aa28.08■■■□□ 2.09
USP47-205ENST00000525257 MRPL12P52815 198 aaKnown RBP28.08■■■□□ 2.09
USP47-205ENST00000525257 RETREG2Q8NC44 543 aa28.08■■■□□ 2.09
USP47-205ENST00000525257 ESR2Q92731 530 aa28.08■■■□□ 2.09
USP47-205ENST00000525257 UHRF1Q96T88 793 aaPredicted RBP28.08■■■□□ 2.09
USP47-205ENST00000525257 TSPYL2Q9H2G4 693 aaPredicted RBP28.08■■■□□ 2.09
USP47-205ENST00000525257 NOD1Q9Y239 953 aa28.08■■■□□ 2.09
USP47-205ENST00000525257 NCOR1O75376 2440 aa28.07■■■□□ 2.08
USP47-205ENST00000525257 PITPNM1O00562 1244 aa28.07■■■□□ 2.08
USP47-205ENST00000525257 IQCF3P0C7M6 154 aa28.07■■■□□ 2.08
USP47-205ENST00000525257 PTPN11Q06124 597 aaPredicted RBP28.07■■■□□ 2.08
USP47-205ENST00000525257 FTOQ9C0B1 505 aaKnown RBP eCLIP28.07■■■□□ 2.08
USP47-205ENST00000525257 CERS4Q9HA82 394 aa28.07■■■□□ 2.08
USP47-205ENST00000525257 LAMA4Q16363 1823 aa28.06■■■□□ 2.08
USP47-205ENST00000525257 RFXAPO00287 272 aa28.06■■■□□ 2.08
USP47-205ENST00000525257 CDC37Q16543 378 aaPredicted RBP28.06■■■□□ 2.08
USP47-205ENST00000525257 SLC9A7Q96T83 725 aa28.06■■■□□ 2.08
USP47-205ENST00000525257 MFAP1P55081 439 aaKnown RBP28.05■■■□□ 2.08
USP47-205ENST00000525257 RGS22Q8NE09 1264 aa28.05■■■□□ 2.08
USP47-205ENST00000525257 TBC1D5Q92609 795 aa28.05■■■□□ 2.08
USP47-205ENST00000525257 ZNF213O14771 459 aa28.04■■■□□ 2.08
USP47-205ENST00000525257 BFSP2Q13515 415 aa28.04■■■□□ 2.08
USP47-205ENST00000525257 CCDC62Q6P9F0 684 aa28.04■■■□□ 2.08
USP47-205ENST00000525257 SEPT14Q6ZU15 432 aa28.04■■■□□ 2.08
USP47-205ENST00000525257 DGKHQ86XP1 1220 aa28.04■■■□□ 2.08
USP47-205ENST00000525257 PNMA1Q8ND90 353 aa28.04■■■□□ 2.08
USP47-205ENST00000525257 AFG1LQ8WV93 481 aa28.04■■■□□ 2.08
USP47-205ENST00000525257 TET1Q8NFU7 2136 aa28.04■■■□□ 2.08
USP47-205ENST00000525257 PRRC2BQ5JSZ5 2229 aaKnown RBP28.03■■■□□ 2.08
USP47-205ENST00000525257 ABCB11O95342 1321 aa28.03■■■□□ 2.08
USP47-205ENST00000525257 SDSP20132 328 aa28.03■■■□□ 2.08
USP47-205ENST00000525257 SKIV2LQ15477 1246 aaKnown RBP28.03■■■□□ 2.08
USP47-205ENST00000525257 PTGISQ16647 500 aa28.03■■■□□ 2.08
USP47-205ENST00000525257 LY6KQ17RY6 165 aa28.03■■■□□ 2.08
USP47-205ENST00000525257 TAAR1Q96RJ0 339 aa28.03■■■□□ 2.08
USP47-205ENST00000525257 COL20A1Q9P218 1284 aa28.03■■■□□ 2.08
USP47-205ENST00000525257 TRIP12Q14669 1992 aaPredicted RBP28.02■■■□□ 2.08
USP47-205ENST00000525257 EPOPA6NHQ4 379 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 KDM4AO75164 1064 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 MMP3P08254 477 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 COL9A1P20849 921 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 TFF2Q03403 129 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 CHST3Q7LGC8 479 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 IQCA1Q86XH1 822 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 HERC6Q8IVU3 1022 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 ADGRF4Q8IZF3 695 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 PHOSPHO2Q8TCD6 241 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 SYTL5Q8TDW5 730 aaPredicted RBP28.02■■■□□ 2.08
USP47-205ENST00000525257 KAT14Q9H8E8 782 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 MTCH2Q9Y6C9 303 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 TCF20Q9UGU0 1960 aaKnown RBP28.02■■■□□ 2.08
USP47-205ENST00000525257 KIAA1217Q5T5P2 1943 aa28.02■■■□□ 2.08
USP47-205ENST00000525257 MYH6P13533 1939 aa28.01■■■□□ 2.07
USP47-205ENST00000525257 GTPBP6O43824 516 aaPredicted RBP28.01■■■□□ 2.07
USP47-205ENST00000525257 ARHGEF15O94989 841 aa28.01■■■□□ 2.07
USP47-205ENST00000525257 GH1P01241 217 aa28.01■■■□□ 2.07
USP47-205ENST00000525257 ARHGAP1Q07960 439 aa28.01■■■□□ 2.07
USP47-205ENST00000525257 B4GALNT3Q6L9W6 998 aa28.01■■■□□ 2.07
USP47-205ENST00000525257 PTPRSQ13332 1948 aa28■■■□□ 2.07
USP47-205ENST00000525257 TAP1Q03518 808 aa28■■■□□ 2.07
USP47-205ENST00000525257 GDF6Q6KF10 455 aaPredicted RBP28■■■□□ 2.07
USP47-205ENST00000525257 CCDC155Q8N6L0 562 aa28■■■□□ 2.07
USP47-205ENST00000525257 NSUN6Q8TEA1 469 aaKnown RBP28■■■□□ 2.07
USP47-205ENST00000525257 ARNTL2Q8WYA1 636 aa28■■■□□ 2.07
USP47-205ENST00000525257 NECAB3Q96P71 396 aaPredicted RBP28■■■□□ 2.07
USP47-205ENST00000525257 RMDN3Q96TC7 470 aa28■■■□□ 2.07
USP47-205ENST00000525257 B4E1Z4 1266 aa27.99■■■□□ 2.07
USP47-205ENST00000525257 DHX16O60231 1041 aaKnown RBP27.99■■■□□ 2.07
USP47-205ENST00000525257 STXBP2Q15833 593 aa27.99■■■□□ 2.07
USP47-205ENST00000525257 QRICH1Q2TAL8 776 aa27.99■■■□□ 2.07
USP47-205ENST00000525257 CCDC178Q5BJE1 867 aa27.99■■■□□ 2.07
USP47-205ENST00000525257 KRT40Q6A162 431 aa27.99■■■□□ 2.07
USP47-205ENST00000525257 CWC27Q6UX04 472 aaKnown RBP27.99■■■□□ 2.07
USP47-205ENST00000525257 CAGE1Q8TC20 777 aa27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms