RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 TNKSO95271 1327 aa14.84□□□□□ -0.03
SKA1-205ENST00000494518 PTPRSQ13332 1948 aa14.84□□□□□ -0.03
SKA1-205ENST00000494518 RBM47A0AV96 593 aaKnown RBP14.83□□□□□ -0.04
SKA1-205ENST00000494518 RBAK-RBAKDNI3L0D1 243 aa14.83□□□□□ -0.04
SKA1-205ENST00000494518 HAX1O00165 279 aa14.83□□□□□ -0.04
SKA1-205ENST00000494518 ARIH2O95376 493 aa14.83□□□□□ -0.04
SKA1-205ENST00000494518 SNHG28P0DPA3 235 aa14.83□□□□□ -0.04
SKA1-205ENST00000494518 SDSP20132 328 aa14.83□□□□□ -0.04
SKA1-205ENST00000494518 TTLL4Q14679 1199 aa14.83□□□□□ -0.04
SKA1-205ENST00000494518 NBPF20Q3BBV1 942 aa14.83□□□□□ -0.04
SKA1-205ENST00000494518 TBC1D5Q92609 795 aa14.83□□□□□ -0.04
SKA1-205ENST00000494518 VWCEQ96DN2 955 aa14.83□□□□□ -0.04
SKA1-205ENST00000494518 YTHDC1Q96MU7 727 aaKnown RBP14.83□□□□□ -0.04
SKA1-205ENST00000494518 MTG1Q9BT17 334 aaPredicted RBP14.83□□□□□ -0.04
SKA1-205ENST00000494518 GPHNQ9NQX3 736 aaPredicted RBP14.83□□□□□ -0.04
SKA1-205ENST00000494518 SSUH2Q9Y2M2 353 aa14.83□□□□□ -0.04
SKA1-205ENST00000494518 TRANK1O15050 2925 aa14.82□□□□□ -0.04
SKA1-205ENST00000494518 KDM4AO75164 1064 aa14.82□□□□□ -0.04
SKA1-205ENST00000494518 CDC37Q16543 378 aaPredicted RBP14.82□□□□□ -0.04
SKA1-205ENST00000494518 CWC27Q6UX04 472 aaKnown RBP14.82□□□□□ -0.04
SKA1-205ENST00000494518 MICALL1Q8N3F8 863 aa14.82□□□□□ -0.04
SKA1-205ENST00000494518 ESR2Q92731 530 aa14.82□□□□□ -0.04
SKA1-205ENST00000494518 TTC14Q96N46 770 aa14.82□□□□□ -0.04
SKA1-205ENST00000494518 RNF41Q9H4P4 317 aaPredicted RBP14.82□□□□□ -0.04
SKA1-205ENST00000494518 SLC28A3Q9HAS3 691 aa14.82□□□□□ -0.04
SKA1-205ENST00000494518 SLC4A7Q9Y6M7 1214 aa14.82□□□□□ -0.04
SKA1-205ENST00000494518 BDP1A6H8Y1 2624 aa14.82□□□□□ -0.04
SKA1-205ENST00000494518 WDR19Q8NEZ3 1342 aa14.82□□□□□ -0.04
SKA1-205ENST00000494518 B4E1Z4 1266 aa14.81□□□□□ -0.04
SKA1-205ENST00000494518 ZNF213O14771 459 aa14.81□□□□□ -0.04
SKA1-205ENST00000494518 TXNP10599 105 aaKnown RBP14.81□□□□□ -0.04
SKA1-205ENST00000494518 EDNRBP24530 442 aa14.81□□□□□ -0.04
SKA1-205ENST00000494518 TJAP1Q5JTD0 557 aa14.81□□□□□ -0.04
SKA1-205ENST00000494518 PPP2R2DQ66LE6 453 aa14.81□□□□□ -0.04
SKA1-205ENST00000494518 PLEKHM2Q8IWE5 1019 aa14.81□□□□□ -0.04
SKA1-205ENST00000494518 RPUSD2Q8IZ73 545 aaKnown RBP14.81□□□□□ -0.04
SKA1-205ENST00000494518 PNMA1Q8ND90 353 aa14.81□□□□□ -0.04
SKA1-205ENST00000494518 SCFD2Q8WU76 684 aa14.81□□□□□ -0.04
SKA1-205ENST00000494518 SEZ6LQ9BYH1 1024 aa14.81□□□□□ -0.04
SKA1-205ENST00000494518 LOC102724159A0A0B4J2E5 919 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 DHX16O60231 1041 aaKnown RBP14.8□□□□□ -0.04
SKA1-205ENST00000494518 IGHDP01880 384 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 MFAP1P55081 439 aaKnown RBP14.8□□□□□ -0.04
SKA1-205ENST00000494518 PWP2Q15269 919 aaKnown RBP14.8□□□□□ -0.04
SKA1-205ENST00000494518 SEPT14Q6ZU15 432 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 CHST3Q7LGC8 479 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 CHD1LQ86WJ1 897 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 SMC5Q8IY18 1101 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 SYMPKQ92797 1274 aaKnown RBP14.8□□□□□ -0.04
SKA1-205ENST00000494518 TAAR1Q96RJ0 339 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 MPHOSPH6Q99547 160 aaKnown RBP14.8□□□□□ -0.04
SKA1-205ENST00000494518 KAT14Q9H8E8 782 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 CERS4Q9HA82 394 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 VAT1LQ9HCJ6 419 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 DIAPH3Q9NSV4 1193 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 COL20A1Q9P218 1284 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 RAD50Q92878 1312 aa14.8□□□□□ -0.04
SKA1-205ENST00000494518 RFXAPO00287 272 aa14.79□□□□□ -0.04
SKA1-205ENST00000494518 NKRFO15226 690 aaKnown RBP eCLIP14.79□□□□□ -0.04
SKA1-205ENST00000494518 SUPT20HL2P0C7V6 817 aa14.79□□□□□ -0.04
SKA1-205ENST00000494518 PCP11498 1178 aaKnown RBP14.79□□□□□ -0.04
SKA1-205ENST00000494518 ATP2A2P16615 1042 aaKnown RBP14.79□□□□□ -0.04
SKA1-205ENST00000494518 BRDTQ58F21 947 aaPredicted RBP14.79□□□□□ -0.04
SKA1-205ENST00000494518 GPATCH4Q5T3I0 446 aaKnown RBP14.79□□□□□ -0.04
SKA1-205ENST00000494518 ADGRF4Q8IZF3 695 aa14.79□□□□□ -0.04
SKA1-205ENST00000494518 DNERQ8NFT8 737 aa14.79□□□□□ -0.04
SKA1-205ENST00000494518 AFG1LQ8WV93 481 aa14.79□□□□□ -0.04
SKA1-205ENST00000494518 RWDD1Q9H446 243 aaPredicted RBP14.79□□□□□ -0.04
SKA1-205ENST00000494518 BRWD1Q9NSI6 2320 aa14.79□□□□□ -0.04
SKA1-205ENST00000494518 THEGQ9P2T0 379 aa14.79□□□□□ -0.04
SKA1-205ENST00000494518 PNMA2Q9UL42 364 aa14.79□□□□□ -0.04
SKA1-205ENST00000494518 NOD1Q9Y239 953 aa14.79□□□□□ -0.04
SKA1-205ENST00000494518 ABCB11O95342 1321 aa14.78□□□□□ -0.04
SKA1-205ENST00000494518 A6NJR5 290 aa14.78□□□□□ -0.04
SKA1-205ENST00000494518 LY6KQ17RY6 165 aa14.78□□□□□ -0.04
SKA1-205ENST00000494518 QRICH1Q2TAL8 776 aa14.78□□□□□ -0.04
SKA1-205ENST00000494518 IQCA1Q86XH1 822 aa14.78□□□□□ -0.04
SKA1-205ENST00000494518 DGKHQ86XP1 1220 aa14.78□□□□□ -0.04
SKA1-205ENST00000494518 ENAHQ8N8S7 591 aaPredicted RBP14.78□□□□□ -0.04
SKA1-205ENST00000494518 SYTL5Q8TDW5 730 aaPredicted RBP14.78□□□□□ -0.04
SKA1-205ENST00000494518 ZSCAN10Q96SZ4 725 aaPredicted RBP14.78□□□□□ -0.04
SKA1-205ENST00000494518 FTOQ9C0B1 505 aaKnown RBP eCLIP14.78□□□□□ -0.04
SKA1-205ENST00000494518 XIRP2A4UGR9 3374 aa14.78□□□□□ -0.04
SKA1-205ENST00000494518 DOCK5Q9H7D0 1870 aa14.78□□□□□ -0.04
SKA1-205ENST00000494518 COL4A4P53420 1690 aaPredicted RBP14.77□□□□□ -0.04
SKA1-205ENST00000494518 B4DLN1 442 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 PITPNM1O00562 1244 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 SORBS3O60504 671 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 CA3P07451 260 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 EIF2AK2P19525 551 aaKnown RBP14.77□□□□□ -0.05
SKA1-205ENST00000494518 MRPL12P52815 198 aaKnown RBP14.77□□□□□ -0.05
SKA1-205ENST00000494518 NUCB1Q02818 461 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 NFRKBQ6P4R8 1299 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 TICAM2Q86XR7 235 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 RETREG2Q8NC44 543 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 EXOC6Q8TAG9 804 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 IL25Q9H293 177 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 PCDHA11Q9Y5I1 949 aa14.77□□□□□ -0.05
SKA1-205ENST00000494518 ARHGEF15O94989 841 aa14.76□□□□□ -0.05
SKA1-205ENST00000494518 MMP3P08254 477 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms