RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS41-214ENST00000490924 TIAM2Q8IVF5 1701 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 RTL9Q8NET4 1388 aa6.66□□□□□ -1.34
VPS41-214ENST00000490924 LAMA4Q16363 1823 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 KLF18A0A0U1RQI7 1052 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 GPAA1O43292 621 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 COBLO75128 1261 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 ZNF18P17022 549 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 ATF3P18847 181 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 HOXA7P31268 230 aaPredicted RBP6.65□□□□□ -1.34
VPS41-214ENST00000490924 ADD2P35612 726 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 ANTXR2P58335 489 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 FANCCQ00597 558 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 SLC20A2Q08357 652 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 TBX2Q13207 712 aaPredicted RBP6.65□□□□□ -1.34
VPS41-214ENST00000490924 IFIT5Q13325 482 aaKnown RBP6.65□□□□□ -1.34
VPS41-214ENST00000490924 TRIM29Q14134 588 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 NTRK3Q16288 839 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 FAM117BQ6P1L5 589 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 ARMCX5Q6P1M9 558 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 APOA5Q6Q788 366 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 CCDC129Q6ZRS4 1044 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 VPS37DQ86XT2 251 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 KRTAP1-3Q8IUG1 177 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 CMTR1Q8N1G2 835 aaKnown RBP6.65□□□□□ -1.34
VPS41-214ENST00000490924 TMEM130Q8N3G9 435 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 IL22RA1Q8N6P7 574 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 ZCRB1Q8TBF4 217 aaKnown RBP6.65□□□□□ -1.34
VPS41-214ENST00000490924 DDX54Q8TDD1 881 aaKnown RBP6.65□□□□□ -1.34
VPS41-214ENST00000490924 PLD4Q96BZ4 506 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 MEGF10Q96KG7 1140 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 NEUROD6Q96NK8 337 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 PANX2Q96RD6 677 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 CTAGE1Q96RT6 745 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 MAP3K14Q99558 947 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 CARD10Q9BWT7 1032 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 CEP41Q9BYV8 373 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 UBXN6Q9BZV1 441 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 KRT23Q9C075 422 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 XPO4Q9C0E2 1151 aaKnown RBP6.65□□□□□ -1.34
VPS41-214ENST00000490924 TSPYL1Q9H0U9 437 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 VRTNQ9H8Y1 702 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 MYO1AQ9UBC5 1043 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 RIPOR2Q9Y4F9 1068 aa6.65□□□□□ -1.34
VPS41-214ENST00000490924 PNPLA7Q6ZV29 1317 aa6.65□□□□□ -1.35
VPS41-214ENST00000490924 RIC1Q4ADV7 1423 aa6.65□□□□□ -1.35
VPS41-214ENST00000490924 LOC102724428A0A0B4J2F2 783 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 A0A1B0GVL5 298 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 ERVV-1B6SEH8 477 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 M0R2C6 588 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 DHX15O43143 795 aaKnown RBP6.64□□□□□ -1.35
VPS41-214ENST00000490924 XYLBO75191 536 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 TADA3O75528 432 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 ZRANB2O95218 330 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS41-214ENST00000490924 SMC2O95347 1197 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 SLFN14P0C7P3 912 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 YBX3P16989 372 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS41-214ENST00000490924 PIP4K2AP48426 406 aaPredicted RBP6.64□□□□□ -1.35
VPS41-214ENST00000490924 SARSP49591 514 aaKnown RBP6.64□□□□□ -1.35
VPS41-214ENST00000490924 METAP2P50579 478 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS41-214ENST00000490924 SIK1P57059 783 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 UBASH3AP57075 661 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 CBX1P83916 185 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 DPYDQ12882 1025 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 SART3Q15020 963 aaKnown RBP6.64□□□□□ -1.35
VPS41-214ENST00000490924 SAFBQ15424 915 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS41-214ENST00000490924 GORABQ5T7V8 394 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 SPECC1LQ69YQ0 1117 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 FBXO38Q6PIJ6 1188 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 KRBA2Q6ZNG9 492 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 PROSER2Q86WR7 435 aaPredicted RBP6.64□□□□□ -1.35
VPS41-214ENST00000490924 NOSTRINQ8IVI9 506 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 VGLL2Q8N8G2 317 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 HNRNPLLQ8WVV9 542 aaKnown RBP6.64□□□□□ -1.35
VPS41-214ENST00000490924 RABGGTAQ92696 567 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 IFT43Q96FT9 208 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 UCN2Q96RP3 112 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 ALG1Q9BT22 464 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 HSD3B7Q9H2F3 369 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 RNF41Q9H4P4 317 aaPredicted RBP6.64□□□□□ -1.35
VPS41-214ENST00000490924 PSD3Q9NYI0 1048 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 IFNKQ9P0W0 207 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 CALCOCO1Q9P1Z2 691 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 STOML1Q9UBI4 398 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 RAXQ9Y2V3 346 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 CLIC4Q9Y696 253 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 ITIH6Q6UXX5 1313 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 MROH5Q6ZUA9 1318 aa6.64□□□□□ -1.35
VPS41-214ENST00000490924 CCDC151A5D8V7 595 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 USP27XA6NNY8 438 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 DLL1O00548 723 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 ZBTB43O43298 467 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 DEXIO95424 95 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 STARD3NLO95772 234 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 COL5A2P05997 1499 aaPredicted RBP6.63□□□□□ -1.35
VPS41-214ENST00000490924 C4AP0C0L4 1744 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 C4BP0C0L5 1744 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 TOP1P11387 765 aaKnown RBP6.63□□□□□ -1.35
VPS41-214ENST00000490924 XBP1P17861 261 aa6.63□□□□□ -1.35
VPS41-214ENST00000490924 IARSP41252 1262 aaKnown RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms