RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 AEBP2Q6ZN18 517 aaPredicted RBP22.45■■□□□ 1.18
VPS41-214ENST00000490924 CHIC1Q5VXU3 224 aa21.42■■□□□ 1.02
VPS41-214ENST00000490924 SENP3Q9H4L4 574 aaPredicted RBP19.45■□□□□ 0.7
VPS41-214ENST00000490924 PHF23Q9BUL5 403 aaPredicted RBP19.1■□□□□ 0.65
VPS41-214ENST00000490924 FOXD1Q16676 465 aa17.96■□□□□ 0.47
VPS41-214ENST00000490924 PLPPR3Q6T4P5 718 aa17.23■□□□□ 0.35
VPS41-214ENST00000490924 MSH5O43196 834 aa17.05■□□□□ 0.32
VPS41-214ENST00000490924 PIAS4Q8N2W9 510 aaPredicted RBP16.92■□□□□ 0.3
VPS41-214ENST00000490924 ADRA2BP18089 450 aa16.7■□□□□ 0.26
VPS41-214ENST00000490924 PPP6R1Q9UPN7 881 aa16.65■□□□□ 0.26
VPS41-214ENST00000490924 POTEDQ86YR6 584 aa16.56■□□□□ 0.24
VPS41-214ENST00000490924 SCAF1Q9H7N4 1312 aaKnown RBP15.6■□□□□ 0.09
VPS41-214ENST00000490924 DMRT2Q9Y5R5 561 aa15.32■□□□□ 0.04
VPS41-214ENST00000490924 MAPK8IP2Q13387 824 aaPredicted RBP15.3■□□□□ 0.04
VPS41-214ENST00000490924 PPP4R3CPQ6ZMV5 832 aa15.02■□□□□ -0
VPS41-214ENST00000490924 DCAF8L1A6NGE4 600 aa14.91□□□□□ -0.02
VPS41-214ENST00000490924 CNKSR2Q8WXI2 1034 aa14.81□□□□□ -0.04
VPS41-214ENST00000490924 HOXD11P31277 338 aaPredicted RBP14.7□□□□□ -0.06
VPS41-214ENST00000490924 CACNB1Q02641 598 aaPredicted RBP14.69□□□□□ -0.06
VPS41-214ENST00000490924 RNF216Q9NWF9 866 aaPredicted RBP14.65□□□□□ -0.06
VPS41-214ENST00000490924 NCBP3Q53F19 620 aaKnown RBP14.63□□□□□ -0.07
VPS41-214ENST00000490924 RNF39Q9H2S5 420 aa14.39□□□□□ -0.11
VPS41-214ENST00000490924 C1QBPQ07021 282 aaKnown RBP14.31□□□□□ -0.12
VPS41-214ENST00000490924 DNAJC5BQ9UF47 199 aa14.28□□□□□ -0.12
VPS41-214ENST00000490924 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.22□□□□□ -0.13
VPS41-214ENST00000490924 NPM3O75607 178 aaKnown RBP14.15□□□□□ -0.14
VPS41-214ENST00000490924 KCNA4P22459 653 aa13.8□□□□□ -0.2
VPS41-214ENST00000490924 CAPN15O75808 1086 aa13.7□□□□□ -0.22
VPS41-214ENST00000490924 APLP2Q06481 763 aa13.7□□□□□ -0.22
VPS41-214ENST00000490924 U3KPZ7 1027 aaPredicted RBP13.69□□□□□ -0.22
VPS41-214ENST00000490924 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.59□□□□□ -0.23
VPS41-214ENST00000490924 HNRNPUL2Q1KMD3 747 aaKnown RBP13.59□□□□□ -0.23
VPS41-214ENST00000490924 SPINK5Q9NQ38 1064 aaPredicted RBP13.5□□□□□ -0.25
VPS41-214ENST00000490924 ZNF219Q9P2Y4 722 aaPredicted RBP13.46□□□□□ -0.25
VPS41-214ENST00000490924 DSG3P32926 999 aa13.45□□□□□ -0.26
VPS41-214ENST00000490924 SLC4A2P04920 1241 aa13.44□□□□□ -0.26
VPS41-214ENST00000490924 TRHP20396 242 aaPredicted RBP13.44□□□□□ -0.26
VPS41-214ENST00000490924 SAMD1Q6SPF0 538 aaPredicted RBP13.44□□□□□ -0.26
VPS41-214ENST00000490924 ABCB7O75027 752 aa13.27□□□□□ -0.29
VPS41-214ENST00000490924 MYCNP04198 464 aaPredicted RBP13.22□□□□□ -0.29
VPS41-214ENST00000490924 SLC4A1APQ9BWU0 796 aaKnown RBP13.16□□□□□ -0.3
VPS41-214ENST00000490924 RBM42Q9BTD8 480 aaKnown RBP13.08□□□□□ -0.32
VPS41-214ENST00000490924 POTEHQ6S545 545 aa13.05□□□□□ -0.32
VPS41-214ENST00000490924 FOXD4L1Q9NU39 408 aa13.03□□□□□ -0.32
VPS41-214ENST00000490924 POLA2Q14181 598 aa13□□□□□ -0.33
VPS41-214ENST00000490924 ZBTB12Q9Y330 459 aaPredicted RBP12.91□□□□□ -0.34
VPS41-214ENST00000490924 CHRDL2Q6WN34 429 aa12.67□□□□□ -0.38
VPS41-214ENST00000490924 ATF5Q9Y2D1 282 aaPredicted RBP12.67□□□□□ -0.38
VPS41-214ENST00000490924 ATXN8OSP0DMR3 200 aa12.66□□□□□ -0.38
VPS41-214ENST00000490924 AKT1S1Q96B36 256 aa12.66□□□□□ -0.38
VPS41-214ENST00000490924 FBLN2P98095 1184 aa12.57□□□□□ -0.4
VPS41-214ENST00000490924 ZBTB22O15209 634 aa12.54□□□□□ -0.4
VPS41-214ENST00000490924 OSCARQ8IYS5 282 aa12.54□□□□□ -0.4
VPS41-214ENST00000490924 REM2Q8IYK8 340 aaPredicted RBP12.47□□□□□ -0.41
VPS41-214ENST00000490924 SPDYE2BA6NHP3 402 aa12.4□□□□□ -0.42
VPS41-214ENST00000490924 SPDYE6P0CI01 402 aa12.4□□□□□ -0.42
VPS41-214ENST00000490924 SPDYE2Q495Y8 402 aa12.4□□□□□ -0.42
VPS41-214ENST00000490924 PITPNM1O00562 1244 aa12.31□□□□□ -0.44
VPS41-214ENST00000490924 PIP4P2Q8N4L2 257 aa12.29□□□□□ -0.44
VPS41-214ENST00000490924 ZNF692Q9BU19 519 aaPredicted RBP12.26□□□□□ -0.45
VPS41-214ENST00000490924 HAX1O00165 279 aa12.25□□□□□ -0.45
VPS41-214ENST00000490924 SPDYE1Q8NFV5 336 aaPredicted RBP12.25□□□□□ -0.45
VPS41-214ENST00000490924 CLEC11AQ9Y240 323 aa12.23□□□□□ -0.45
VPS41-214ENST00000490924 SP7Q8TDD2 431 aaPredicted RBP12.22□□□□□ -0.45
VPS41-214ENST00000490924 FXR2P51116 673 aaKnown RBP eCLIP12.2□□□□□ -0.46
VPS41-214ENST00000490924 MKRN4PQ13434 485 aaPredicted RBP12.1□□□□□ -0.47
VPS41-214ENST00000490924 SSUH2Q9Y2M2 353 aa12.08□□□□□ -0.48
VPS41-214ENST00000490924 PRKAR2AP13861 404 aaKnown RBP12.07□□□□□ -0.48
VPS41-214ENST00000490924 PRR29P0C7W0 189 aa12.02□□□□□ -0.49
VPS41-214ENST00000490924 PABPN1Q86U42 306 aaKnown RBP eCLIP12.02□□□□□ -0.49
VPS41-214ENST00000490924 CSRNP3Q8WYN3 585 aa12.01□□□□□ -0.49
VPS41-214ENST00000490924 EHMT2Q96KQ7 1210 aa11.97□□□□□ -0.49
VPS41-214ENST00000490924 NISCHQ9Y2I1 1504 aa11.91□□□□□ -0.5
VPS41-214ENST00000490924 CHADLQ6NUI6 762 aa11.85□□□□□ -0.51
VPS41-214ENST00000490924 STAG3Q9UJ98 1225 aa11.84□□□□□ -0.51
VPS41-214ENST00000490924 C19orf67A6NJJ6 358 aa11.82□□□□□ -0.52
VPS41-214ENST00000490924 EVX2Q03828 476 aa11.78□□□□□ -0.52
VPS41-214ENST00000490924 SPDYE4A6NLX3 237 aa11.72□□□□□ -0.53
VPS41-214ENST00000490924 FARP1Q9Y4F1 1045 aaPredicted RBP11.71□□□□□ -0.53
VPS41-214ENST00000490924 CD44P16070 742 aaKnown RBP11.7□□□□□ -0.54
VPS41-214ENST00000490924 GABBR2O75899 941 aa11.69□□□□□ -0.54
VPS41-214ENST00000490924 CLCN6P51797 869 aa11.69□□□□□ -0.54
VPS41-214ENST00000490924 PAK3O75914 559 aaPredicted RBP11.63□□□□□ -0.55
VPS41-214ENST00000490924 NPM1P06748 294 aaKnown RBP eCLIP11.57□□□□□ -0.56
VPS41-214ENST00000490924 DCBLD2Q96PD2 775 aa11.55□□□□□ -0.56
VPS41-214ENST00000490924 ZRANB1Q9UGI0 708 aa11.55□□□□□ -0.56
VPS41-214ENST00000490924 CREBZFQ9NS37 354 aa11.51□□□□□ -0.57
VPS41-214ENST00000490924 PLEKHG5O94827 1062 aa11.48□□□□□ -0.57
VPS41-214ENST00000490924 LHX8Q68G74 356 aa11.48□□□□□ -0.57
VPS41-214ENST00000490924 ZNF579Q8NAF0 562 aaKnown RBP11.46□□□□□ -0.57
VPS41-214ENST00000490924 POTEIP0CG38 1075 aa11.28□□□□□ -0.6
VPS41-214ENST00000490924 MIER1Q8N108 512 aa11.28□□□□□ -0.6
VPS41-214ENST00000490924 GALR2O43603 387 aaPredicted RBP11.27□□□□□ -0.61
VPS41-214ENST00000490924 PHF12Q96QT6 1004 aa11.27□□□□□ -0.61
VPS41-214ENST00000490924 TSPYL2Q9H2G4 693 aaPredicted RBP11.24□□□□□ -0.61
VPS41-214ENST00000490924 PROM2Q8N271 834 aa11.23□□□□□ -0.61
VPS41-214ENST00000490924 PLCD3Q8N3E9 789 aa11.23□□□□□ -0.61
VPS41-214ENST00000490924 ZBTB47Q9UFB7 747 aaPredicted RBP11.22□□□□□ -0.61
VPS41-214ENST00000490924 MNX1P50219 401 aaPredicted RBP11.21□□□□□ -0.61
VPS41-214ENST00000490924 MS4A3Q96HJ5 214 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms