RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.7□□□□□ -0.38
UBE4B-210ENST00000488228 RIC8AQ9NPQ8 531 aa12.7□□□□□ -0.38
UBE4B-210ENST00000488228 PXMP2Q9NR77 195 aa12.7□□□□□ -0.38
UBE4B-210ENST00000488228 GJB4Q9NTQ9 266 aa12.7□□□□□ -0.38
UBE4B-210ENST00000488228 ZHX1Q9UKY1 873 aaPredicted RBP12.7□□□□□ -0.38
UBE4B-210ENST00000488228 FRMPD4Q14CM0 1322 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 ESYT2A0FGR8 921 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 SMCO2A6NFE2 343 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 ASB14A6NK59 587 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 PIK3CDO00329 1044 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 MCM2P49736 904 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 MSL3Q8N5Y2 521 aaKnown RBP12.69□□□□□ -0.38
UBE4B-210ENST00000488228 DNERQ8NFT8 737 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 RASGRP4Q8TDF6 673 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 CCDC12Q8WUD4 166 aaPredicted RBP12.69□□□□□ -0.38
UBE4B-210ENST00000488228 KATNBL1Q9H079 304 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 TMEM260Q9NX78 707 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 CNPY2Q9Y2B0 182 aa12.69□□□□□ -0.38
UBE4B-210ENST00000488228 RPTORQ8N122 1335 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 ZNF865P0CJ78 1059 aaPredicted RBP12.68□□□□□ -0.38
UBE4B-210ENST00000488228 EDNRBP24530 442 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 CNGA1P29973 690 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 SOX10P56693 466 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 PDE4DQ08499 809 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 ARHGEF16Q5VV41 709 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 ANO1Q5XXA6 986 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 REXO1Q8N1G1 1221 aaKnown RBP12.68□□□□□ -0.38
UBE4B-210ENST00000488228 MORC4Q8TE76 937 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 NSUN6Q8TEA1 469 aaKnown RBP12.68□□□□□ -0.38
UBE4B-210ENST00000488228 ZFP91Q96JP5 570 aaPredicted RBP12.68□□□□□ -0.38
UBE4B-210ENST00000488228 PDCD2LQ9BRP1 358 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 ALG1Q9BT22 464 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 MAF1Q9H063 256 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 ZMYND12Q9H0C1 365 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 RNF208Q9H0X6 261 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 HMX1Q9NP08 348 aaPredicted RBP12.68□□□□□ -0.38
UBE4B-210ENST00000488228 PAK6Q9NQU5 681 aaPredicted RBP12.68□□□□□ -0.38
UBE4B-210ENST00000488228 KCNJ14Q9UNX9 436 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 ALPK3Q96L96 1907 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 MYH15Q9Y2K3 1946 aa12.68□□□□□ -0.38
UBE4B-210ENST00000488228 CCDC85CA6NKD9 419 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 SPDYE3A6NKU9 549 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 ADCY6O43306 1168 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 MYCLP12524 364 aaPredicted RBP12.67□□□□□ -0.38
UBE4B-210ENST00000488228 PTGS1P23219 599 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 MRPL12P52815 198 aaKnown RBP12.67□□□□□ -0.38
UBE4B-210ENST00000488228 NLRP5P59047 1200 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 PGM5Q15124 567 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 NPY5RQ15761 445 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 JAKMIP3Q5VZ66 844 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 SAMD3Q8N6K7 520 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 IL27Q8NEV9 243 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 DEFB118Q96PH6 123 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 LLPHQ9BRT6 129 aaKnown RBP12.67□□□□□ -0.38
UBE4B-210ENST00000488228 ANO3Q9BYT9 981 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 C6orf50Q9HD87 102 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 SH3GLB2Q9NR46 395 aa12.67□□□□□ -0.38
UBE4B-210ENST00000488228 MAP3K20Q9NYL2 800 aaKnown RBP12.67□□□□□ -0.38
UBE4B-210ENST00000488228 LOC102724159A0A0B4J2E5 919 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 POTEFA5A3E0 1075 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 NR3C2P08235 984 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 CCND2P30279 289 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 ADCYAP1R1P41586 468 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 CLK2P49760 499 aaKnown RBP12.66□□□□□ -0.38
UBE4B-210ENST00000488228 ACVR2BQ13705 512 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 PWP2Q15269 919 aaKnown RBP12.66□□□□□ -0.38
UBE4B-210ENST00000488228 WASF1Q92558 559 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 MPHOSPH6Q99547 160 aaKnown RBP12.66□□□□□ -0.38
UBE4B-210ENST00000488228 ABHD16BQ9H3Z7 469 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 VTA1Q9NP79 307 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 PDGFCQ9NRA1 345 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 DDX20Q9UHI6 824 aaKnown RBP12.66□□□□□ -0.38
UBE4B-210ENST00000488228 PCDHA6Q9UN73 950 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 PCDHA4Q9UN74 947 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 PCDHA8Q9Y5H6 950 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 WDR81Q562E7 1941 aa12.66□□□□□ -0.38
UBE4B-210ENST00000488228 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.65□□□□□ -0.38
UBE4B-210ENST00000488228 K7ELQ4 463 aaPredicted RBP12.65□□□□□ -0.38
UBE4B-210ENST00000488228 SEPT4O43236 478 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 GNA11P29992 359 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 HMGN5P82970 282 aaKnown RBP12.65□□□□□ -0.38
UBE4B-210ENST00000488228 GUCY1B3Q02153 619 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 AP3B2Q13367 1082 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 CCDC144BQ3MJ40 725 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 TMEM63BQ5T3F8 832 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 GJC2Q5T442 439 aaPredicted RBP12.65□□□□□ -0.38
UBE4B-210ENST00000488228 HSCBQ8IWL3 235 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 DAGLBQ8NCG7 672 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 OXER1Q8TDS5 423 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 U2AF1L4Q8WU68 220 aaKnown RBP12.65□□□□□ -0.38
UBE4B-210ENST00000488228 IWS1Q96ST2 819 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 PHF20Q9BVI0 1012 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 TMEM106CQ9BVX2 250 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 GLT8D2Q9H1C3 349 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 NRBP1Q9UHY1 535 aa12.65□□□□□ -0.38
UBE4B-210ENST00000488228 B4DLN1 442 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 CAPN15O75808 1086 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 GJB1P08034 283 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 AKR1A1P14550 325 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 MRPS9P82933 396 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms