RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 COPS5Q92905 334 aa16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 ZKSCAN3Q9BRR0 538 aa16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 LNPKQ9C0E8 428 aa16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 GPHNQ9NQX3 736 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 ADD3Q9UEY8 706 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 MTCH2Q9Y6C9 303 aa16.3■□□□□ 0.2
SQSTM1-208ENST00000485412 CCDC171Q6TFL3 1326 aa16.29■□□□□ 0.2
SQSTM1-208ENST00000485412 GOLGA8HP0CJ92 632 aa16.29■□□□□ 0.2
SQSTM1-208ENST00000485412 CPT1AP50416 773 aa16.29■□□□□ 0.2
SQSTM1-208ENST00000485412 PURAQ00577 322 aaKnown RBP16.29■□□□□ 0.2
SQSTM1-208ENST00000485412 ZNF543Q08ER8 600 aa16.29■□□□□ 0.2
SQSTM1-208ENST00000485412 HDAC1Q13547 482 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-208ENST00000485412 OR6J1Q8NGC5 347 aa16.29■□□□□ 0.2
SQSTM1-208ENST00000485412 SLC9A7Q96T83 725 aa16.29■□□□□ 0.2
SQSTM1-208ENST00000485412 WDR11Q9BZH6 1224 aa16.29■□□□□ 0.2
SQSTM1-208ENST00000485412 TCP11L1Q9NUJ3 509 aa16.29■□□□□ 0.2
SQSTM1-208ENST00000485412 ZMYM6O95789 1325 aa16.28■□□□□ 0.2
SQSTM1-208ENST00000485412 SNHG28P0DPA3 235 aa16.28■□□□□ 0.2
SQSTM1-208ENST00000485412 RFC2P35250 354 aa16.28■□□□□ 0.2
SQSTM1-208ENST00000485412 RPS6P62753 249 aaKnown RBP16.28■□□□□ 0.2
SQSTM1-208ENST00000485412 BRDTQ58F21 947 aaPredicted RBP16.28■□□□□ 0.2
SQSTM1-208ENST00000485412 RETREG2Q8NC44 543 aa16.28■□□□□ 0.2
SQSTM1-208ENST00000485412 ARNTL2Q8WYA1 636 aa16.28■□□□□ 0.2
SQSTM1-208ENST00000485412 MTG1Q9BT17 334 aaPredicted RBP16.28■□□□□ 0.2
SQSTM1-208ENST00000485412 FTOQ9C0B1 505 aaKnown RBP eCLIP16.28■□□□□ 0.2
SQSTM1-208ENST00000485412 COG5Q9UP83 839 aa16.28■□□□□ 0.2
SQSTM1-208ENST00000485412 RAD50Q92878 1312 aa16.27■□□□□ 0.2
SQSTM1-208ENST00000485412 RBM47A0AV96 593 aaKnown RBP16.27■□□□□ 0.2
SQSTM1-208ENST00000485412 KIF28PB7ZC32 967 aa16.27■□□□□ 0.2
SQSTM1-208ENST00000485412 ARIH2O95376 493 aa16.27■□□□□ 0.2
SQSTM1-208ENST00000485412 POU3F3P20264 500 aaPredicted RBP16.27■□□□□ 0.2
SQSTM1-208ENST00000485412 RNF207Q6ZRF8 634 aa16.27■□□□□ 0.2
SQSTM1-208ENST00000485412 TBC1D5Q92609 795 aa16.27■□□□□ 0.2
SQSTM1-208ENST00000485412 HCN4Q9Y3Q4 1203 aa16.27■□□□□ 0.2
SQSTM1-208ENST00000485412 MYH7BA7E2Y1 1941 aa16.27■□□□□ 0.19
SQSTM1-208ENST00000485412 EPOPA6NHQ4 379 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 TRIM6-TRIM34B2RNG4 842 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 EDNRBP24530 442 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 NBPF20Q3BBV1 942 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 USH1GQ495M9 461 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 KRT40Q6A162 431 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 B4GALNT3Q6L9W6 998 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 PHOSPHO2Q8TCD6 241 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 RILPL2Q969X0 211 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 UBA5Q9GZZ9 404 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 ZBTB47Q9UFB7 747 aaPredicted RBP16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 NOD1Q9Y239 953 aa16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 COL4A4P53420 1690 aaPredicted RBP16.26■□□□□ 0.19
SQSTM1-208ENST00000485412 LOC102724159A0A0B4J2E5 919 aa16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 PITPNM1O00562 1244 aa16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 TAP1Q03518 808 aa16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 PPP2R5BQ15173 497 aa16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 PWP2Q15269 919 aaKnown RBP16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 MFSD6Q6ZSS7 791 aa16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 HERC6Q8IVU3 1022 aa16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 HLA-CQ95604 372 aa16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 MPHOSPH6Q99547 160 aaKnown RBP16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 EPHX3Q9H6B9 360 aa16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 COL20A1Q9P218 1284 aa16.25■□□□□ 0.19
SQSTM1-208ENST00000485412 WDR19Q8NEZ3 1342 aa16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 NKRFO15226 690 aaKnown RBP eCLIP16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 KPNA6O60684 536 aa16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 IQCF3P0C7M6 154 aa16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 SDSP20132 328 aa16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 KCNJ6P48051 423 aa16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 CHMP4BP1P59074 171 aa16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 PDE4DQ08499 809 aa16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 BFSP2Q13515 415 aa16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 NFRKBQ6P4R8 1299 aa16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 LRFN3Q9BTN0 628 aa16.24■□□□□ 0.19
SQSTM1-208ENST00000485412 TLL1O43897 1013 aa16.23■□□□□ 0.19
SQSTM1-208ENST00000485412 BAIAP3O94812 1187 aa16.23■□□□□ 0.19
SQSTM1-208ENST00000485412 ARHGEF15O94989 841 aa16.23■□□□□ 0.19
SQSTM1-208ENST00000485412 IGHDP01880 384 aa16.23■□□□□ 0.19
SQSTM1-208ENST00000485412 PTPN11Q06124 597 aaPredicted RBP16.23■□□□□ 0.19
SQSTM1-208ENST00000485412 GRB10Q13322 594 aa16.23■□□□□ 0.19
SQSTM1-208ENST00000485412 TMEM31Q5JXX7 168 aa16.23■□□□□ 0.19
SQSTM1-208ENST00000485412 PLEKHM2Q8IWE5 1019 aa16.23■□□□□ 0.19
SQSTM1-208ENST00000485412 SMC5Q8IY18 1101 aa16.23■□□□□ 0.19
SQSTM1-208ENST00000485412 IL25Q9H293 177 aa16.23■□□□□ 0.19
SQSTM1-208ENST00000485412 B4E1Z4 1266 aa16.22■□□□□ 0.19
SQSTM1-208ENST00000485412 KDM4AO75164 1064 aa16.22■□□□□ 0.19
SQSTM1-208ENST00000485412 TXNP10599 105 aaKnown RBP16.22■□□□□ 0.19
SQSTM1-208ENST00000485412 HOXD11P31277 338 aaPredicted RBP16.22■□□□□ 0.19
SQSTM1-208ENST00000485412 CDC37Q16543 378 aaPredicted RBP16.22■□□□□ 0.19
SQSTM1-208ENST00000485412 CCDC155Q8N6L0 562 aa16.22■□□□□ 0.19
SQSTM1-208ENST00000485412 SCFD2Q8WU76 684 aa16.22■□□□□ 0.19
SQSTM1-208ENST00000485412 TTC14Q96N46 770 aa16.22■□□□□ 0.19
SQSTM1-208ENST00000485412 TAAR1Q96RJ0 339 aa16.22■□□□□ 0.19
SQSTM1-208ENST00000485412 CTAGE1Q96RT6 745 aa16.22■□□□□ 0.19
SQSTM1-208ENST00000485412 BAZ2BQ9UIF8 2168 aaKnown RBP16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 A6NJR5 290 aa16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 B4DLN1 442 aa16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 MRPL12P52815 198 aaKnown RBP16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 CCDC62Q6P9F0 684 aa16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 CWC27Q6UX04 472 aaKnown RBP16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 SPRED2Q7Z698 418 aa16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 ADGRF4Q8IZF3 695 aa16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 PNMA1Q8ND90 353 aa16.21■□□□□ 0.19
SQSTM1-208ENST00000485412 DNERQ8NFT8 737 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms