RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ASTN1O14525 1302 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 TRIP12Q14669 1992 aaPredicted RBP8.25□□□□□ -1.09
VPS41-208ENST00000448833 A6NJR5 290 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 B4E1Z4 1266 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 TXNP10599 105 aaKnown RBP8.25□□□□□ -1.09
VPS41-208ENST00000448833 ACTN1P12814 892 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 FOSL2P15408 326 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 CSF2RAP15509 400 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 EDNRBP24530 442 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 DNAJB2P25686 324 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 RFC2P35250 354 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 EPHB4P54760 987 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 STXBP2Q15833 593 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 TMEM240Q5SV17 173 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 IFIT1BQ5T764 474 aaKnown RBP8.25□□□□□ -1.09
VPS41-208ENST00000448833 KCNV1Q6PIU1 500 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 ZNF365Q70YC5 407 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 FBXO11Q86XK2 927 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 TBC1D10CQ8IV04 446 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS41-208ENST00000448833 ADGRF4Q8IZF3 695 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 CCDC155Q8N6L0 562 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 ENAHQ8N8S7 591 aaPredicted RBP8.25□□□□□ -1.09
VPS41-208ENST00000448833 RETREG2Q8NC44 543 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 EXOC6Q8TAG9 804 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 HERVK_113Q902F9 699 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 SYMPKQ92797 1274 aaKnown RBP8.25□□□□□ -1.09
VPS41-208ENST00000448833 TIFAQ96CG3 184 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS41-208ENST00000448833 ZKSCAN3Q9BRR0 538 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 AMNQ9BXJ7 453 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 PRUNE2Q8WUY3 3088 aa8.25□□□□□ -1.09
VPS41-208ENST00000448833 EYSQ5T1H1 3165 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 SCN10AQ9Y5Y9 1956 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 GBF1Q92538 1859 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 EIF3JO75822 258 aaKnown RBP8.24□□□□□ -1.09
VPS41-208ENST00000448833 PARNO95453 639 aaKnown RBP8.24□□□□□ -1.09
VPS41-208ENST00000448833 MYL3P08590 195 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 GOLGA8HP0CJ92 632 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 CASTP20810 708 aaKnown RBP8.24□□□□□ -1.09
VPS41-208ENST00000448833 CYP2C18P33260 490 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 PURAQ00577 322 aaKnown RBP8.24□□□□□ -1.09
VPS41-208ENST00000448833 BFSP2Q13515 415 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 CDC37Q16543 378 aaPredicted RBP8.24□□□□□ -1.09
VPS41-208ENST00000448833 USH1GQ495M9 461 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 RASIP1Q5U651 963 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 SLC30A10Q6XR72 485 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 MAFAQ8NHW3 353 aaPredicted RBP8.24□□□□□ -1.09
VPS41-208ENST00000448833 RMDN3Q96TC7 470 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 GAS2L1Q99501 681 aaPredicted RBP8.24□□□□□ -1.09
VPS41-208ENST00000448833 NOC4LQ9BVI4 516 aaKnown RBP8.24□□□□□ -1.09
VPS41-208ENST00000448833 PPP1R12CQ9BZL4 782 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 UBA5Q9GZZ9 404 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 ALDH8A1Q9H2A2 487 aaPredicted RBP8.24□□□□□ -1.09
VPS41-208ENST00000448833 ZNF576Q9H609 170 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 NOD1Q9Y239 953 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 SLC4A7Q9Y6M7 1214 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 TNKSO95271 1327 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 NEDD4P46934 1319 aa8.24□□□□□ -1.09
VPS41-208ENST00000448833 KLRF2D3W0D1 207 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 B4GALT4O60513 344 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 GH1P01241 217 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 TGFB3P10600 412 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 IRX5P78411 483 aaPredicted RBP8.23□□□□□ -1.09
VPS41-208ENST00000448833 FAM47CQ5HY64 1035 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 TTC22Q5TAA0 569 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 ARHGEF16Q5VV41 709 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 C16orf59Q7L2K0 433 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 RASGRP2Q7LDG7 609 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 RALYLQ86SE5 291 aaKnown RBP8.23□□□□□ -1.09
VPS41-208ENST00000448833 KATNAL1Q9BW62 490 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 TRPV6Q9H1D0 765 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 TTYH1Q9H313 450 aaPredicted RBP8.23□□□□□ -1.09
VPS41-208ENST00000448833 SLC28A3Q9HAS3 691 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 VAT1LQ9HCJ6 419 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 KAT6AQ92794 2004 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 GRIN2DO15399 1336 aa8.23□□□□□ -1.09
VPS41-208ENST00000448833 KIF28PB7ZC32 967 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 ZBTB5O15062 677 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 ACRP10323 421 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 CCL23P55773 120 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 PSMC6P62333 389 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 GHRHRQ02643 423 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 LAMC2Q13753 1193 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 DGKDQ16760 1214 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 QRICH1Q2TAL8 776 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 NBPF20Q3BBV1 942 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 TMTC2Q8N394 836 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 NCOA7Q8NI08 942 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 PHOSPHO2Q8TCD6 241 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 SYTL5Q8TDW5 730 aaPredicted RBP8.22□□□□□ -1.09
VPS41-208ENST00000448833 MYLIPQ8WY64 445 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 EMID1Q96A84 441 aaPredicted RBP8.22□□□□□ -1.09
VPS41-208ENST00000448833 PURBQ96QR8 312 aaKnown RBP8.22□□□□□ -1.09
VPS41-208ENST00000448833 MTA3Q9BTC8 594 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 TSPYL2Q9H2G4 693 aaPredicted RBP8.22□□□□□ -1.09
VPS41-208ENST00000448833 JMJD4Q9H9V9 463 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 SUPT16HQ9Y5B9 1047 aaKnown RBP8.22□□□□□ -1.09
VPS41-208ENST00000448833 PCDHA11Q9Y5I1 949 aa8.22□□□□□ -1.09
VPS41-208ENST00000448833 PCDHA1Q9Y5I3 950 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms