RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 MLC1Q15049 377 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 NKG7Q16617 165 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 TMEM67Q5HYA8 995 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 VN1R5Q7Z5H4 357 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 PNMA8AQ86V59 439 aaPredicted RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 PPM1NQ8N819 430 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 JPH3Q8WXH2 748 aaPredicted RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 ZNF669Q96BR6 464 aaPredicted RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 ZDHHC15Q96MV8 337 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 MTFR1LQ9H019 292 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 BTG4Q9NY30 223 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 AP4E1Q9UPM8 1137 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 ANKRD50Q9ULJ7 1429 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 ANKRD30BQ9BXX2 1392 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 TRBV23-1A0A0A0MS06 115 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 LCHNA4D1U4 455 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 GABRDO14764 452 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 F2P00734 622 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 THBS1P07996 1170 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 SLC5A1P13866 664 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 ITPKAP23677 461 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 RXRGP48443 463 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 SCAND1P57086 179 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 LLGL1Q15334 1064 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 SLC4A8Q2Y0W8 1093 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 NOL9Q5SY16 702 aaKnown RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 ANO1Q5XXA6 986 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 HEATR6Q6AI08 1181 aaKnown RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 CCDC144CPQ8IYA2 1237 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 SLC7A14Q8TBB6 771 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 HAUS7Q99871 368 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 NOL6Q9H6R4 1146 aaKnown RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 SSU72Q9NP77 194 aaKnown RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 LUZP4Q9P127 313 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 RGPD5Q99666 1765 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 PAPLNO95428 1278 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 TRIM27P14373 513 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 NME2P22392 152 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 ACAP2Q15057 778 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 DIEXFQ68CQ4 756 aaKnown RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 PGM2L1Q6PCE3 622 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 NSMFQ6X4W1 530 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 USP53Q70EK8 1073 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 LRRC47Q8N1G4 583 aaKnown RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 GPATCH11Q8N954 259 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 ZSCAN18Q8TBC5 510 aaPredicted RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 STRBPQ96SI9 672 aaKnown RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 PLCD4Q9BRC7 762 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 CLIC5Q9NZA1 410 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 H2AFY2Q9P0M6 372 aaPredicted RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 GPR55Q9Y2T6 319 aaPredicted RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 TNKSO95271 1327 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 A0A1W2PQU0 124 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 CTSBP07858 339 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 GSTP1P09211 210 aaKnown RBP3.19□□□□□ -1.9
MCF2-204ENST00000414978 PF4V1P10720 104 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 GBP1P32455 592 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 CABP4P57796 275 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 DBN1Q16643 649 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 ARHGAP29Q52LW3 1261 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 FAM102BQ5T8I3 360 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 ZNF598Q86UK7 904 aaKnown RBP3.19□□□□□ -1.9
MCF2-204ENST00000414978 CDAN1Q8IWY9 1227 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 MAGEB6Q8N7X4 407 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 PI4K2BQ8TCG2 481 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 SLC16A10Q8TF71 515 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 PKNOX2Q96KN3 472 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 CRTAC1Q9NQ79 661 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 RAD18Q9NS91 495 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 PCDHGC4Q9Y5F7 938 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 PCDHA8Q9Y5H6 950 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 SLC22A31A6NKX4 558 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 NEURL1BA8MQ27 555 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 CCER2I3L3R5 266 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 SOX1O00570 391 aaPredicted RBP3.19□□□□□ -1.9
MCF2-204ENST00000414978 ST8SIA5O15466 376 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 NBNO60934 754 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 MYL1P05976 194 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 ESRRAP11474 423 aaPredicted RBP3.19□□□□□ -1.9
MCF2-204ENST00000414978 DRD2P14416 443 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 ARNTP27540 789 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 CDC27P30260 824 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 GPC1P35052 558 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 PTSQ03393 145 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 BAHD1Q8TBE0 780 aaPredicted RBP3.19□□□□□ -1.9
MCF2-204ENST00000414978 SYT17Q9BSW7 474 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 CCDC86Q9H6F5 360 aaKnown RBP3.19□□□□□ -1.9
MCF2-204ENST00000414978 EFCC1Q9HA90 598 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 JPH1Q9HDC5 661 aaPredicted RBP3.19□□□□□ -1.9
MCF2-204ENST00000414978 KIAA0232Q92628 1395 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 CRTAMO95727 393 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 LDHCP07864 332 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 YBX3P16989 372 aaKnown RBP eCLIP3.19□□□□□ -1.9
MCF2-204ENST00000414978 PPM1FP49593 454 aaPredicted RBP3.19□□□□□ -1.9
MCF2-204ENST00000414978 C1orf122Q6ZSJ8 110 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 C8orf86Q6ZUL3 223 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 PPFIBP1Q86W92 1011 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 FAM43AQ8N2R8 423 aa3.19□□□□□ -1.9
MCF2-204ENST00000414978 CISD2Q8N5K1 135 aaKnown RBP3.19□□□□□ -1.9
MCF2-204ENST00000414978 USP33Q8TEY7 942 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms