RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 FAM47CQ5HY64 1035 aa19.01■□□□□ 0.63
CUX2-202ENST00000397643 VPS53Q5VIR6 699 aa19.01■□□□□ 0.63
CUX2-202ENST00000397643 COPS5Q92905 334 aa19.01■□□□□ 0.63
CUX2-202ENST00000397643 CTAGE1Q96RT6 745 aa19.01■□□□□ 0.63
CUX2-202ENST00000397643 PTPDC1A2A3K4 754 aa19■□□□□ 0.63
CUX2-202ENST00000397643 PTPN11Q06124 597 aaPredicted RBP19■□□□□ 0.63
CUX2-202ENST00000397643 GRB10Q13322 594 aa19■□□□□ 0.63
CUX2-202ENST00000397643 PPP2R5BQ15173 497 aa19■□□□□ 0.63
CUX2-202ENST00000397643 LRFN3Q9BTN0 628 aa19■□□□□ 0.63
CUX2-202ENST00000397643 GPHNQ9NQX3 736 aaPredicted RBP19■□□□□ 0.63
CUX2-202ENST00000397643 FRMPD2Q68DX3 1309 aaPredicted RBP19■□□□□ 0.63
CUX2-202ENST00000397643 NKRFO15226 690 aaKnown RBP eCLIP18.99■□□□□ 0.63
CUX2-202ENST00000397643 RANBP6O60518 1105 aaKnown RBP18.99■□□□□ 0.63
CUX2-202ENST00000397643 BAIAP3O94812 1187 aa18.99■□□□□ 0.63
CUX2-202ENST00000397643 ARIH2O95376 493 aa18.99■□□□□ 0.63
CUX2-202ENST00000397643 CALML3P27482 149 aa18.99■□□□□ 0.63
CUX2-202ENST00000397643 GPNMBQ14956 572 aa18.99■□□□□ 0.63
CUX2-202ENST00000397643 KHSRPQ92945 711 aaKnown RBP eCLIP18.99■□□□□ 0.63
CUX2-202ENST00000397643 CRBNQ96SW2 442 aa18.99■□□□□ 0.63
CUX2-202ENST00000397643 TMEM47Q9BQJ4 181 aa18.99■□□□□ 0.63
CUX2-202ENST00000397643 TRIP12Q14669 1992 aaPredicted RBP18.99■□□□□ 0.63
CUX2-202ENST00000397643 LCHNA4D1U4 455 aa18.98■□□□□ 0.63
CUX2-202ENST00000397643 KPNA6O60684 536 aa18.98■□□□□ 0.63
CUX2-202ENST00000397643 NEFLP07196 543 aa18.98■□□□□ 0.63
CUX2-202ENST00000397643 RPS6P62753 249 aaKnown RBP18.98■□□□□ 0.63
CUX2-202ENST00000397643 RNF207Q6ZRF8 634 aa18.98■□□□□ 0.63
CUX2-202ENST00000397643 RETREG2Q8NC44 543 aa18.98■□□□□ 0.63
CUX2-202ENST00000397643 SCFD2Q8WU76 684 aa18.98■□□□□ 0.63
CUX2-202ENST00000397643 FTOQ9C0B1 505 aaKnown RBP eCLIP18.98■□□□□ 0.63
CUX2-202ENST00000397643 GPCPD1Q9NPB8 672 aa18.98■□□□□ 0.63
CUX2-202ENST00000397643 C11orf16Q9NQ32 467 aa18.98■□□□□ 0.63
CUX2-202ENST00000397643 RAD50Q92878 1312 aa18.98■□□□□ 0.63
CUX2-202ENST00000397643 SALL3Q9BXA9 1300 aa18.98■□□□□ 0.63
CUX2-202ENST00000397643 PDHBP11177 359 aa18.97■□□□□ 0.63
CUX2-202ENST00000397643 TOP1P11387 765 aaKnown RBP18.97■□□□□ 0.63
CUX2-202ENST00000397643 PDE4DQ08499 809 aa18.97■□□□□ 0.63
CUX2-202ENST00000397643 BRDTQ58F21 947 aaPredicted RBP18.97■□□□□ 0.63
CUX2-202ENST00000397643 DNERQ8NFT8 737 aa18.97■□□□□ 0.63
CUX2-202ENST00000397643 HLA-CQ95604 372 aa18.97■□□□□ 0.63
CUX2-202ENST00000397643 ARIH1Q9Y4X5 557 aaPredicted RBP18.97■□□□□ 0.63
CUX2-202ENST00000397643 WDR19Q8NEZ3 1342 aa18.97■□□□□ 0.63
CUX2-202ENST00000397643 WDR5P61964 334 aaKnown RBP18.96■□□□□ 0.63
CUX2-202ENST00000397643 IRX6P78412 446 aaPredicted RBP18.96■□□□□ 0.63
CUX2-202ENST00000397643 BFSP2Q13515 415 aa18.96■□□□□ 0.63
CUX2-202ENST00000397643 TMCO2Q7Z6W1 182 aaPredicted RBP18.96■□□□□ 0.63
CUX2-202ENST00000397643 DHX38Q92620 1227 aaKnown RBP18.96■□□□□ 0.63
CUX2-202ENST00000397643 PIEZO1Q92508 2521 aa18.96■□□□□ 0.63
CUX2-202ENST00000397643 KIF28PB7ZC32 967 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 RBAK-RBAKDNI3L0D1 243 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 SNHG28P0DPA3 235 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 TXNP10599 105 aaKnown RBP18.95■□□□□ 0.62
CUX2-202ENST00000397643 RBL2Q08999 1139 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 ZNF543Q08ER8 600 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 ALX1Q15699 326 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 PTGISQ16647 500 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 TCTN1Q2MV58 587 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 GDF6Q6KF10 455 aaPredicted RBP18.95■□□□□ 0.62
CUX2-202ENST00000397643 CCDC62Q6P9F0 684 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 SESTD1Q86VW0 696 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 CAGE1Q8TC20 777 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 AFAP1L1Q8TED9 768 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 GDPD5Q8WTR4 605 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 TCP11L1Q9NUJ3 509 aa18.95■□□□□ 0.62
CUX2-202ENST00000397643 MMP3P08254 477 aa18.94■□□□□ 0.62
CUX2-202ENST00000397643 MX1P20591 662 aa18.94■□□□□ 0.62
CUX2-202ENST00000397643 DEFB103AP81534 67 aa18.94■□□□□ 0.62
CUX2-202ENST00000397643 TMEM31Q5JXX7 168 aa18.94■□□□□ 0.62
CUX2-202ENST00000397643 KAT2BQ92831 832 aa18.94■□□□□ 0.62
CUX2-202ENST00000397643 CD320Q9NPF0 282 aa18.94■□□□□ 0.62
CUX2-202ENST00000397643 PNMA2Q9UL42 364 aa18.94■□□□□ 0.62
CUX2-202ENST00000397643 NOD1Q9Y239 953 aa18.94■□□□□ 0.62
CUX2-202ENST00000397643 MUC6Q6W4X9 2439 aa18.93■□□□□ 0.62
CUX2-202ENST00000397643 CXCL10P02778 98 aa18.93■□□□□ 0.62
CUX2-202ENST00000397643 KCNJ6P48051 423 aa18.93■□□□□ 0.62
CUX2-202ENST00000397643 ARHGAP1Q07960 439 aa18.93■□□□□ 0.62
CUX2-202ENST00000397643 AAMPQ13685 434 aa18.93■□□□□ 0.62
CUX2-202ENST00000397643 EXOC6Q8TAG9 804 aa18.93■□□□□ 0.62
CUX2-202ENST00000397643 AFG1LQ8WV93 481 aa18.93■□□□□ 0.62
CUX2-202ENST00000397643 HCN4Q9Y3Q4 1203 aa18.93■□□□□ 0.62
CUX2-202ENST00000397643 PCDHB15Q9Y5E8 787 aa18.93■□□□□ 0.62
CUX2-202ENST00000397643 NBNO60934 754 aa18.92■□□□□ 0.62
CUX2-202ENST00000397643 FGAP02671 866 aa18.92■□□□□ 0.62
CUX2-202ENST00000397643 SELPP16109 830 aa18.92■□□□□ 0.62
CUX2-202ENST00000397643 RRP12Q5JTH9 1297 aaKnown RBP18.92■□□□□ 0.62
CUX2-202ENST00000397643 LRRC8DQ7L1W4 858 aa18.92■□□□□ 0.62
CUX2-202ENST00000397643 CCDC155Q8N6L0 562 aa18.92■□□□□ 0.62
CUX2-202ENST00000397643 MPHOSPH6Q99547 160 aaKnown RBP18.92■□□□□ 0.62
CUX2-202ENST00000397643 TOMM22Q9NS69 142 aa18.92■□□□□ 0.62
CUX2-202ENST00000397643 LMCD1Q9NZU5 365 aa18.92■□□□□ 0.62
CUX2-202ENST00000397643 SIP14410 1827 aa18.91■□□□□ 0.62
CUX2-202ENST00000397643 GPR37L1O60883 481 aa18.91■□□□□ 0.62
CUX2-202ENST00000397643 GJB5O95377 273 aa18.91■□□□□ 0.62
CUX2-202ENST00000397643 CHMP4BP1P59074 171 aa18.91■□□□□ 0.62
CUX2-202ENST00000397643 CNKSR3Q6P9H4 555 aa18.91■□□□□ 0.62
CUX2-202ENST00000397643 TRAF7Q6Q0C0 670 aa18.91■□□□□ 0.62
CUX2-202ENST00000397643 RGS22Q8NE09 1264 aa18.91■□□□□ 0.62
CUX2-202ENST00000397643 SUGCTQ9HAC7 445 aa18.91■□□□□ 0.62
CUX2-202ENST00000397643 COL20A1Q9P218 1284 aa18.91■□□□□ 0.62
CUX2-202ENST00000397643 ZMYM6O95789 1325 aa18.91■□□□□ 0.62
CUX2-202ENST00000397643 KIAA1217Q5T5P2 1943 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms