RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 BLOC1S4Q9NUP1 217 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 MYMKA6NI61 221 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 LDHBP07195 334 aaKnown RBP14.13□□□□□ -0.15
SHMT1-205ENST00000395684 PPP1R2P41236 205 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 MAPK8IP2Q13387 824 aaPredicted RBP14.13□□□□□ -0.15
SHMT1-205ENST00000395684 USP17L2Q6R6M4 530 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 POTEDQ86YR6 584 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 SPATA4Q8NEY3 305 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 SPZ1Q9BXG8 430 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 SAP30BPQ9UHR5 308 aaKnown RBP14.13□□□□□ -0.15
SHMT1-205ENST00000395684 SALL4Q9UJQ4 1053 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 FAM184BQ9ULE4 1060 aa14.13□□□□□ -0.15
SHMT1-205ENST00000395684 USO1O60763 962 aaKnown RBP14.12□□□□□ -0.15
SHMT1-205ENST00000395684 TACC1O75410 805 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 ERCC3P19447 782 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 CXCR5P32302 372 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 TXKP42681 527 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 GRB10Q13322 594 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 IQCEQ6IPM2 695 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 NFRKBQ6P4R8 1299 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 ZNF572Q7Z3I7 529 aaPredicted RBP14.12□□□□□ -0.15
SHMT1-205ENST00000395684 SMARCC1Q92922 1105 aaPredicted RBP14.12□□□□□ -0.15
SHMT1-205ENST00000395684 PSMB7Q99436 277 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 LZTS2Q9BRK4 669 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 MMRN2Q9H8L6 949 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 VAT1LQ9HCJ6 419 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 SMARCAL1Q9NZC9 954 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 BIN2Q9UBW5 565 aaPredicted RBP14.12□□□□□ -0.15
SHMT1-205ENST00000395684 CASZ1Q86V15 1759 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 ANKRD65E5RJM6 399 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 LCA5LO95447 670 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 PRLRP16471 622 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 TM4SF1P30408 202 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 NT5C2P49902 561 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 MAPKAPK5Q8IW41 473 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 RRP36Q96EU6 259 aaKnown RBP14.12□□□□□ -0.15
SHMT1-205ENST00000395684 OSBPL9Q96SU4 736 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 C6orf50Q9HD87 102 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 EHD2Q9NZN4 543 aa14.12□□□□□ -0.15
SHMT1-205ENST00000395684 COL16A1Q07092 1604 aaPredicted RBP14.12□□□□□ -0.15
SHMT1-205ENST00000395684 GOLGA6BA6NDN3 693 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 LRRC53A6NM62 1247 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 GNA11P29992 359 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 MATR3P43243 847 aaKnown RBP eCLIP14.11□□□□□ -0.15
SHMT1-205ENST00000395684 SLC7A5Q01650 507 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 ATP2B2Q01814 1243 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 SV2BQ7L1I2 683 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 DYMQ7RTS9 669 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 CALML4Q96GE6 196 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 PNMA5Q96PV4 448 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 TMEM260Q9NX78 707 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 SRP68Q9UHB9 627 aaKnown RBP14.11□□□□□ -0.15
SHMT1-205ENST00000395684 WNK3Q9BYP7 1800 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 PPFIA4O75335 1185 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 ITIH3Q06033 890 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 SND1Q7KZF4 910 aaKnown RBP eCLIP14.11□□□□□ -0.15
SHMT1-205ENST00000395684 RRAGAQ7L523 313 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 NBPF5PQ86XG9 351 aaPredicted RBP14.11□□□□□ -0.15
SHMT1-205ENST00000395684 AMOTL1Q8IY63 956 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 ANKRD13CQ8N6S4 541 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 IQCDQ96DY2 449 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 MTMR9Q96QG7 549 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 DEF6Q9H4E7 631 aa14.11□□□□□ -0.15
SHMT1-205ENST00000395684 NCK2O43639 380 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 AKR1B10O60218 316 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 MAN2A1Q16706 1144 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 SKIDA1Q1XH10 827 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 UNC13DQ70J99 1090 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 CCDC155Q8N6L0 562 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 GLIS3Q8NEA6 775 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 BAP1Q92560 729 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 PIGSQ96S52 555 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 MYH1P12882 1939 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 EDIL3O43854 480 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 SHOX2O60902 331 aaPredicted RBP14.1□□□□□ -0.15
SHMT1-205ENST00000395684 PPP4CP60510 307 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 CCDC88AQ3V6T2 1871 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 SETDB2Q96T68 719 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 EYA3Q99504 573 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 NUDT12Q9BQG2 462 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 THRAP3Q9Y2W1 955 aaKnown RBP14.1□□□□□ -0.15
SHMT1-205ENST00000395684 ROBO1Q9Y6N7 1651 aa14.1□□□□□ -0.15
SHMT1-205ENST00000395684 GOLGA6CA6NDK9 693 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 BAG3O95817 575 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 GOLGA6DP0CG33 693 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 MAGEA1P43355 309 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 CDK8P49336 464 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 GFPT1Q06210 699 aaPredicted RBP14.09□□□□□ -0.15
SHMT1-205ENST00000395684 ASTE1Q2TB18 679 aaPredicted RBP14.09□□□□□ -0.15
SHMT1-205ENST00000395684 CCDC70Q6NSX1 233 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 LRRC55Q6ZSA7 311 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 CCDC84Q86UT8 332 aaPredicted RBP14.09□□□□□ -0.15
SHMT1-205ENST00000395684 FAM76AQ8TAV0 307 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 WDR66Q8TBY9 1149 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 NYXQ9GZU5 481 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 UBA5Q9GZZ9 404 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 GOLGA6AQ9NYA3 693 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 MAST2Q6P0Q8 1798 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 PVALEFA0A1B0GWK0 134 aa14.09□□□□□ -0.15
SHMT1-205ENST00000395684 SLC37A4O43826 429 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms