RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 HMGB2P26583 209 aaKnown RBP12.85□□□□□ -0.35
SYNPO-202ENST00000394243 NEK2P51955 445 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 CUL1Q13616 776 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 TRIP13Q15645 432 aaPredicted RBP12.85□□□□□ -0.35
SYNPO-202ENST00000394243 ARHGAP18Q8N392 663 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 RETREG2Q8NC44 543 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 ENOX1Q8TC92 643 aaKnown RBP12.85□□□□□ -0.35
SYNPO-202ENST00000394243 PPIP5K1Q6PFW1 1433 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 DR1Q01658 176 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 RGS9BPQ6ZS82 235 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 NLRP14Q86W24 1093 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 CNPY4Q8N129 248 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 SUCLG2Q96I99 432 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 GSDMAQ96QA5 445 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 ZMYM3Q14202 1370 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 ITGA6P23229 1130 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 ZAP70P43403 619 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 RINT1Q6NUQ1 792 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 FAM89AQ96GI7 184 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 MYO1FO00160 1098 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 OLFM3Q96PB7 478 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 RIOK1Q9BRS2 568 aaKnown RBP12.85□□□□□ -0.35
SYNPO-202ENST00000394243 EPC1Q9H2F5 836 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 C1orf112Q9NSG2 853 aa12.85□□□□□ -0.35
SYNPO-202ENST00000394243 SRGAP2O75044 1071 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 N4BP1O75113 896 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 PSMC1P62191 440 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 GRAMD1CQ8IYS0 662 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 METTL14Q9HCE5 456 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 DNAJC17Q9NVM6 304 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 PAIP2BQ9ULR5 123 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 LZTS1Q9Y250 596 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 PPP6R2O75170 966 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 SLFN14P0C7P3 912 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 EIF4A3P38919 411 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 SLC12A1Q13621 1099 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 FAM47AQ5JRC9 791 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 C1orf146Q5VVC0 180 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 ATG16L1Q676U5 607 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 TOGARAM2Q6ZUX3 1019 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 FAM47EQ6ZV65 393 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 TMEM60Q9H2L4 133 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 ADAMTS2O95450 1211 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 CYP27A1Q02318 531 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 SLC39A14Q15043 492 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 PPARGC1AQ9UBK2 798 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 ZFP69BQ9UJL9 534 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 PMS1P54277 932 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 MAGOHP61326 146 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 YWHAEP62258 255 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 RFX6Q8HWS3 928 aa12.84□□□□□ -0.35
SYNPO-202ENST00000394243 METTL22Q9BUU2 404 aaPredicted RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 FTOQ9C0B1 505 aaKnown RBP eCLIP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 UPF3AQ9H1J1 476 aaKnown RBP12.84□□□□□ -0.35
SYNPO-202ENST00000394243 PRAG1Q86YV5 1406 aa12.83□□□□□ -0.35
SYNPO-202ENST00000394243 CPP00450 1065 aa12.83□□□□□ -0.35
SYNPO-202ENST00000394243 CCDC159P0C7I6 412 aa12.83□□□□□ -0.35
SYNPO-202ENST00000394243 PDIA3P30101 505 aaKnown RBP12.83□□□□□ -0.35
SYNPO-202ENST00000394243 SLC30A9Q6PML9 568 aa12.83□□□□□ -0.35
SYNPO-202ENST00000394243 HAUS2Q9NVX0 235 aa12.83□□□□□ -0.35
SYNPO-202ENST00000394243 PCDHA12Q9UN75 941 aa12.83□□□□□ -0.35
SYNPO-202ENST00000394243 RIMBP2O15034 1052 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 OR52Z1P0C646 297 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 MUM1L1Q5H9M0 696 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 GINS2Q9Y248 185 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 ARHGAP10A1A4S6 786 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 MAPK4P31152 587 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 ELF1P32519 619 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 NSFP46459 744 aaKnown RBP12.83□□□□□ -0.36
SYNPO-202ENST00000394243 SPARCL1Q14515 664 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 LRRC59Q96AG4 307 aaKnown RBP12.83□□□□□ -0.36
SYNPO-202ENST00000394243 ADCY9O60503 1353 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 DAB2P98082 770 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 ADCK5Q3MIX3 580 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 SESTD1Q86VW0 696 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 FAM133AQ8N9E0 248 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 ZC3H12CQ9C0D7 883 aaKnown RBP12.83□□□□□ -0.36
SYNPO-202ENST00000394243 ANKRD2Q9GZV1 360 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 KIF14Q15058 1648 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 KRT14P02533 472 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 AP2B1P63010 937 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 ITKQ08881 620 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 ATP5JP18859 108 aa12.83□□□□□ -0.36
SYNPO-202ENST00000394243 CFAP73A6NFT4 308 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 DLATP10515 647 aaKnown RBP12.82□□□□□ -0.36
SYNPO-202ENST00000394243 ATP1A3P13637 1013 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 FAM26FQ5R3K3 315 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 USP19O94966 1318 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 MAGI1Q96QZ7 1491 aaPredicted RBP12.82□□□□□ -0.36
SYNPO-202ENST00000394243 KDRP35968 1356 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 MAP3K7CLP57077 242 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 CRLF3Q8IUI8 442 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 PSPC1Q8WXF1 523 aaKnown RBP12.82□□□□□ -0.36
SYNPO-202ENST00000394243 ZNF653Q96CK0 615 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 LRRC37BQ96QE4 947 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 TRIM55Q9BYV6 548 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 TRPV6Q9H1D0 765 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 DDX28Q9NUL7 540 aaKnown RBP12.82□□□□□ -0.36
SYNPO-202ENST00000394243 PER1O15534 1290 aaPredicted RBP12.82□□□□□ -0.36
SYNPO-202ENST00000394243 P4HA1P13674 534 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms