RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ORC2Q13416 577 aaPredicted RBP22.6■■□□□ 1.21
CLN3-205ENST00000359984 SKOR2Q2VWA4 1001 aaPredicted RBP22.6■■□□□ 1.21
CLN3-205ENST00000359984 CYP4F22Q6NT55 531 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 KRI1Q8N9T8 703 aaKnown RBP22.6■■□□□ 1.21
CLN3-205ENST00000359984 CLIC6Q96NY7 704 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 MAF1Q9H063 256 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 R3HDMLQ9H3Y0 253 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 EHMT1Q9H9B1 1298 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 CYP39A1Q9NYL5 469 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 FBXO40Q9UH90 709 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 SRPRBQ9Y5M8 271 aaKnown RBP22.6■■□□□ 1.21
CLN3-205ENST00000359984 NEMFO60524 1076 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 CYP3A4P08684 503 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 ERCC3P19447 782 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 GRIN1Q05586 938 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 PAXIP1Q6ZW49 1069 aaPredicted RBP22.6■■□□□ 1.21
CLN3-205ENST00000359984 ANKRD13CQ8N6S4 541 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 TAAR1Q96RJ0 339 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 ZIC5Q96T25 663 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 NAP1L4Q99733 375 aaKnown RBP22.6■■□□□ 1.21
CLN3-205ENST00000359984 ZCCHC17Q9NP64 241 aaKnown RBP22.6■■□□□ 1.21
CLN3-205ENST00000359984 CREBZFQ9NS37 354 aa22.6■■□□□ 1.21
CLN3-205ENST00000359984 CYP3A7-CYP3A51PA0A087WV96 503 aa22.59■■□□□ 1.21
CLN3-205ENST00000359984 SLC37A4O43826 429 aa22.59■■□□□ 1.21
CLN3-205ENST00000359984 CUTAO60888 179 aa22.59■■□□□ 1.21
CLN3-205ENST00000359984 GCFC2P16383 781 aaKnown RBP22.59■■□□□ 1.21
CLN3-205ENST00000359984 CYP3A7P24462 503 aa22.59■■□□□ 1.21
CLN3-205ENST00000359984 APLP1P51693 650 aa22.59■■□□□ 1.21
CLN3-205ENST00000359984 UBXN2AP68543 259 aa22.59■■□□□ 1.21
CLN3-205ENST00000359984 IFNL1Q8IU54 200 aa22.59■■□□□ 1.21
CLN3-205ENST00000359984 GPRC5AQ8NFJ5 357 aa22.59■■□□□ 1.21
CLN3-205ENST00000359984 PURBQ96QR8 312 aaKnown RBP22.59■■□□□ 1.21
CLN3-205ENST00000359984 RPTORQ8N122 1335 aa22.59■■□□□ 1.21
CLN3-205ENST00000359984 RBBP6Q7Z6E9 1792 aaKnown RBP22.59■■□□□ 1.21
CLN3-205ENST00000359984 A0A1W2PQ27 194 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 A0A1W2PQ64 194 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 A0A1W2PQD8 194 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 MBD3O95983 291 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 COPB2P35606 906 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 GRM1Q13255 1194 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 KLHL40Q2TBA0 621 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 MOXD1Q6UVY6 613 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 POTEDQ86YR6 584 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 MBOAT7Q96N66 472 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 MORF4L1Q9UBU8 362 aa22.58■■□□□ 1.21
CLN3-205ENST00000359984 DDX25Q9UHL0 483 aaKnown RBP22.58■■□□□ 1.21
CLN3-205ENST00000359984 LAD1O00515 517 aa22.58■■□□□ 1.2
CLN3-205ENST00000359984 CIITAP33076 1130 aa22.58■■□□□ 1.2
CLN3-205ENST00000359984 ARL6IP4Q66PJ3 421 aaKnown RBP22.58■■□□□ 1.2
CLN3-205ENST00000359984 CCAR1Q8IX12 1150 aaKnown RBP22.58■■□□□ 1.2
CLN3-205ENST00000359984 FERMT2Q96AC1 680 aa22.58■■□□□ 1.2
CLN3-205ENST00000359984 SREBF2Q12772 1141 aa22.57■■□□□ 1.2
CLN3-205ENST00000359984 IL17AQ16552 155 aa22.57■■□□□ 1.2
CLN3-205ENST00000359984 ANKRD35Q8N283 1001 aa22.57■■□□□ 1.2
CLN3-205ENST00000359984 FRMPD4Q14CM0 1322 aa22.57■■□□□ 1.2
CLN3-205ENST00000359984 RASSF10A6NK89 507 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 FAM86B1E9PN63 330 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 FAM86B2P0C5J1 330 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 LIG1P18858 919 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 TM4SF4P48230 202 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 DEFB115Q30KQ5 88 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 SHC4Q6S5L8 630 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.56■■□□□ 1.2
CLN3-205ENST00000359984 SHCBP1Q8NEM2 672 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 MTMR9Q96QG7 549 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 RMDN3Q96TC7 470 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 MROH8Q9H579 483 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 OR52Z1P0C646 297 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 CMA1P23946 247 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 GSE1Q14687 1217 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 CALCRLQ16602 461 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 FSIP1Q8NA03 581 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 ZNF579Q8NAF0 562 aaKnown RBP22.56■■□□□ 1.2
CLN3-205ENST00000359984 IL31RAQ8NI17 732 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 CSRNP2Q9H175 543 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 PORCNQ9H237 461 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 GOLPH3LQ9H4A5 285 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 PXMP2Q9NR77 195 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 PFASO15067 1338 aa22.56■■□□□ 1.2
CLN3-205ENST00000359984 VWA3AA6NCI4 1184 aa22.55■■□□□ 1.2
CLN3-205ENST00000359984 EIF2AK2P19525 551 aaKnown RBP22.55■■□□□ 1.2
CLN3-205ENST00000359984 ZNF76P36508 570 aa22.55■■□□□ 1.2
CLN3-205ENST00000359984 PRPHP41219 470 aa22.55■■□□□ 1.2
CLN3-205ENST00000359984 CCNA1P78396 465 aa22.55■■□□□ 1.2
CLN3-205ENST00000359984 TAF1CQ15572 869 aaPredicted RBP22.55■■□□□ 1.2
CLN3-205ENST00000359984 CYP2W1Q8TAV3 490 aa22.55■■□□□ 1.2
CLN3-205ENST00000359984 MRPS27Q92552 414 aaKnown RBP22.55■■□□□ 1.2
CLN3-205ENST00000359984 EFCC1Q9HA90 598 aa22.55■■□□□ 1.2
CLN3-205ENST00000359984 ADGRA2Q96PE1 1338 aa22.55■■□□□ 1.2
CLN3-205ENST00000359984 Q4G0T1 1027 aa22.54■■□□□ 1.2
CLN3-205ENST00000359984 PRR16Q569H4 304 aa22.54■■□□□ 1.2
CLN3-205ENST00000359984 SPECC1Q5M775 1068 aa22.54■■□□□ 1.2
CLN3-205ENST00000359984 ARHGEF16Q5VV41 709 aa22.54■■□□□ 1.2
CLN3-205ENST00000359984 RESP18Q5W5W9 173 aa22.54■■□□□ 1.2
CLN3-205ENST00000359984 DTHD1Q6ZMT9 781 aa22.54■■□□□ 1.2
CLN3-205ENST00000359984 LENG9Q96B70 501 aa22.54■■□□□ 1.2
CLN3-205ENST00000359984 CAPNS2Q96L46 248 aa22.54■■□□□ 1.2
CLN3-205ENST00000359984 PDCD2LQ9BRP1 358 aa22.54■■□□□ 1.2
CLN3-205ENST00000359984 PGM5Q15124 567 aa22.54■■□□□ 1.2
CLN3-205ENST00000359984 ZFP91Q96JP5 570 aaPredicted RBP22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms