RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 FNBP4Q8N3X1 1017 aaPredicted RBP11.24□□□□□ -0.61
PTPRA-203ENST00000356147 OTUD6BQ8N6M0 293 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 PNMA1Q8ND90 353 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 NDST4Q9H3R1 872 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 PPANQ9NQ55 473 aaKnown RBP11.24□□□□□ -0.61
PTPRA-203ENST00000356147 GOLGA8KD6RF30 607 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 OPA1O60313 960 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 SSBP05455 408 aaKnown RBP eCLIP11.24□□□□□ -0.61
PTPRA-203ENST00000356147 EPHB4P54760 987 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 MECOMQ03112 1051 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 MAATS1Q7Z4T9 603 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 ACSBG1Q96GR2 724 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 NUP58Q9BVL2 599 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 CD248Q9HCU0 757 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 TBC1D7Q9P0N9 293 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 PLAGL2Q9UPG8 496 aa11.24□□□□□ -0.61
PTPRA-203ENST00000356147 UBR2Q8IWV8 1755 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 CPP00450 1065 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 KCNQ4P56696 695 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 EHHADHQ08426 723 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 KCNB1Q14721 858 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 KLHDC7AQ5VTJ3 777 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 DDX42Q86XP3 938 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTPRA-203ENST00000356147 DHTKD1Q96HY7 919 aaPredicted RBP11.23□□□□□ -0.61
PTPRA-203ENST00000356147 ALS2CR12Q96Q35 445 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 JPH2Q9BR39 696 aaPredicted RBP11.23□□□□□ -0.61
PTPRA-203ENST00000356147 MTA3Q9BTC8 594 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTPRA-203ENST00000356147 PACSIN1Q9BY11 444 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 IL17RBQ9NRM6 502 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 BCCIPQ9P287 314 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTPRA-203ENST00000356147 TIAM2Q8IVF5 1701 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 COL4A1P02462 1669 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 ADAMTSL3P82987 1691 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 LSP1P33241 339 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 HDLBPQ00341 1268 aaKnown RBP11.23□□□□□ -0.61
PTPRA-203ENST00000356147 IFT88Q13099 833 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 HLTFQ14527 1009 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTPRA-203ENST00000356147 VWA3BQ502W6 1294 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 PYM1Q9BRP8 204 aaKnown RBP11.23□□□□□ -0.61
PTPRA-203ENST00000356147 TCP11L1Q9NUJ3 509 aa11.23□□□□□ -0.61
PTPRA-203ENST00000356147 GOLGB1Q14789 3259 aaKnown RBP11.23□□□□□ -0.61
PTPRA-203ENST00000356147 PALMO75781 387 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 KIAA0754O94854 1291 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 CALML3P27482 149 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 SIK3Q9Y2K2 1263 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.22□□□□□ -0.61
PTPRA-203ENST00000356147 COL5A2P05997 1499 aaPredicted RBP11.22□□□□□ -0.61
PTPRA-203ENST00000356147 FLT1P17948 1338 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 CACNB1Q02641 598 aaPredicted RBP11.22□□□□□ -0.61
PTPRA-203ENST00000356147 CASKIN2Q8WXE0 1202 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 FAM84BQ96KN1 310 aaPredicted RBP11.22□□□□□ -0.61
PTPRA-203ENST00000356147 TMEM260Q9NX78 707 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 BIN2Q9UBW5 565 aaPredicted RBP11.22□□□□□ -0.61
PTPRA-203ENST00000356147 SRCAPQ6ZRS2 3230 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 TCP1P17987 556 aaKnown RBP11.22□□□□□ -0.61
PTPRA-203ENST00000356147 KIF5BP33176 963 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 CEP85LQ5SZL2 805 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 NAA35Q5VZE5 725 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 BRINP3Q76B58 766 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 POTEDQ86YR6 584 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 NCAPGQ9BPX3 1015 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 NUDT12Q9BQG2 462 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 BRIP1Q9BX63 1249 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 TSGA10Q9BZW7 698 aa11.22□□□□□ -0.61
PTPRA-203ENST00000356147 SAP30BPQ9UHR5 308 aaKnown RBP11.22□□□□□ -0.61
PTPRA-203ENST00000356147 DISP2A7MBM2 1401 aa11.21□□□□□ -0.61
PTPRA-203ENST00000356147 DUOX1Q9NRD9 1551 aa11.21□□□□□ -0.61
PTPRA-203ENST00000356147 BICDL2A1A5D9 508 aa11.21□□□□□ -0.61
PTPRA-203ENST00000356147 POTEMA6NI47 508 aa11.21□□□□□ -0.61
PTPRA-203ENST00000356147 MYMKA6NI61 221 aa11.21□□□□□ -0.61
PTPRA-203ENST00000356147 E7EVH7 732 aa11.21□□□□□ -0.61
PTPRA-203ENST00000356147 NAPAP54920 295 aa11.21□□□□□ -0.61
PTPRA-203ENST00000356147 CAVIN4Q5BKX8 364 aa11.21□□□□□ -0.61
PTPRA-203ENST00000356147 PAXIP1Q6ZW49 1069 aaPredicted RBP11.21□□□□□ -0.61
PTPRA-203ENST00000356147 CELF1Q92879 486 aaKnown RBP11.21□□□□□ -0.61
PTPRA-203ENST00000356147 NSUN4Q96CB9 384 aaKnown RBP11.21□□□□□ -0.61
PTPRA-203ENST00000356147 ERGIC2Q96RQ1 377 aa11.21□□□□□ -0.61
PTPRA-203ENST00000356147 CICQ96RK0 1608 aaPredicted RBP11.21□□□□□ -0.61
PTPRA-203ENST00000356147 NR1D1P20393 614 aa11.21□□□□□ -0.62
PTPRA-203ENST00000356147 KLRC1P26715 233 aa11.21□□□□□ -0.62
PTPRA-203ENST00000356147 TMOD1P28289 359 aa11.21□□□□□ -0.62
PTPRA-203ENST00000356147 ACTN3Q08043 901 aaPredicted RBP11.21□□□□□ -0.62
PTPRA-203ENST00000356147 CHADLQ6NUI6 762 aa11.21□□□□□ -0.62
PTPRA-203ENST00000356147 EMBQ6PCB8 327 aa11.21□□□□□ -0.62
PTPRA-203ENST00000356147 CADPS2Q86UW7 1296 aa11.21□□□□□ -0.62
PTPRA-203ENST00000356147 RETREG2Q8NC44 543 aa11.21□□□□□ -0.62
PTPRA-203ENST00000356147 CCDC47Q96A33 483 aaKnown RBP11.21□□□□□ -0.62
PTPRA-203ENST00000356147 MYCBPQ99417 103 aaPredicted RBP11.21□□□□□ -0.62
PTPRA-203ENST00000356147 CCSER1Q9C0I3 900 aa11.21□□□□□ -0.62
PTPRA-203ENST00000356147 MKNK2Q9HBH9 465 aa11.21□□□□□ -0.62
PTPRA-203ENST00000356147 BTG4Q9NY30 223 aa11.21□□□□□ -0.62
PTPRA-203ENST00000356147 PARP4Q9UKK3 1724 aaKnown RBP11.21□□□□□ -0.62
PTPRA-203ENST00000356147 MYH3P11055 1940 aa11.2□□□□□ -0.62
PTPRA-203ENST00000356147 OR52Z1P0C646 297 aa11.2□□□□□ -0.62
PTPRA-203ENST00000356147 SPRED3Q2MJR0 410 aa11.2□□□□□ -0.62
PTPRA-203ENST00000356147 FAM114A1Q8IWE2 563 aa11.2□□□□□ -0.62
PTPRA-203ENST00000356147 SUGP1Q8IWZ8 645 aaKnown RBP11.2□□□□□ -0.62
PTPRA-203ENST00000356147 NELFCDQ8IXH7 590 aa11.2□□□□□ -0.62
PTPRA-203ENST00000356147 ZNF473Q8WTR7 871 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms