RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ARHGEF16Q5VV41 709 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 NUDT12Q9BQG2 462 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 FLRT1Q9NZU1 646 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 TRIM17Q9Y577 477 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 PFASO15067 1338 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 PIK3CDO00329 1044 aa20.77■□□□□ 0.92
HMGA1-201ENST00000311487 MYCLP12524 364 aaPredicted RBP20.77■□□□□ 0.92
HMGA1-201ENST00000311487 INF2Q27J81 1249 aa20.77■□□□□ 0.92
HMGA1-201ENST00000311487 FGD4Q96M96 766 aa20.77■□□□□ 0.92
HMGA1-201ENST00000311487 BRMS1Q9HCU9 246 aa20.77■□□□□ 0.92
HMGA1-201ENST00000311487 DNAJC25-GNG10A0A024R161 153 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 SLC15A5A6NIM6 579 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 MAP2K5Q13163 448 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 FAM133AQ8N9E0 248 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 RGS22Q8NE09 1264 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 BICD2Q8TD16 824 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 ERO1AQ96HE7 468 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 ANO3Q9BYT9 981 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 RTEL1Q9NZ71 1219 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 CIZ1Q9ULV3 898 aaPredicted RBP20.76■□□□□ 0.91
HMGA1-201ENST00000311487 ZDHHC9Q9Y397 364 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 LCTP09848 1927 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 ZNF792Q3KQV3 632 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 DAGLBQ8NCG7 672 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 TBCKQ8TEA7 893 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 TNFRSF25Q93038 417 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 PXMP2Q9NR77 195 aa20.76■□□□□ 0.91
HMGA1-201ENST00000311487 CCDC194A0A1B0GVG4 234 aa20.75■□□□□ 0.91
HMGA1-201ENST00000311487 WNT7AO00755 349 aa20.75■□□□□ 0.91
HMGA1-201ENST00000311487 ELNP15502 786 aa20.75■□□□□ 0.91
HMGA1-201ENST00000311487 PRAMEF19Q5SWL8 479 aa20.74■□□□□ 0.91
HMGA1-201ENST00000311487 CYP2W1Q8TAV3 490 aa20.74■□□□□ 0.91
HMGA1-201ENST00000311487 ALDH5A1P51649 535 aaPredicted RBP20.74■□□□□ 0.91
HMGA1-201ENST00000311487 PGM5Q15124 567 aa20.74■□□□□ 0.91
HMGA1-201ENST00000311487 GALNT17Q6IS24 598 aa20.74■□□□□ 0.91
HMGA1-201ENST00000311487 OTOP1Q7RTM1 612 aa20.74■□□□□ 0.91
HMGA1-201ENST00000311487 NOSTRINQ8IVI9 506 aa20.74■□□□□ 0.91
HMGA1-201ENST00000311487 ABRAQ8N0Z2 381 aa20.74■□□□□ 0.91
HMGA1-201ENST00000311487 USP6NLQ92738 828 aa20.74■□□□□ 0.91
HMGA1-201ENST00000311487 MAML3Q96JK9 1138 aa20.74■□□□□ 0.91
HMGA1-201ENST00000311487 SRRDQ9UH36 339 aa20.74■□□□□ 0.91
HMGA1-201ENST00000311487 RBBP6Q7Z6E9 1792 aaKnown RBP20.73■□□□□ 0.91
HMGA1-201ENST00000311487 EDIL3O43854 480 aa20.73■□□□□ 0.91
HMGA1-201ENST00000311487 CYP2C19P33261 490 aa20.73■□□□□ 0.91
HMGA1-201ENST00000311487 DEKP35659 375 aaKnown RBP20.73■□□□□ 0.91
HMGA1-201ENST00000311487 RGS2P41220 211 aa20.73■□□□□ 0.91
HMGA1-201ENST00000311487 TRIM32Q13049 653 aa20.73■□□□□ 0.91
HMGA1-201ENST00000311487 NSUN6Q8TEA1 469 aaKnown RBP20.73■□□□□ 0.91
HMGA1-201ENST00000311487 MYCP01106 439 aaPredicted RBP20.72■□□□□ 0.91
HMGA1-201ENST00000311487 ZSCAN22P10073 491 aaPredicted RBP20.72■□□□□ 0.91
HMGA1-201ENST00000311487 U2AF2P26368 475 aaKnown RBP eCLIP20.72■□□□□ 0.91
HMGA1-201ENST00000311487 CTCFP49711 727 aaPredicted RBP20.72■□□□□ 0.91
HMGA1-201ENST00000311487 GHRHRQ02643 423 aa20.72■□□□□ 0.91
HMGA1-201ENST00000311487 PDCD2LQ9BRP1 358 aa20.72■□□□□ 0.91
HMGA1-201ENST00000311487 GLT8D2Q9H1C3 349 aa20.72■□□□□ 0.91
HMGA1-201ENST00000311487 FOXP1Q9H334 677 aaPredicted RBP20.72■□□□□ 0.91
HMGA1-201ENST00000311487 NR3C2P08235 984 aa20.72■□□□□ 0.91
HMGA1-201ENST00000311487 PTGS1P23219 599 aa20.72■□□□□ 0.91
HMGA1-201ENST00000311487 NONOQ15233 471 aaKnown RBP eCLIP20.72■□□□□ 0.916e-7■□□□□ 10
HMGA1-201ENST00000311487 LETM2Q2VYF4 491 aa20.72■□□□□ 0.91
HMGA1-201ENST00000311487 RAET1EQ8TD07 263 aa20.72■□□□□ 0.91
HMGA1-201ENST00000311487 SOCS4Q8WXH5 440 aa20.72■□□□□ 0.91
HMGA1-201ENST00000311487 FTOQ9C0B1 505 aaKnown RBP eCLIP20.72■□□□□ 0.91
HMGA1-201ENST00000311487 MCM3APO60318 1980 aa20.72■□□□□ 0.91
HMGA1-201ENST00000311487 MRPS9P82933 396 aaKnown RBP20.71■□□□□ 0.91
HMGA1-201ENST00000311487 ARHGAP4P98171 946 aa20.71■□□□□ 0.91
HMGA1-201ENST00000311487 CEBPZQ03701 1054 aaKnown RBP20.71■□□□□ 0.91
HMGA1-201ENST00000311487 RESTQ13127 1097 aa20.71■□□□□ 0.91
HMGA1-201ENST00000311487 AP3B2Q13367 1082 aa20.71■□□□□ 0.91
HMGA1-201ENST00000311487 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.71■□□□□ 0.912e-6■■■■□ 19.9
HMGA1-201ENST00000311487 KRT25Q7Z3Z0 450 aa20.71■□□□□ 0.91
HMGA1-201ENST00000311487 TRIB2Q92519 343 aa20.71■□□□□ 0.91
HMGA1-201ENST00000311487 GJA10Q969M2 543 aa20.71■□□□□ 0.91
HMGA1-201ENST00000311487 MAP3K20Q9NYL2 800 aaKnown RBP20.71■□□□□ 0.91
HMGA1-201ENST00000311487 ADD3Q9UEY8 706 aaKnown RBP20.71■□□□□ 0.91
HMGA1-201ENST00000311487 PLXNA1Q9UIW2 1896 aa20.71■□□□□ 0.91
HMGA1-201ENST00000311487 SORBS3O60504 671 aa20.7■□□□□ 0.91
HMGA1-201ENST00000311487 TDP2O95551 362 aa20.7■□□□□ 0.91
HMGA1-201ENST00000311487 ARMCX2Q7L311 632 aa20.7■□□□□ 0.91
HMGA1-201ENST00000311487 FBXO16Q8IX29 292 aaPredicted RBP20.7■□□□□ 0.91
HMGA1-201ENST00000311487 APBA2Q99767 749 aa20.7■□□□□ 0.91
HMGA1-201ENST00000311487 PKD2L1Q9P0L9 805 aa20.7■□□□□ 0.91
HMGA1-201ENST00000311487 PTCH2Q9Y6C5 1203 aa20.7■□□□□ 0.91
HMGA1-201ENST00000311487 F13A1P00488 732 aa20.7■□□□□ 0.9
HMGA1-201ENST00000311487 FOSP01100 380 aaPredicted RBP20.7■□□□□ 0.9
HMGA1-201ENST00000311487 HOXD10P28358 340 aa20.7■□□□□ 0.9
HMGA1-201ENST00000311487 TOB1P50616 345 aaPredicted RBP20.7■□□□□ 0.9
HMGA1-201ENST00000311487 PDE4DQ08499 809 aa20.7■□□□□ 0.9
HMGA1-201ENST00000311487 TMEM63BQ5T3F8 832 aa20.7■□□□□ 0.9
HMGA1-201ENST00000311487 SEPT14Q6ZU15 432 aa20.7■□□□□ 0.9
HMGA1-201ENST00000311487 DNERQ8NFT8 737 aa20.7■□□□□ 0.9
HMGA1-201ENST00000311487 MYH7BA7E2Y1 1941 aa20.7■□□□□ 0.9
HMGA1-201ENST00000311487 RPTORQ8N122 1335 aa20.69■□□□□ 0.9
HMGA1-201ENST00000311487 FAM86B1E9PN63 330 aa20.69■□□□□ 0.9
HMGA1-201ENST00000311487 CCNT1O60563 726 aaKnown RBP20.69■□□□□ 0.9
HMGA1-201ENST00000311487 BRD1O95696 1058 aa20.69■□□□□ 0.9
HMGA1-201ENST00000311487 FAM86B2P0C5J1 330 aa20.69■□□□□ 0.9
HMGA1-201ENST00000311487 ZNF76P36508 570 aa20.69■□□□□ 0.9
HMGA1-201ENST00000311487 SREBF1P36956 1147 aa20.69■□□□□ 0.9
HMGA1-201ENST00000311487 ZNF174Q15697 407 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms