RNA–Protein interactions for RNA: YPR135W

CTF4, Transcript of Chromatin-associated protein, yeastyeast

Gene CTF4, Length 2,784 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTF4YPR135W TY1A-DR5P0CX65 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-ER2P0CX66 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-GR3P0CX67 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-LR1P0CX68 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-MR2P0CX69 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-JR2P47099 440 aa3.7□□□□□ -1.82
CTF4YPR135W FRK1Q03002 865 aaPredicted RBP3.7□□□□□ -1.82
CTF4YPR135W TY1A-DR1Q03856 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-ML1Q04706 440 aaKnown RBP3.7□□□□□ -1.82
CTF4YPR135W LAM6Q08001 693 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-BRQ12217 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-NL2Q12470 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-GR2Q12485 440 aa3.7□□□□□ -1.82
CTF4YPR135W GCR2Q01722 534 aa3.7□□□□□ -1.82
CTF4YPR135W SPT16P32558 1035 aaKnown RBP3.69□□□□□ -1.82
CTF4YPR135W ORC6P38826 435 aa3.69□□□□□ -1.82
CTF4YPR135W SEC2P17065 759 aa3.69□□□□□ -1.82
CTF4YPR135W REF2P42073 533 aaPredicted RBP3.69□□□□□ -1.82
CTF4YPR135W IFH1P39520 1085 aa3.68□□□□□ -1.82
CTF4YPR135W REV3P14284 1504 aa3.68□□□□□ -1.82
CTF4YPR135W RRN7P40992 514 aa3.68□□□□□ -1.82
CTF4YPR135W THO2P53552 1597 aaKnown RBP3.67□□□□□ -1.82
CTF4YPR135W ECM5Q03214 1411 aa3.67□□□□□ -1.82
CTF4YPR135W CDC4P07834 779 aa3.66□□□□□ -1.82
CTF4YPR135W BDP1P46678 594 aa3.66□□□□□ -1.82
CTF4YPR135W MDS3P53094 1487 aa3.65□□□□□ -1.82
CTF4YPR135W HSL1P34244 1518 aa3.65□□□□□ -1.82
CTF4YPR135W MVP1P40959 511 aaKnown RBP3.65□□□□□ -1.83
CTF4YPR135W YPR109WQ06104 294 aa3.64□□□□□ -1.83
CTF4YPR135W YPR148CQ06523 435 aa3.64□□□□□ -1.83
CTF4YPR135W VPS70P47161 811 aa3.63□□□□□ -1.83
CTF4YPR135W SPT6P23615 1451 aaKnown RBP3.63□□□□□ -1.83
CTF4YPR135W MET22P32179 357 aa3.63□□□□□ -1.83
CTF4YPR135W ERF2Q06551 359 aa3.63□□□□□ -1.83
CTF4YPR135W BUD4P47136 1447 aa3.62□□□□□ -1.83
CTF4YPR135W KEX2P13134 814 aa3.62□□□□□ -1.83
CTF4YPR135W RGR1P19263 1082 aa3.62□□□□□ -1.83
CTF4YPR135W PAT1P25644 796 aaKnown RBP3.62□□□□□ -1.83
CTF4YPR135W COX6P00427 148 aa3.61□□□□□ -1.83
CTF4YPR135W HED1Q03937 162 aa3.61□□□□□ -1.83
CTF4YPR135W ENV9Q08651 330 aa3.6□□□□□ -1.83
CTF4YPR135W MAK21Q12176 1025 aaKnown RBP3.6□□□□□ -1.83
CTF4YPR135W PEP1P32319 1579 aa3.6□□□□□ -1.83
CTF4YPR135W PAC1P39946 494 aaKnown RBP3.59□□□□□ -1.83
CTF4YPR135W YDR444WQ04093 687 aa3.59□□□□□ -1.83
CTF4YPR135W ASH1P34233 588 aa3.58□□□□□ -1.84
CTF4YPR135W MET32Q12041 191 aa3.58□□□□□ -1.84
CTF4YPR135W PUS5Q06244 254 aa3.57□□□□□ -1.84
CTF4YPR135W BPT1P14772 1559 aa3.57□□□□□ -1.84
CTF4YPR135W MOD5P07884 428 aa3.56□□□□□ -1.84
CTF4YPR135W HST3P53687 447 aa3.55□□□□□ -1.84
CTF4YPR135W HIR3P47171 1648 aa3.55□□□□□ -1.84
CTF4YPR135W TUB4P53378 473 aa3.55□□□□□ -1.84
CTF4YPR135W LCB5Q06147 687 aaKnown RBP3.55□□□□□ -1.84
CTF4YPR135W AFT1P22149 690 aa3.54□□□□□ -1.84
CTF4YPR135W AGE1Q04412 482 aa3.54□□□□□ -1.84
CTF4YPR135W YDL176WQ12027 708 aa3.54□□□□□ -1.84
CTF4YPR135W RRD1P40454 393 aaKnown RBP3.52□□□□□ -1.85
CTF4YPR135W YJR115WP47152 169 aa3.52□□□□□ -1.85
CTF4YPR135W MYO2P19524 1574 aaKnown RBP3.51□□□□□ -1.85
CTF4YPR135W YCF1P39109 1515 aaKnown RBP3.51□□□□□ -1.85
CTF4YPR135W PSE1P32337 1089 aaKnown RBP3.51□□□□□ -1.85
CTF4YPR135W BNI1P41832 1953 aa3.51□□□□□ -1.85
CTF4YPR135W PBS2P08018 668 aa3.5□□□□□ -1.85
CTF4YPR135W ATG2P53855 1592 aa3.5□□□□□ -1.85
CTF4YPR135W CLB5P30283 435 aa3.49□□□□□ -1.85
CTF4YPR135W RTF1P53064 558 aa3.49□□□□□ -1.85
CTF4YPR135W YNL115CP53925 644 aa3.49□□□□□ -1.85
CTF4YPR135W KXD1P53158 218 aa3.47□□□□□ -1.85
CTF4YPR135W IRC20Q06554 1556 aa3.47□□□□□ -1.85
CTF4YPR135W CAF120P53836 1060 aa3.47□□□□□ -1.85
CTF4YPR135W CKB1P43639 278 aa3.46□□□□□ -1.86
CTF4YPR135W MAM3Q12296 706 aa3.46□□□□□ -1.86
CTF4YPR135W LTE1P07866 1435 aa3.46□□□□□ -1.86
CTF4YPR135W SGS1P35187 1447 aa3.46□□□□□ -1.86
CTF4YPR135W HXT10P43581 546 aa3.46□□□□□ -1.86
CTF4YPR135W CDC25P04821 1589 aa3.45□□□□□ -1.86
CTF4YPR135W SSK2P53599 1579 aa3.45□□□□□ -1.86
CTF4YPR135W PDC1P06169 563 aaKnown RBP3.45□□□□□ -1.86
CTF4YPR135W SIT4P20604 311 aa3.45□□□□□ -1.86
CTF4YPR135W SYH1Q02875 849 aaKnown RBP3.45□□□□□ -1.86
CTF4YPR135W DNF1P32660 1571 aa3.45□□□□□ -1.86
CTF4YPR135W UGA3P26370 528 aa3.45□□□□□ -1.86
CTF4YPR135W IES2P40154 320 aa3.45□□□□□ -1.86
CTF4YPR135W MSB3P48566 633 aaPredicted RBP3.45□□□□□ -1.86
CTF4YPR135W NIS1P53939 407 aa3.45□□□□□ -1.86
CTF4YPR135W RPA190P10964 1664 aaKnown RBP3.44□□□□□ -1.86
CTF4YPR135W TEA1P47988 759 aa3.44□□□□□ -1.86
CTF4YPR135W PTK2P47116 818 aaKnown RBP3.44□□□□□ -1.86
CTF4YPR135W MET5P47169 1442 aa3.43□□□□□ -1.86
CTF4YPR135W TPD3P31383 635 aa3.43□□□□□ -1.86
CTF4YPR135W OPT2Q06593 877 aa3.43□□□□□ -1.86
CTF4YPR135W SRF1Q12516 437 aa3.43□□□□□ -1.86
CTF4YPR135W SLY41P22215 453 aa3.42□□□□□ -1.86
CTF4YPR135W ACO2P39533 789 aa3.42□□□□□ -1.86
CTF4YPR135W KIP2P28743 706 aa3.42□□□□□ -1.86
CTF4YPR135W ESC1Q03661 1658 aaKnown RBP3.41□□□□□ -1.86
CTF4YPR135W YMR196WQ04336 1088 aa3.41□□□□□ -1.86
CTF4YPR135W YDL206WQ12424 762 aa3.41□□□□□ -1.86
CTF4YPR135W TAF2P23255 1407 aa3.41□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 37.2 ms