RNA–Protein interactions for RNA: YOR138C

RUP1, Transcript of Protein that regulates ubiquitination of Rsp5p, yeastyeast

Gene RUP1, Length 2,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUP1YOR138C SUI2P20459 304 aaKnown RBP9.38□□□□□ -0.91
RUP1YOR138C IPL1P38991 367 aa9.38□□□□□ -0.91
RUP1YOR138C ALD4P46367 519 aaKnown RBP9.37□□□□□ -0.91
RUP1YOR138C MPP10P47083 593 aaKnown RBP9.37□□□□□ -0.91
RUP1YOR138C YEF3P16521 1044 aaKnown RBP9.36□□□□□ -0.91
RUP1YOR138C CAB1Q04430 367 aa9.36□□□□□ -0.91
RUP1YOR138C NAP1P25293 417 aaKnown RBP9.34□□□□□ -0.91
RUP1YOR138C IME2P32581 645 aa9.34□□□□□ -0.91
RUP1YOR138C BCK1Q01389 1478 aa9.33□□□□□ -0.92
RUP1YOR138C URN1Q06525 465 aaKnown RBP9.32□□□□□ -0.92
RUP1YOR138C YPR148CQ06523 435 aa9.32□□□□□ -0.92
RUP1YOR138C SNF2P22082 1703 aa9.32□□□□□ -0.92
RUP1YOR138C YRB30P53107 440 aaPredicted RBP9.31□□□□□ -0.92
RUP1YOR138C OPY1P38271 328 aa9.31□□□□□ -0.92
RUP1YOR138C RTR1P40084 226 aaPredicted RBP9.31□□□□□ -0.92
RUP1YOR138C EAF7P53911 425 aaKnown RBP9.3□□□□□ -0.92
RUP1YOR138C IOC4Q04213 475 aa9.28□□□□□ -0.92
RUP1YOR138C CLC1P17891 233 aa9.27□□□□□ -0.92
RUP1YOR138C SAP155P43612 1002 aa9.27□□□□□ -0.92
RUP1YOR138C RAD2P07276 1031 aa9.27□□□□□ -0.93
RUP1YOR138C KAR2P16474 682 aaKnown RBP9.27□□□□□ -0.93
RUP1YOR138C YML133CQ03099 1374 aa9.27□□□□□ -0.93
RUP1YOR138C YLL067CQ07888 1374 aa9.27□□□□□ -0.93
RUP1YOR138C YLL066CQ99208 1374 aa9.27□□□□□ -0.93
RUP1YOR138C RRP46P53256 223 aaPredicted RBP9.26□□□□□ -0.93
RUP1YOR138C NAB6Q03735 1134 aaKnown RBP RIP-Chip data9.26□□□□□ -0.93not detected
RUP1YOR138C DAL5P15365 543 aa9.26□□□□□ -0.93
RUP1YOR138C YFR006WP43590 535 aa9.26□□□□□ -0.93
RUP1YOR138C PAP2P53632 584 aaKnown RBP9.26□□□□□ -0.93
RUP1YOR138C TPD3P31383 635 aa9.25□□□□□ -0.93
RUP1YOR138C RCM1P53972 490 aa9.24□□□□□ -0.93
RUP1YOR138C ITT1Q04638 464 aa9.24□□□□□ -0.93
RUP1YOR138C MRX12P47084 519 aa9.23□□□□□ -0.93
RUP1YOR138C KRE5P22023 1365 aa9.21□□□□□ -0.93
RUP1YOR138C CSE4P36012 229 aa9.21□□□□□ -0.94
RUP1YOR138C THI22Q06490 572 aa9.21□□□□□ -0.94
RUP1YOR138C PRD1P25375 712 aa9.2□□□□□ -0.94
RUP1YOR138C HIM1Q06674 414 aa9.2□□□□□ -0.94
RUP1YOR138C ABP1P15891 592 aaKnown RBP9.19□□□□□ -0.94
RUP1YOR138C BNI1P41832 1953 aa9.19□□□□□ -0.94
RUP1YOR138C PPH3P32345 308 aa9.19□□□□□ -0.94
RUP1YOR138C YIL092WP40497 633 aa9.19□□□□□ -0.94
RUP1YOR138C RIA1P53893 1110 aa9.18□□□□□ -0.94
RUP1YOR138C PDI1P17967 522 aaKnown RBP9.17□□□□□ -0.94
RUP1YOR138C YIR014WP40570 242 aa9.17□□□□□ -0.94
RUP1YOR138C BUD27P43573 796 aaKnown RBP RIP-Chip data9.17□□□□□ -0.94not detected
RUP1YOR138C POL32P47110 350 aa9.17□□□□□ -0.94
RUP1YOR138C CAB3P36076 571 aa9.16□□□□□ -0.94
RUP1YOR138C HEF3P53978 1044 aaKnown RBP9.15□□□□□ -0.94
RUP1YOR138C RTT109Q07794 436 aa9.15□□□□□ -0.94
RUP1YOR138C HAP1P0CE41 1502 aa9.15□□□□□ -0.94
RUP1YOR138C PSK1P31374 1356 aa9.15□□□□□ -0.94
RUP1YOR138C SNF7P39929 240 aaKnown RBP9.14□□□□□ -0.95
RUP1YOR138C TAP42Q04372 366 aa9.14□□□□□ -0.95
RUP1YOR138C PUF6Q04373 656 aaKnown RBP9.14□□□□□ -0.95
RUP1YOR138C LEU2P04173 364 aaPredicted RBP9.14□□□□□ -0.95
RUP1YOR138C DJP1P40564 432 aa9.14□□□□□ -0.95
RUP1YOR138C RTF1P53064 558 aa9.14□□□□□ -0.95
RUP1YOR138C PCT1P13259 424 aa9.13□□□□□ -0.95
RUP1YOR138C MAK21Q12176 1025 aaKnown RBP9.12□□□□□ -0.95
RUP1YOR138C DNF3Q12674 1656 aa9.12□□□□□ -0.95
RUP1YOR138C AUS1Q08409 1394 aa9.11□□□□□ -0.95
RUP1YOR138C GRX4P32642 244 aa9.1□□□□□ -0.95
RUP1YOR138C GAS4Q08271 471 aa9.1□□□□□ -0.95
RUP1YOR138C ROX1P25042 368 aa9.09□□□□□ -0.95
RUP1YOR138C MTR4P47047 1073 aaKnown RBP9.08□□□□□ -0.96
RUP1YOR138C SIR4P11978 1358 aa9.08□□□□□ -0.96
RUP1YOR138C CPS1P27614 576 aa9.07□□□□□ -0.96
RUP1YOR138C BUB1P41695 1021 aaKnown RBP RIP-Chip data9.07□□□□□ -0.96not detected
RUP1YOR138C RLF2Q12495 606 aa9.07□□□□□ -0.96
RUP1YOR138C USO1P25386 1790 aa9.06□□□□□ -0.96
RUP1YOR138C TRP5P00931 707 aaKnown RBP9.06□□□□□ -0.96
RUP1YOR138C RPS24AP0CX31 135 aaKnown RBP9.06□□□□□ -0.96
RUP1YOR138C RPS24BP0CX32 135 aaKnown RBP9.06□□□□□ -0.96
RUP1YOR138C EBP2P36049 427 aaKnown RBP9.06□□□□□ -0.96
RUP1YOR138C VPS24P36095 224 aaKnown RBP9.05□□□□□ -0.96
RUP1YOR138C DPS1P04802 557 aaKnown RBP9.05□□□□□ -0.96
RUP1YOR138C RPO41P13433 1351 aaKnown RBP9.03□□□□□ -0.96
RUP1YOR138C YBR287WP38355 427 aa9.02□□□□□ -0.97
RUP1YOR138C SLN1P39928 1220 aaPredicted RBP9.02□□□□□ -0.97
RUP1YOR138C RRT14P40470 206 aa9.02□□□□□ -0.97
RUP1YOR138C AKL1P38080 1108 aaKnown RBP9.02□□□□□ -0.97
RUP1YOR138C YNR029CP53729 429 aaKnown RBP9.02□□□□□ -0.97
RUP1YOR138C DSD1P53095 428 aa9.01□□□□□ -0.97
RUP1YOR138C GYP7P48365 746 aa9□□□□□ -0.97
RUP1YOR138C MSP1P28737 362 aa9□□□□□ -0.97
RUP1YOR138C ILV3P39522 585 aaKnown RBP9□□□□□ -0.97
RUP1YOR138C YRF1-4O13559 1382 aa9□□□□□ -0.97
RUP1YOR138C TY1B-NL2Q99337 1749 aaKnown RBP8.99□□□□□ -0.97
RUP1YOR138C ZDS1P50111 915 aaKnown RBP8.98□□□□□ -0.97
RUP1YOR138C ITC1P53125 1264 aa8.98□□□□□ -0.97
RUP1YOR138C MNN4P36044 1178 aa8.97□□□□□ -0.97
RUP1YOR138C ARL1P38116 183 aaKnown RBP8.97□□□□□ -0.97
RUP1YOR138C MAK10Q02197 733 aa8.97□□□□□ -0.97
RUP1YOR138C NKP2Q06162 153 aa8.97□□□□□ -0.97
RUP1YOR138C YNG2P38806 282 aaKnown RBP8.97□□□□□ -0.97
RUP1YOR138C SPO1P53541 631 aa8.97□□□□□ -0.97
RUP1YOR138C SRT1Q03175 343 aa8.97□□□□□ -0.97
RUP1YOR138C ECM16Q04217 1267 aaKnown RBP8.97□□□□□ -0.97
RUP1YOR138C YNL050CP53952 270 aa8.96□□□□□ -0.98
Retrieved 100 of 5,963 RNA–protein pairs in 9.9 ms