RNA–Protein interactions for RNA: YOR018W

ROD1, Transcript of Alpha-arrestin involved in ubiquitin-dependent endocytosis, yeastyeast

Gene ROD1, Length 2,514 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROD1YOR018W NUP192P47054 1683 aa5.32□□□□□ -1.56
ROD1YOR018W KRE5P22023 1365 aa5.31□□□□□ -1.56
ROD1YOR018W PAF1P38351 445 aa5.31□□□□□ -1.56
ROD1YOR018W CAB1Q04430 367 aa5.31□□□□□ -1.56
ROD1YOR018W BCH2P36122 765 aa5.31□□□□□ -1.56
ROD1YOR018W MAK10Q02197 733 aa5.31□□□□□ -1.56
ROD1YOR018W RTC1Q08281 1341 aa5.31□□□□□ -1.56
ROD1YOR018W AI2P03876 854 aa5.29□□□□□ -1.56
ROD1YOR018W LEO1P38439 464 aa5.29□□□□□ -1.56
ROD1YOR018W URN1Q06525 465 aaKnown RBP5.29□□□□□ -1.56
ROD1YOR018W MIF2P35201 549 aa5.28□□□□□ -1.56
ROD1YOR018W KIP3P53086 805 aaKnown RBP5.27□□□□□ -1.57
ROD1YOR018W TAF8Q03750 510 aa5.26□□□□□ -1.57
ROD1YOR018W RIA1P53893 1110 aa5.26□□□□□ -1.57
ROD1YOR018W ALD4P46367 519 aaKnown RBP5.25□□□□□ -1.57
ROD1YOR018W USO1P25386 1790 aa5.24□□□□□ -1.57
ROD1YOR018W LEU3P08638 886 aa5.23□□□□□ -1.57
ROD1YOR018W POL5P39985 1022 aaKnown RBP5.23□□□□□ -1.57
ROD1YOR018W NST1P53935 1240 aa5.23□□□□□ -1.57
ROD1YOR018W BCK1Q01389 1478 aa5.23□□□□□ -1.57
ROD1YOR018W RAM2P29703 316 aa5.23□□□□□ -1.57
ROD1YOR018W ESL2P36168 1195 aa5.22□□□□□ -1.57
ROD1YOR018W SPE2P21182 396 aa5.22□□□□□ -1.57
ROD1YOR018W THI12P42883 340 aa5.22□□□□□ -1.57
ROD1YOR018W THI5P43534 340 aa5.22□□□□□ -1.57
ROD1YOR018W YFR006WP43590 535 aa5.22□□□□□ -1.57
ROD1YOR018W THI11P47183 340 aa5.22□□□□□ -1.57
ROD1YOR018W RCM1P53972 490 aa5.22□□□□□ -1.57
ROD1YOR018W THI13Q07748 340 aa5.22□□□□□ -1.57
ROD1YOR018W PPH3P32345 308 aa5.21□□□□□ -1.58
ROD1YOR018W RCR1P38212 213 aa5.21□□□□□ -1.58
ROD1YOR018W MRX12P47084 519 aa5.21□□□□□ -1.58
ROD1YOR018W YLR419WQ06698 1435 aaKnown RBP5.21□□□□□ -1.58
ROD1YOR018W TY3B-IQ7LHG5 1498 aaKnown RBP5.2□□□□□ -1.58
ROD1YOR018W EPS1P40557 701 aa5.2□□□□□ -1.58
ROD1YOR018W CFT1Q06632 1357 aaKnown RBP5.19□□□□□ -1.58
ROD1YOR018W YNR029CP53729 429 aaKnown RBP5.19□□□□□ -1.58
ROD1YOR018W BDF1P35817 686 aa5.18□□□□□ -1.58
ROD1YOR018W CHZ1P40019 153 aaPredicted RBP5.18□□□□□ -1.58
ROD1YOR018W SPT7P35177 1332 aa5.18□□□□□ -1.58
ROD1YOR018W HAP1P0CE41 1502 aa5.17□□□□□ -1.58
ROD1YOR018W RTG3P38165 486 aa5.16□□□□□ -1.58
ROD1YOR018W YML133CQ03099 1374 aa5.16□□□□□ -1.58
ROD1YOR018W YLL067CQ07888 1374 aa5.16□□□□□ -1.58
ROD1YOR018W YLL066CQ99208 1374 aa5.16□□□□□ -1.58
ROD1YOR018W CPS1P27614 576 aa5.15□□□□□ -1.59
ROD1YOR018W PDS5Q04264 1277 aa5.15□□□□□ -1.59
ROD1YOR018W BBC1P47068 1157 aa5.14□□□□□ -1.59
ROD1YOR018W MRM1P25270 412 aa5.14□□□□□ -1.59
ROD1YOR018W YPR148CQ06523 435 aa5.14□□□□□ -1.59
ROD1YOR018W MHP1P43638 1398 aa5.12□□□□□ -1.59
ROD1YOR018W NSR1P27476 414 aaKnown RBP RIP-Chip data5.12□□□□□ -1.59not detected
ROD1YOR018W SET1P38827 1080 aaKnown RBP5.11□□□□□ -1.59
ROD1YOR018W TRK1P12685 1235 aa5.11□□□□□ -1.59
ROD1YOR018W YEF3P16521 1044 aaKnown RBP5.11□□□□□ -1.59
ROD1YOR018W YMR196WQ04336 1088 aa5.11□□□□□ -1.59
ROD1YOR018W FKH1P40466 484 aa5.1□□□□□ -1.59
ROD1YOR018W RPS24AP0CX31 135 aaKnown RBP5.09□□□□□ -1.59
ROD1YOR018W RPS24BP0CX32 135 aaKnown RBP5.09□□□□□ -1.59
ROD1YOR018W MAP2P38174 421 aaKnown RBP5.09□□□□□ -1.59
ROD1YOR018W SCY1P53009 804 aa5.09□□□□□ -1.59
ROD1YOR018W TY1B-NL2Q99337 1749 aaKnown RBP5.09□□□□□ -1.6
ROD1YOR018W VPS29P38759 282 aa5.08□□□□□ -1.6
ROD1YOR018W APP1P53933 587 aa5.08□□□□□ -1.6
ROD1YOR018W HIM1Q06674 414 aa5.08□□□□□ -1.6
ROD1YOR018W GAS4Q08271 471 aa5.07□□□□□ -1.6
ROD1YOR018W PSK1P31374 1356 aa5.07□□□□□ -1.6
ROD1YOR018W MAK11P20484 414 aaKnown RBP5.06□□□□□ -1.6
ROD1YOR018W NAP1P25293 417 aaKnown RBP5.06□□□□□ -1.6
ROD1YOR018W BUD31P25337 157 aaPredicted RBP5.06□□□□□ -1.6
ROD1YOR018W LEU2P04173 364 aaPredicted RBP5.06□□□□□ -1.6
ROD1YOR018W PRP45P28004 379 aaPredicted RBP5.05□□□□□ -1.6
ROD1YOR018W CSE4P36012 229 aa5.05□□□□□ -1.6
ROD1YOR018W AUS1Q08409 1394 aa5.05□□□□□ -1.6
ROD1YOR018W MSB3P48566 633 aaPredicted RBP5.05□□□□□ -1.6
ROD1YOR018W RRP46P53256 223 aaPredicted RBP5.04□□□□□ -1.6
ROD1YOR018W UBP10P53874 792 aaPredicted RBP5.04□□□□□ -1.6
ROD1YOR018W ADE6P38972 1358 aaKnown RBP5.04□□□□□ -1.6
ROD1YOR018W MLP1Q02455 1875 aaKnown RBP5.03□□□□□ -1.6
ROD1YOR018W TY4B-HP0C2J7 1802 aa5.03□□□□□ -1.6
ROD1YOR018W TY4B-JP47024 1803 aa5.03□□□□□ -1.6
ROD1YOR018W DPS1P04802 557 aaKnown RBP5.02□□□□□ -1.61
ROD1YOR018W FUN12P39730 1002 aaKnown RBP5.02□□□□□ -1.61
ROD1YOR018W MTR4P47047 1073 aaKnown RBP5.02□□□□□ -1.61
ROD1YOR018W VPS70P47161 811 aa5.02□□□□□ -1.61
ROD1YOR018W YIL177CP40434 1758 aa5.02□□□□□ -1.61
ROD1YOR018W YJL225CP40889 1758 aa5.02□□□□□ -1.61
ROD1YOR018W PRP5P21372 849 aaPredicted RBP5.01□□□□□ -1.61
ROD1YOR018W BUB1P41695 1021 aaKnown RBP RIP-Chip data5.01□□□□□ -1.61not detected
ROD1YOR018W STS1P38637 319 aa5.01□□□□□ -1.61
ROD1YOR018W ENT1Q12518 454 aa5.01□□□□□ -1.61
ROD1YOR018W SEC3P33332 1336 aaKnown RBP5□□□□□ -1.61
ROD1YOR018W PDI1P17967 522 aaKnown RBP4.99□□□□□ -1.61
ROD1YOR018W RPN1P38764 993 aaKnown RBP4.99□□□□□ -1.61
ROD1YOR018W COQ8P27697 501 aa4.99□□□□□ -1.61
ROD1YOR018W DSF2P38213 736 aa4.99□□□□□ -1.61
ROD1YOR018W PRP43P53131 767 aaKnown RBP4.99□□□□□ -1.61
ROD1YOR018W PAP2P53632 584 aaKnown RBP4.99□□□□□ -1.61
ROD1YOR018W YRF1-2P40105 1681 aa4.99□□□□□ -1.61
ROD1YOR018W KAR2P16474 682 aaKnown RBP4.98□□□□□ -1.61
Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms