RNA–Protein interactions for RNA: YJL001W

PRE3, Transcript of Beta 1 subunit of the 20S proteasome, yeastyeast

Gene PRE3, Length 648 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE3YJL001W SRB8P25648 1427 aa9.63□□□□□ -0.87
PRE3YJL001W VMR1P38735 1592 aa9.63□□□□□ -0.87
PRE3YJL001W THI12P42883 340 aa9.62□□□□□ -0.87
PRE3YJL001W THI5P43534 340 aa9.62□□□□□ -0.87
PRE3YJL001W THI11P47183 340 aa9.62□□□□□ -0.87
PRE3YJL001W THI13Q07748 340 aa9.62□□□□□ -0.87
PRE3YJL001W IPL1P38991 367 aa9.61□□□□□ -0.87
PRE3YJL001W UBP9P39967 754 aa9.61□□□□□ -0.87
PRE3YJL001W YMR196WQ04336 1088 aa9.61□□□□□ -0.87
PRE3YJL001W AI2P03876 854 aa9.58□□□□□ -0.88
PRE3YJL001W CST9Q06032 482 aa9.58□□□□□ -0.88
PRE3YJL001W BBC1P47068 1157 aa9.56□□□□□ -0.88
PRE3YJL001W TYS1P36421 394 aaKnown RBP9.55□□□□□ -0.88
PRE3YJL001W PSD2P53037 1138 aaKnown RBP9.54□□□□□ -0.88
PRE3YJL001W PDR5P33302 1511 aaKnown RBP9.49□□□□□ -0.89
PRE3YJL001W BUD21Q08492 214 aaPredicted RBP9.47□□□□□ -0.89
PRE3YJL001W MST1P07236 462 aa9.45□□□□□ -0.9
PRE3YJL001W NSR1P27476 414 aaKnown RBP RIP-Chip data9.45□□□□□ -0.9 RIP-Chip
PRE3YJL001W GLN1P32288 370 aaKnown RBP9.45□□□□□ -0.9
PRE3YJL001W YOR238WQ08634 303 aa9.41□□□□□ -0.9
PRE3YJL001W SIS1P25294 352 aaKnown RBP9.39□□□□□ -0.91
PRE3YJL001W LEO1P38439 464 aa9.37□□□□□ -0.91
PRE3YJL001W APP1P53933 587 aa9.37□□□□□ -0.91
PRE3YJL001W CFT1Q06632 1357 aaKnown RBP9.36□□□□□ -0.91
PRE3YJL001W PDR11P40550 1411 aa9.34□□□□□ -0.91
PRE3YJL001W YAP5P40574 245 aa9.34□□□□□ -0.91
PRE3YJL001W BCK1Q01389 1478 aa9.34□□□□□ -0.91
PRE3YJL001W KRE5P22023 1365 aa9.33□□□□□ -0.92
PRE3YJL001W MRM1P25270 412 aa9.31□□□□□ -0.92
PRE3YJL001W GCN2P15442 1659 aa9.31□□□□□ -0.92
PRE3YJL001W RAM2P29703 316 aa9.28□□□□□ -0.92
PRE3YJL001W NUP192P47054 1683 aa9.26□□□□□ -0.93
PRE3YJL001W LEU3P08638 886 aa9.26□□□□□ -0.93
PRE3YJL001W RIA1P53893 1110 aa9.26□□□□□ -0.93
PRE3YJL001W YNR029CP53729 429 aaKnown RBP9.25□□□□□ -0.93
PRE3YJL001W YBL029C-AQ3E756 94 aa9.25□□□□□ -0.93
PRE3YJL001W RTG3P38165 486 aa9.22□□□□□ -0.93
PRE3YJL001W YMR074CQ04773 145 aa9.22□□□□□ -0.93
PRE3YJL001W YRF1-2P40105 1681 aa9.22□□□□□ -0.93
PRE3YJL001W MRX12P47084 519 aa9.21□□□□□ -0.94
PRE3YJL001W RCR1P38212 213 aa9.2□□□□□ -0.94
PRE3YJL001W SET1P38827 1080 aaKnown RBP9.19□□□□□ -0.94
PRE3YJL001W IKI3Q06706 1349 aaKnown RBP9.19□□□□□ -0.94
PRE3YJL001W VNX1P42839 908 aa9.18□□□□□ -0.94
PRE3YJL001W TY3B-IQ7LHG5 1498 aaKnown RBP9.17□□□□□ -0.94
PRE3YJL001W SSM4P40318 1319 aa9.16□□□□□ -0.94
PRE3YJL001W ENT1Q12518 454 aa9.16□□□□□ -0.94
PRE3YJL001W RRP5Q05022 1729 aaKnown RBP9.16□□□□□ -0.94
PRE3YJL001W ENV9Q08651 330 aa9.14□□□□□ -0.95
PRE3YJL001W RAV1P47104 1357 aa9.12□□□□□ -0.95
PRE3YJL001W GTT3P39996 337 aa9.12□□□□□ -0.95
PRE3YJL001W MAK11P20484 414 aaKnown RBP9.11□□□□□ -0.95
PRE3YJL001W RAD9P14737 1309 aa9.1□□□□□ -0.95
PRE3YJL001W SPP1Q03012 353 aa9.1□□□□□ -0.95
PRE3YJL001W CAB1Q04430 367 aa9.1□□□□□ -0.95
PRE3YJL001W IMH1Q06704 911 aaKnown RBP9.1□□□□□ -0.95
PRE3YJL001W WSC3Q12215 556 aa9.1□□□□□ -0.95
PRE3YJL001W VPS70P47161 811 aa9.08□□□□□ -0.96
PRE3YJL001W YPR148CQ06523 435 aa9.08□□□□□ -0.96
PRE3YJL001W VPS29P38759 282 aa9.06□□□□□ -0.96
PRE3YJL001W ALD4P46367 519 aaKnown RBP9.05□□□□□ -0.96
PRE3YJL001W SPB4P25808 606 aaPredicted RBP9.04□□□□□ -0.96
PRE3YJL001W TIF11P38912 153 aaKnown RBP9.04□□□□□ -0.96
PRE3YJL001W TY4B-HP0C2J7 1802 aa9.03□□□□□ -0.96
PRE3YJL001W TY4B-JP47024 1803 aa9.03□□□□□ -0.96
PRE3YJL001W RTC1Q08281 1341 aa9.02□□□□□ -0.97
PRE3YJL001W PIB1Q06651 286 aa9.01□□□□□ -0.97
PRE3YJL001W RPN1P38764 993 aaKnown RBP9□□□□□ -0.97
PRE3YJL001W YMR1P47147 688 aaKnown RBP RIP-Chip data8.99□□□□□ -0.97not detected
PRE3YJL001W URB1P34241 1764 aaKnown RBP8.99□□□□□ -0.97
PRE3YJL001W COQ8P27697 501 aa8.98□□□□□ -0.97
PRE3YJL001W PRP45P28004 379 aaPredicted RBP8.97□□□□□ -0.97
PRE3YJL001W PAF1P38351 445 aa8.97□□□□□ -0.97
PRE3YJL001W MSB4Q12317 492 aa8.95□□□□□ -0.98
PRE3YJL001W FKS3Q04952 1785 aa8.94□□□□□ -0.98
PRE3YJL001W CPS1P27614 576 aa8.94□□□□□ -0.98
PRE3YJL001W DBP1P24784 617 aaKnown RBP8.92□□□□□ -0.98
PRE3YJL001W UBP1P25037 809 aa8.92□□□□□ -0.98
PRE3YJL001W TAF5P38129 798 aa8.92□□□□□ -0.98
PRE3YJL001W YBL086CP38177 466 aa8.91□□□□□ -0.98
PRE3YJL001W STS1P38637 319 aa8.91□□□□□ -0.98
PRE3YJL001W FKH1P40466 484 aa8.91□□□□□ -0.98
PRE3YJL001W ULI1P43604 169 aa8.91□□□□□ -0.98
PRE3YJL001W NOP53Q12080 455 aaKnown RBP8.91□□□□□ -0.98
PRE3YJL001W PSK1P31374 1356 aa8.9□□□□□ -0.98
PRE3YJL001W RPN11P43588 306 aaKnown RBP8.9□□□□□ -0.98
PRE3YJL001W AIR2Q12476 344 aaKnown RBP8.9□□□□□ -0.98
PRE3YJL001W EDE1P34216 1381 aa8.89□□□□□ -0.99
PRE3YJL001W PRP5P21372 849 aaPredicted RBP8.89□□□□□ -0.99
PRE3YJL001W EAP1P36041 632 aaKnown RBP8.89□□□□□ -0.99
PRE3YJL001W RCM1P53972 490 aa8.89□□□□□ -0.99
PRE3YJL001W IOC2Q12072 812 aa8.89□□□□□ -0.99
PRE3YJL001W PBS2P08018 668 aa8.88□□□□□ -0.99
PRE3YJL001W DOT5P40553 215 aa8.88□□□□□ -0.99
PRE3YJL001W ADE6P38972 1358 aaKnown RBP8.87□□□□□ -0.99
PRE3YJL001W MSB3P48566 633 aaPredicted RBP8.87□□□□□ -0.99
PRE3YJL001W LDB19Q12502 818 aa8.87□□□□□ -0.99
PRE3YJL001W SSA1P10591 642 aaKnown RBP8.86□□□□□ -0.99
PRE3YJL001W PPH3P32345 308 aa8.86□□□□□ -0.99
PRE3YJL001W EDS1P38073 919 aa8.86□□□□□ -0.99
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms