RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W TY1A-PR1P0CX58 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-ORP0CX59 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-PR2P0CX60 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-DR5P0CX65 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-ER2P0CX66 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-GR3P0CX67 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-LR1P0CX68 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-MR2P0CX69 440 aa7.37□□□□□ -1.23
RPF1YHR088W SPB4P25808 606 aaPredicted RBP7.37□□□□□ -1.23
RPF1YHR088W TY1A-JR2P47099 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-DR1Q03856 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-ML1Q04706 440 aaKnown RBP7.37□□□□□ -1.23
RPF1YHR088W TY1A-BRQ12217 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-NL2Q12470 440 aa7.37□□□□□ -1.23
RPF1YHR088W TY1A-GR2Q12485 440 aa7.37□□□□□ -1.23
RPF1YHR088W SEC2P17065 759 aa7.36□□□□□ -1.23
RPF1YHR088W IES2P40154 320 aa7.36□□□□□ -1.23
RPF1YHR088W RTF1P53064 558 aa7.35□□□□□ -1.23
RPF1YHR088W RQC2Q12532 1038 aaKnown RBP7.34□□□□□ -1.23
RPF1YHR088W NUP42P49686 430 aaKnown RBP7.33□□□□□ -1.24
RPF1YHR088W RRN7P40992 514 aa7.31□□□□□ -1.24
RPF1YHR088W TEA1P47988 759 aa7.31□□□□□ -1.24
RPF1YHR088W LAM6Q08001 693 aa7.3□□□□□ -1.24
RPF1YHR088W KEX2P13134 814 aa7.29□□□□□ -1.24
RPF1YHR088W CST6P40535 587 aa7.28□□□□□ -1.24
RPF1YHR088W SIT4P20604 311 aa7.27□□□□□ -1.25
RPF1YHR088W YNL115CP53925 644 aa7.27□□□□□ -1.25
RPF1YHR088W DIT2P21595 489 aa7.24□□□□□ -1.25
RPF1YHR088W BDP1P46678 594 aa7.24□□□□□ -1.25
RPF1YHR088W GCR2Q01722 534 aa7.24□□□□□ -1.25
RPF1YHR088W HED1Q03937 162 aa7.24□□□□□ -1.25
RPF1YHR088W ERF2Q06551 359 aa7.24□□□□□ -1.25
RPF1YHR088W CDC4P07834 779 aa7.23□□□□□ -1.25
RPF1YHR088W TUB4P53378 473 aa7.22□□□□□ -1.25
RPF1YHR088W FRK1Q03002 865 aaPredicted RBP7.22□□□□□ -1.25
RPF1YHR088W AGE1Q04412 482 aa7.21□□□□□ -1.26
RPF1YHR088W MOD5P07884 428 aa7.2□□□□□ -1.26
RPF1YHR088W BRE2P43132 505 aa7.2□□□□□ -1.26
RPF1YHR088W NIS1P53939 407 aa7.2□□□□□ -1.26
RPF1YHR088W PAC1P39946 494 aaKnown RBP7.19□□□□□ -1.26
RPF1YHR088W YMR196WQ04336 1088 aa7.18□□□□□ -1.26
RPF1YHR088W TPD3P31383 635 aa7.17□□□□□ -1.26
RPF1YHR088W AIR1P40507 360 aaKnown RBP7.17□□□□□ -1.26
RPF1YHR088W KXD1P53158 218 aa7.17□□□□□ -1.26
RPF1YHR088W YNR021WP53723 404 aaKnown RBP7.17□□□□□ -1.26
RPF1YHR088W ATF2P53296 535 aa7.16□□□□□ -1.26
RPF1YHR088W FPK1P53739 893 aa7.16□□□□□ -1.26
RPF1YHR088W CLA4P48562 842 aa7.15□□□□□ -1.26
RPF1YHR088W HST2P53686 357 aa7.14□□□□□ -1.27
RPF1YHR088W SLY41P22215 453 aa7.12□□□□□ -1.27
RPF1YHR088W BUB1P41695 1021 aaKnown RBP RIP-Chip data7.12□□□□□ -1.27not detected
RPF1YHR088W RGA1P39083 1007 aa7.11□□□□□ -1.27
RPF1YHR088W HXT10P43581 546 aa7.11□□□□□ -1.27
RPF1YHR088W PUS6P53294 404 aa7.11□□□□□ -1.27
RPF1YHR088W AFT1P22149 690 aa7.09□□□□□ -1.27
RPF1YHR088W RRD1P40454 393 aaKnown RBP7.09□□□□□ -1.27
RPF1YHR088W RPA14P50106 137 aa7.09□□□□□ -1.27
RPF1YHR088W TBF1Q02457 562 aa7.09□□□□□ -1.27
RPF1YHR088W ALR1Q08269 859 aa7.09□□□□□ -1.27
RPF1YHR088W AIM7Q12156 149 aa7.09□□□□□ -1.27
RPF1YHR088W HST3P53687 447 aa7.08□□□□□ -1.28
RPF1YHR088W YPR097WQ06839 1073 aa7.08□□□□□ -1.28
RPF1YHR088W GLN1P32288 370 aaKnown RBP7.07□□□□□ -1.28
RPF1YHR088W SYH1Q02875 849 aaKnown RBP7.07□□□□□ -1.28
RPF1YHR088W MMP1Q12372 583 aa7.07□□□□□ -1.28
RPF1YHR088W PDC1P06169 563 aaKnown RBP7.06□□□□□ -1.28
RPF1YHR088W ASH1P34233 588 aa7.06□□□□□ -1.28
RPF1YHR088W PUS5Q06244 254 aa7.05□□□□□ -1.28
RPF1YHR088W MET32Q12041 191 aa7.05□□□□□ -1.28
RPF1YHR088W GLC3P32775 704 aa7.04□□□□□ -1.28
RPF1YHR088W RTT106P40161 455 aa7.04□□□□□ -1.28
RPF1YHR088W ENV9Q08651 330 aa7.03□□□□□ -1.28
RPF1YHR088W YDL206WQ12424 762 aa7.03□□□□□ -1.28
RPF1YHR088W TRM1P15565 570 aaKnown RBP7.02□□□□□ -1.29
RPF1YHR088W YPL062WQ02781 134 aa7.01□□□□□ -1.29
RPF1YHR088W SCJ1P25303 377 aa7□□□□□ -1.29
RPF1YHR088W GBP2P25555 427 aaKnown RBP RIP-Chip data7□□□□□ -1.29not detected
RPF1YHR088W MSB3P48566 633 aaPredicted RBP7□□□□□ -1.29
RPF1YHR088W MET22P32179 357 aa6.99□□□□□ -1.29
RPF1YHR088W GAR1P28007 205 aaKnown RBP6.98□□□□□ -1.29
RPF1YHR088W KIP2P28743 706 aa6.98□□□□□ -1.29
RPF1YHR088W RGA2Q06407 1009 aa6.97□□□□□ -1.29
RPF1YHR088W ESS1P22696 170 aa6.96□□□□□ -1.3
RPF1YHR088W MRT4P33201 236 aaKnown RBP6.96□□□□□ -1.3
RPF1YHR088W IXR1P33417 597 aa6.96□□□□□ -1.3
RPF1YHR088W YDR444WQ04093 687 aa6.96□□□□□ -1.3
RPF1YHR088W LCB5Q06147 687 aaKnown RBP6.95□□□□□ -1.3
RPF1YHR088W LEU3P08638 886 aa6.94□□□□□ -1.3
RPF1YHR088W CSN12P47130 423 aa6.94□□□□□ -1.3
RPF1YHR088W YJR115WP47152 169 aa6.94□□□□□ -1.3
RPF1YHR088W UGA3P26370 528 aa6.93□□□□□ -1.3
RPF1YHR088W RSC30P38781 883 aa6.93□□□□□ -1.3
RPF1YHR088W VAC17P25591 423 aa6.92□□□□□ -1.3
RPF1YHR088W YJU3P28321 313 aa6.91□□□□□ -1.3
RPF1YHR088W PKH3Q03306 898 aaPredicted RBP6.91□□□□□ -1.3
RPF1YHR088W TYW1Q08960 810 aaKnown RBP6.91□□□□□ -1.3
RPF1YHR088W SSA2P10592 639 aaKnown RBP6.9□□□□□ -1.3
RPF1YHR088W YLR346CQ06139 101 aa6.9□□□□□ -1.3
RPF1YHR088W KTR1P27810 393 aaKnown RBP6.89□□□□□ -1.31
RPF1YHR088W SRF1Q12516 437 aa6.89□□□□□ -1.31
Retrieved 100 of 5,963 RNA–protein pairs in 42.7 ms