RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C AIR1P40507 360 aaKnown RBP8.06□□□□□ -1.12
RTR1YER139C SEC2P17065 759 aa8.04□□□□□ -1.12
RTR1YER139C VPS70P47161 811 aa8.04□□□□□ -1.12
RTR1YER139C CLA4P48562 842 aa8.04□□□□□ -1.12
RTR1YER139C GCD11P32481 527 aaKnown RBP8.03□□□□□ -1.12
RTR1YER139C MVP1P40959 511 aaKnown RBP8.02□□□□□ -1.13
RTR1YER139C COX6P00427 148 aa8.01□□□□□ -1.13
RTR1YER139C SPT16P32558 1035 aaKnown RBP8.01□□□□□ -1.13
RTR1YER139C BRE2P43132 505 aa8.01□□□□□ -1.13
RTR1YER139C LAM6Q08001 693 aa8.01□□□□□ -1.13
RTR1YER139C MAK21Q12176 1025 aaKnown RBP8.01□□□□□ -1.13
RTR1YER139C RRN7P40992 514 aa7.97□□□□□ -1.13
RTR1YER139C YPL062WQ02781 134 aa7.97□□□□□ -1.13
RTR1YER139C FRK1Q03002 865 aaPredicted RBP7.97□□□□□ -1.13
RTR1YER139C YPR109WQ06104 294 aa7.96□□□□□ -1.14
RTR1YER139C RGR1P19263 1082 aa7.95□□□□□ -1.14
RTR1YER139C BDP1P46678 594 aa7.93□□□□□ -1.14
RTR1YER139C GCR2Q01722 534 aa7.93□□□□□ -1.14
RTR1YER139C CDC4P07834 779 aa7.9□□□□□ -1.14
RTR1YER139C KEX2P13134 814 aa7.89□□□□□ -1.15
RTR1YER139C PAT1P25644 796 aaKnown RBP7.89□□□□□ -1.15
RTR1YER139C ERF2Q06551 359 aa7.89□□□□□ -1.15
RTR1YER139C GAR1P28007 205 aaKnown RBP7.88□□□□□ -1.15
RTR1YER139C GBP2P25555 427 aaKnown RBP RIP-Chip data7.83□□□□□ -1.16not detected
RTR1YER139C HED1Q03937 162 aa7.83□□□□□ -1.16
RTR1YER139C PAC1P39946 494 aaKnown RBP7.82□□□□□ -1.16
RTR1YER139C PBS2P08018 668 aa7.8□□□□□ -1.16
RTR1YER139C PSE1P32337 1089 aaKnown RBP7.79□□□□□ -1.16
RTR1YER139C MET22P32179 357 aa7.78□□□□□ -1.16
RTR1YER139C AGE1Q04412 482 aa7.78□□□□□ -1.16
RTR1YER139C MOD5P07884 428 aa7.77□□□□□ -1.17
RTR1YER139C CKB1P43639 278 aa7.77□□□□□ -1.17
RTR1YER139C TUB4P53378 473 aa7.76□□□□□ -1.17
RTR1YER139C ENV9Q08651 330 aa7.76□□□□□ -1.17
RTR1YER139C MET32Q12041 191 aa7.75□□□□□ -1.17
RTR1YER139C CLB5P30283 435 aa7.74□□□□□ -1.17
RTR1YER139C PUS5Q06244 254 aa7.73□□□□□ -1.17
RTR1YER139C MAM3Q12296 706 aa7.72□□□□□ -1.17
RTR1YER139C ASH1P34233 588 aa7.71□□□□□ -1.18
RTR1YER139C YDR444WQ04093 687 aa7.71□□□□□ -1.18
RTR1YER139C AFT1P22149 690 aa7.7□□□□□ -1.18
RTR1YER139C RTF1P53064 558 aa7.7□□□□□ -1.18
RTR1YER139C HST3P53687 447 aa7.68□□□□□ -1.18
RTR1YER139C IES2P40154 320 aa7.67□□□□□ -1.18
RTR1YER139C YNL115CP53925 644 aa7.67□□□□□ -1.18
RTR1YER139C LCB5Q06147 687 aaKnown RBP7.65□□□□□ -1.18
RTR1YER139C SIT4P20604 311 aa7.64□□□□□ -1.19
RTR1YER139C DSF2P38213 736 aa7.64□□□□□ -1.19
RTR1YER139C TEA1P47988 759 aa7.62□□□□□ -1.19
RTR1YER139C NIS1P53939 407 aa7.62□□□□□ -1.19
RTR1YER139C YDL176WQ12027 708 aa7.62□□□□□ -1.19
RTR1YER139C RRD1P40454 393 aaKnown RBP7.6□□□□□ -1.19
RTR1YER139C YJR115WP47152 169 aa7.6□□□□□ -1.19
RTR1YER139C NUP42P49686 430 aaKnown RBP7.6□□□□□ -1.19
RTR1YER139C KXD1P53158 218 aa7.6□□□□□ -1.19
RTR1YER139C TPD3P31383 635 aa7.58□□□□□ -1.2
RTR1YER139C HXT10P43581 546 aa7.57□□□□□ -1.2
RTR1YER139C PDC1P06169 563 aaKnown RBP7.56□□□□□ -1.2
RTR1YER139C SYH1Q02875 849 aaKnown RBP7.55□□□□□ -1.2
RTR1YER139C SAS10Q12136 610 aaPredicted RBP7.55□□□□□ -1.2
RTR1YER139C MSB3P48566 633 aaPredicted RBP7.54□□□□□ -1.2
RTR1YER139C SLY41P22215 453 aa7.53□□□□□ -1.2
RTR1YER139C DIT2P21595 489 aa7.52□□□□□ -1.21
RTR1YER139C FPK1P53739 893 aa7.52□□□□□ -1.21
RTR1YER139C YMR196WQ04336 1088 aa7.5□□□□□ -1.21
RTR1YER139C YDL206WQ12424 762 aa7.48□□□□□ -1.21
RTR1YER139C UGA3P26370 528 aa7.47□□□□□ -1.21
RTR1YER139C RPA14P50106 137 aa7.47□□□□□ -1.21
RTR1YER139C TBF1Q02457 562 aa7.47□□□□□ -1.21
RTR1YER139C ALR1Q08269 859 aa7.47□□□□□ -1.21
RTR1YER139C SPB4P25808 606 aaPredicted RBP7.46□□□□□ -1.22
RTR1YER139C KIP2P28743 706 aa7.46□□□□□ -1.22
RTR1YER139C PTK2P47116 818 aaKnown RBP7.46□□□□□ -1.22
RTR1YER139C CAF120P53836 1060 aa7.46□□□□□ -1.22
RTR1YER139C DMA1P38823 416 aa7.44□□□□□ -1.22
RTR1YER139C PUS6P53294 404 aa7.44□□□□□ -1.22
RTR1YER139C OPT2Q06593 877 aa7.44□□□□□ -1.22
RTR1YER139C YPR097WQ06839 1073 aa7.44□□□□□ -1.22
RTR1YER139C SCJ1P25303 377 aa7.43□□□□□ -1.22
RTR1YER139C SRF1Q12516 437 aa7.43□□□□□ -1.22
RTR1YER139C TRM1P15565 570 aaKnown RBP7.42□□□□□ -1.22
RTR1YER139C IXR1P33417 597 aa7.42□□□□□ -1.22
RTR1YER139C ACO2P39533 789 aa7.41□□□□□ -1.22
RTR1YER139C MRT4P33201 236 aaKnown RBP7.4□□□□□ -1.22
RTR1YER139C HST2P53686 357 aa7.4□□□□□ -1.22
RTR1YER139C YLR346CQ06139 101 aa7.38□□□□□ -1.23
RTR1YER139C BUB1P41695 1021 aaKnown RBP RIP-Chip data7.37□□□□□ -1.23not detected
RTR1YER139C TYW1Q08960 810 aaKnown RBP7.37□□□□□ -1.23
RTR1YER139C NUP85P46673 744 aa7.35□□□□□ -1.23
RTR1YER139C MMP1Q12372 583 aa7.35□□□□□ -1.23
RTR1YER139C GLY1P37303 387 aaKnown RBP7.34□□□□□ -1.23
RTR1YER139C ESS1P22696 170 aa7.32□□□□□ -1.24
RTR1YER139C GLN1P32288 370 aaKnown RBP7.32□□□□□ -1.24
RTR1YER139C YIR007WP40566 764 aa7.32□□□□□ -1.24
RTR1YER139C SCW11P53189 542 aa7.32□□□□□ -1.24
RTR1YER139C MIP1P15801 1254 aa7.31□□□□□ -1.24
RTR1YER139C RTT106P40161 455 aa7.31□□□□□ -1.24
RTR1YER139C TY1A-BLQ12266 440 aa7.31□□□□□ -1.24
RTR1YER139C VAC17P25591 423 aa7.3□□□□□ -1.24
RTR1YER139C YGR035CP53222 116 aa7.3□□□□□ -1.24
Retrieved 100 of 5,963 RNA–protein pairs in 11 ms