RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C TY1A-MR2P0CX69 440 aa7.38□□□□□ -1.23
RUB1YDR139C RPN1P38764 993 aaKnown RBP7.38□□□□□ -1.23
RUB1YDR139C TY1A-JR2P47099 440 aa7.38□□□□□ -1.23
RUB1YDR139C NUP42P49686 430 aaKnown RBP7.38□□□□□ -1.23
RUB1YDR139C TY1A-DR1Q03856 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-ML1Q04706 440 aaKnown RBP7.38□□□□□ -1.23
RUB1YDR139C TY1A-BRQ12217 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-NL2Q12470 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-GR2Q12485 440 aa7.38□□□□□ -1.23
RUB1YDR139C RPP1BP10622 106 aaKnown RBP7.37□□□□□ -1.23
RUB1YDR139C SEC2P17065 759 aa7.37□□□□□ -1.23
RUB1YDR139C YNR021WP53723 404 aaKnown RBP7.37□□□□□ -1.23
RUB1YDR139C NUD1P32336 851 aa7.36□□□□□ -1.23
RUB1YDR139C BRE2P43132 505 aa7.36□□□□□ -1.23
RUB1YDR139C TUM1Q08686 304 aaKnown RBP7.36□□□□□ -1.23
RUB1YDR139C FRK1Q03002 865 aaPredicted RBP7.35□□□□□ -1.23
RUB1YDR139C DIT2P21595 489 aa7.34□□□□□ -1.23
RUB1YDR139C ORC6P38826 435 aa7.32□□□□□ -1.24
RUB1YDR139C LAM6Q08001 693 aa7.32□□□□□ -1.24
RUB1YDR139C ERG12P07277 443 aa7.31□□□□□ -1.24
RUB1YDR139C GAP1P19145 602 aaPredicted RBP7.31□□□□□ -1.24
RUB1YDR139C MRF1P30775 413 aaPredicted RBP7.31□□□□□ -1.24
RUB1YDR139C PSE1P32337 1089 aaKnown RBP7.31□□□□□ -1.24
RUB1YDR139C GCD11P32481 527 aaKnown RBP7.3□□□□□ -1.24
RUB1YDR139C PEX21P50091 288 aa7.3□□□□□ -1.24
RUB1YDR139C GLC3P32775 704 aa7.29□□□□□ -1.24
RUB1YDR139C CSC1Q06538 782 aa7.29□□□□□ -1.24
RUB1YDR139C GBP2P25555 427 aaKnown RBP RIP-Chip data7.27□□□□□ -1.25not detected
RUB1YDR139C AIM7Q12156 149 aa7.27□□□□□ -1.25
RUB1YDR139C ATF2P53296 535 aa7.26□□□□□ -1.25
RUB1YDR139C BDP1P46678 594 aa7.25□□□□□ -1.25
RUB1YDR139C ERF2Q06551 359 aa7.25□□□□□ -1.25
RUB1YDR139C TFB4Q12004 338 aa7.25□□□□□ -1.25
RUB1YDR139C RGR1P19263 1082 aa7.24□□□□□ -1.25
RUB1YDR139C MET22P32179 357 aa7.24□□□□□ -1.25
RUB1YDR139C MVP1P40959 511 aaKnown RBP7.24□□□□□ -1.25
RUB1YDR139C RRN7P40992 514 aa7.24□□□□□ -1.25
RUB1YDR139C CLB5P30283 435 aa7.22□□□□□ -1.25
RUB1YDR139C KIN1P13185 1064 aa7.21□□□□□ -1.26
RUB1YDR139C SPT16P32558 1035 aaKnown RBP7.2□□□□□ -1.26
RUB1YDR139C TEA1P47988 759 aa7.19□□□□□ -1.26
RUB1YDR139C YPR109WQ06104 294 aa7.19□□□□□ -1.26
RUB1YDR139C NPL4P33755 580 aa7.17□□□□□ -1.26
RUB1YDR139C GCR2Q01722 534 aa7.17□□□□□ -1.26
RUB1YDR139C KEX2P13134 814 aa7.15□□□□□ -1.26
RUB1YDR139C CDC4P07834 779 aa7.14□□□□□ -1.27
RUB1YDR139C PUS5Q06244 254 aa7.12□□□□□ -1.27
RUB1YDR139C MET32Q12041 191 aa7.12□□□□□ -1.27
RUB1YDR139C YDL176WQ12027 708 aa7.1□□□□□ -1.27
RUB1YDR139C PAC1P39946 494 aaKnown RBP7.09□□□□□ -1.27
RUB1YDR139C NIS1P53939 407 aa7.08□□□□□ -1.28
RUB1YDR139C YDR444WQ04093 687 aa7.08□□□□□ -1.28
RUB1YDR139C YMR196WQ04336 1088 aa7.08□□□□□ -1.28
RUB1YDR139C ENV9Q08651 330 aa7.08□□□□□ -1.28
RUB1YDR139C ASH1P34233 588 aa7.07□□□□□ -1.28
RUB1YDR139C FPK1P53739 893 aa7.06□□□□□ -1.28
RUB1YDR139C SIT4P20604 311 aa7.05□□□□□ -1.28
RUB1YDR139C CSN12P47130 423 aa7.05□□□□□ -1.28
RUB1YDR139C GUA1P38625 525 aaKnown RBP7.04□□□□□ -1.28
RUB1YDR139C HST2P53686 357 aa7.04□□□□□ -1.28
RUB1YDR139C SSA2P10592 639 aaKnown RBP7.03□□□□□ -1.28
RUB1YDR139C HED1Q03937 162 aa7.03□□□□□ -1.28
RUB1YDR139C GLN1P32288 370 aaKnown RBP7.02□□□□□ -1.29
RUB1YDR139C RTF1P53064 558 aa7.02□□□□□ -1.29
RUB1YDR139C MMP1Q12372 583 aa7.01□□□□□ -1.29
RUB1YDR139C HGH1P48362 394 aaKnown RBP7□□□□□ -1.29
RUB1YDR139C YNL115CP53925 644 aa7□□□□□ -1.29
RUB1YDR139C HPC2Q01448 625 aa7□□□□□ -1.29
RUB1YDR139C MOD5P07884 428 aa6.99□□□□□ -1.29
RUB1YDR139C TYW1Q08960 810 aaKnown RBP6.99□□□□□ -1.29
RUB1YDR139C KTR1P27810 393 aaKnown RBP6.98□□□□□ -1.29
RUB1YDR139C DMA2P53924 522 aa6.98□□□□□ -1.29
RUB1YDR139C AGE1Q04412 482 aa6.98□□□□□ -1.29
RUB1YDR139C SLY41P22215 453 aa6.97□□□□□ -1.29
RUB1YDR139C SCJ1P25303 377 aa6.97□□□□□ -1.29
RUB1YDR139C LCB5Q06147 687 aaKnown RBP6.97□□□□□ -1.29
RUB1YDR139C ESS1P22696 170 aa6.95□□□□□ -1.3
RUB1YDR139C BRL1P38770 471 aa6.95□□□□□ -1.3
RUB1YDR139C RRD1P40454 393 aaKnown RBP6.95□□□□□ -1.3
RUB1YDR139C YJR115WP47152 169 aa6.95□□□□□ -1.3
RUB1YDR139C TUB4P53378 473 aa6.95□□□□□ -1.3
RUB1YDR139C PKH3Q03306 898 aaPredicted RBP6.94□□□□□ -1.3
RUB1YDR139C PAT1P25644 796 aaKnown RBP6.93□□□□□ -1.3
RUB1YDR139C TFB3Q03290 321 aa6.93□□□□□ -1.3
RUB1YDR139C AFT1P22149 690 aa6.91□□□□□ -1.3
RUB1YDR139C YJU3P28321 313 aa6.91□□□□□ -1.3
RUB1YDR139C PUS6P53294 404 aa6.9□□□□□ -1.3
RUB1YDR139C HST3P53687 447 aa6.9□□□□□ -1.3
RUB1YDR139C RAD59Q12223 238 aa6.9□□□□□ -1.3
RUB1YDR139C ARG8P18544 423 aa6.89□□□□□ -1.31
RUB1YDR139C BUB1P41695 1021 aaKnown RBP RIP-Chip data6.89□□□□□ -1.31not detected
RUB1YDR139C CAF120P53836 1060 aa6.89□□□□□ -1.31
RUB1YDR139C TBF1Q02457 562 aa6.89□□□□□ -1.31
RUB1YDR139C TRM1P15565 570 aaKnown RBP6.88□□□□□ -1.31
RUB1YDR139C TAF7Q05021 590 aa6.86□□□□□ -1.31
RUB1YDR139C PKC1P24583 1151 aa6.85□□□□□ -1.31
RUB1YDR139C RSC30P38781 883 aa6.85□□□□□ -1.31
RUB1YDR139C YBL036CP38197 257 aa6.83□□□□□ -1.32
RUB1YDR139C YDL206WQ12424 762 aa6.83□□□□□ -1.32
RUB1YDR139C CSE4P36012 229 aa6.82□□□□□ -1.32
Retrieved 100 of 5,963 RNA–protein pairs in 7.9 ms