RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 STK11IPQ8N1F8 1099 aa3.53□□□□□ -1.84
SCN1A-219ENST00000641575 MSNP26038 577 aaKnown RBP3.53□□□□□ -1.84
SCN1A-219ENST00000641575 NOC3LQ8WTT2 800 aaKnown RBP3.53□□□□□ -1.84
SCN1A-219ENST00000641575 R3HCC1Q9Y3T6 440 aaKnown RBP3.53□□□□□ -1.84
SCN1A-219ENST00000641575 URB1O60287 2271 aaKnown RBP3.53□□□□□ -1.85
SCN1A-219ENST00000641575 CHMP4CQ96CF2 233 aa3.52□□□□□ -1.85
SCN1A-219ENST00000641575 A0A0U1RQG5 324 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-219ENST00000641575 CCDC9Q9Y3X0 531 aaKnown RBP3.52□□□□□ -1.85
SCN1A-219ENST00000641575 PODXL2Q9NZ53 605 aa3.52□□□□□ -1.85
SCN1A-219ENST00000641575 GOLGA6L1Q8N7Z2 621 aa3.52□□□□□ -1.85
SCN1A-219ENST00000641575 NINQ8N4C6 2090 aa3.52□□□□□ -1.85
SCN1A-219ENST00000641575 HEATR1Q9H583 2144 aaKnown RBP3.52□□□□□ -1.85
SCN1A-219ENST00000641575 ARID3AQ99856 593 aa3.52□□□□□ -1.85
SCN1A-219ENST00000641575 SMC4Q9NTJ3 1288 aa3.52□□□□□ -1.85
SCN1A-219ENST00000641575 NOP58Q9Y2X3 529 aaKnown RBP3.52□□□□□ -1.85
SCN1A-219ENST00000641575 KAT6AQ92794 2004 aa3.51□□□□□ -1.85
SCN1A-219ENST00000641575 TMEM87AQ8NBN3 555 aa3.51□□□□□ -1.85
SCN1A-219ENST00000641575 CACNA1CQ13936 2221 aa3.51□□□□□ -1.85
SCN1A-219ENST00000641575 RSPH6AQ9H0K4 717 aa3.51□□□□□ -1.85
SCN1A-219ENST00000641575 ANKRD12Q6UB98 2062 aa3.51□□□□□ -1.85
SCN1A-219ENST00000641575 HSP90AA2PQ14568 343 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-219ENST00000641575 TRIM34Q9BYJ4 488 aa3.51□□□□□ -1.85
SCN1A-219ENST00000641575 LAS1LQ9Y4W2 734 aaKnown RBP3.51□□□□□ -1.85
SCN1A-219ENST00000641575 PABPN1Q86U42 306 aaKnown RBP eCLIP3.51□□□□□ -1.85
SCN1A-219ENST00000641575 TPRP12270 2363 aaKnown RBP3.51□□□□□ -1.85
SCN1A-219ENST00000641575 RRP12Q5JTH9 1297 aaKnown RBP3.5□□□□□ -1.85
SCN1A-219ENST00000641575 MYO9BQ13459 2157 aa3.5□□□□□ -1.85
SCN1A-219ENST00000641575 HSP90B1P14625 803 aaKnown RBP3.5□□□□□ -1.85
SCN1A-219ENST00000641575 TPM4P67936 248 aa3.5□□□□□ -1.85
SCN1A-219ENST00000641575 PRKCSHP14314 528 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-219ENST00000641575 RDXP35241 583 aaKnown RBP3.5□□□□□ -1.85
SCN1A-219ENST00000641575 IL27Q8NEV9 243 aa3.5□□□□□ -1.85
SCN1A-219ENST00000641575 GOLGA6L4A6NEF3 574 aa3.49□□□□□ -1.85
SCN1A-219ENST00000641575 LMOD2Q6P5Q4 547 aa3.49□□□□□ -1.85
SCN1A-219ENST00000641575 C16orf71Q8IYS4 520 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-219ENST00000641575 PKNOX2Q96KN3 472 aa3.49□□□□□ -1.85
SCN1A-219ENST00000641575 DESP17661 470 aa3.49□□□□□ -1.85
SCN1A-219ENST00000641575 CFAP53Q96M91 514 aa3.49□□□□□ -1.85
SCN1A-219ENST00000641575 NOL10Q9BSC4 688 aaKnown RBP3.49□□□□□ -1.85
SCN1A-219ENST00000641575 LRRFIP1Q32MZ4 808 aaKnown RBP3.49□□□□□ -1.85
SCN1A-219ENST00000641575 NUDCQ9Y266 331 aa3.49□□□□□ -1.85
SCN1A-219ENST00000641575 ISY1Q9ULR0 285 aaKnown RBP3.48□□□□□ -1.85
SCN1A-219ENST00000641575 ZBTB7CA1YPR0 619 aa3.48□□□□□ -1.85
SCN1A-219ENST00000641575 RWDD1Q9H446 243 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-219ENST00000641575 SEPT11Q9NVA2 429 aaKnown RBP3.48□□□□□ -1.85
SCN1A-219ENST00000641575 HTATSF1O43719 755 aaKnown RBP3.48□□□□□ -1.85
SCN1A-219ENST00000641575 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.48□□□□□ -1.85
SCN1A-219ENST00000641575 CREBBPQ92793 2442 aa3.48□□□□□ -1.85
SCN1A-219ENST00000641575 MYO15BQ96JP2 1530 aa3.48□□□□□ -1.85
SCN1A-219ENST00000641575 WDR43Q15061 677 aaKnown RBP eCLIP3.48□□□□□ -1.85
SCN1A-219ENST00000641575 MS4A1P11836 297 aa3.48□□□□□ -1.85
SCN1A-219ENST00000641575 GTF2E1P29083 439 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-219ENST00000641575 FAM50AQ14320 339 aaKnown RBP3.48□□□□□ -1.85
SCN1A-219ENST00000641575 DRC7Q8IY82 874 aa3.48□□□□□ -1.85
SCN1A-219ENST00000641575 VSIG10Q8N0Z9 540 aa3.48□□□□□ -1.85
SCN1A-219ENST00000641575 RBM27Q9P2N5 1060 aaKnown RBP3.48□□□□□ -1.85
SCN1A-219ENST00000641575 CEP290O15078 2479 aa3.48□□□□□ -1.85
SCN1A-219ENST00000641575 SPDYE4A6NLX3 237 aa3.47□□□□□ -1.85
SCN1A-219ENST00000641575 DHX37Q8IY37 1157 aaKnown RBP3.47□□□□□ -1.85
SCN1A-219ENST00000641575 NEFHP12036 1026 aa3.47□□□□□ -1.85
SCN1A-219ENST00000641575 FEZ1Q99689 392 aa3.47□□□□□ -1.85
SCN1A-219ENST00000641575 PPP1R1BQ9UD71 204 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-219ENST00000641575 FGD1P98174 961 aa3.47□□□□□ -1.85
SCN1A-219ENST00000641575 MIER1Q8N108 512 aa3.47□□□□□ -1.85
SCN1A-219ENST00000641575 PAF1Q8N7H5 531 aa3.47□□□□□ -1.85
SCN1A-219ENST00000641575 EID1Q9Y6B2 187 aa3.47□□□□□ -1.85
SCN1A-219ENST00000641575 TPRNQ4KMQ1 711 aa3.47□□□□□ -1.85
SCN1A-219ENST00000641575 CACNA1BQ00975 2339 aa3.47□□□□□ -1.85
SCN1A-219ENST00000641575 NOM1Q5C9Z4 860 aaKnown RBP3.47□□□□□ -1.85
SCN1A-219ENST00000641575 KIF3AQ9Y496 699 aa3.47□□□□□ -1.85
SCN1A-219ENST00000641575 FRAT2O75474 233 aaPredicted RBP3.46□□□□□ -1.85
SCN1A-219ENST00000641575 BEGAINQ9BUH8 593 aa3.46□□□□□ -1.85
SCN1A-219ENST00000641575 HNRNPUQ00839 825 aaKnown RBP eCLIP3.46□□□□□ -1.86
SCN1A-219ENST00000641575 NOC2LQ9Y3T9 749 aaKnown RBP3.46□□□□□ -1.86
SCN1A-219ENST00000641575 SCN8AQ9UQD0 1980 aa3.46□□□□□ -1.86
SCN1A-219ENST00000641575 CCDC88CQ9P219 2028 aa3.46□□□□□ -1.86
SCN1A-219ENST00000641575 AXDND1Q5T1B0 1012 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-219ENST00000641575 GNL2Q13823 731 aaKnown RBP3.46□□□□□ -1.86
SCN1A-219ENST00000641575 ZNF771Q7L3S4 317 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-219ENST00000641575 MYH11P35749 1972 aa3.46□□□□□ -1.86
SCN1A-219ENST00000641575 GOLGA6L3A6NEY3 463 aa3.45□□□□□ -1.86
SCN1A-219ENST00000641575 ZNF777Q9ULD5 760 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-219ENST00000641575 HSP90AB1P08238 724 aaKnown RBP3.45□□□□□ -1.86
SCN1A-219ENST00000641575 EVPLQ92817 2033 aa3.45□□□□□ -1.86
SCN1A-219ENST00000641575 TPM2P07951 284 aa3.45□□□□□ -1.86
SCN1A-219ENST00000641575 PLCB2Q00722 1185 aa3.45□□□□□ -1.86
SCN1A-219ENST00000641575 NAP1L2Q9ULW6 460 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-219ENST00000641575 RB1CC1Q8TDY2 1594 aa3.45□□□□□ -1.86
SCN1A-219ENST00000641575 MSH5O43196 834 aa3.44□□□□□ -1.86
SCN1A-219ENST00000641575 CCDC43Q96MW1 224 aaKnown RBP3.44□□□□□ -1.86
SCN1A-219ENST00000641575 ERCC6Q03468 1493 aa3.44□□□□□ -1.86
SCN1A-219ENST00000641575 KANK1Q14678 1352 aa3.44□□□□□ -1.86
SCN1A-219ENST00000641575 PATL2C9JE40 543 aaKnown RBP3.44□□□□□ -1.86
SCN1A-219ENST00000641575 ZRSR2Q15696 482 aaKnown RBP3.44□□□□□ -1.86
SCN1A-219ENST00000641575 ODF2Q5BJF6 829 aa3.44□□□□□ -1.86
SCN1A-219ENST00000641575 ZCCHC6Q5VYS8 1495 aaKnown RBP3.44□□□□□ -1.86
SCN1A-219ENST00000641575 MCCP23508 829 aa3.44□□□□□ -1.86
SCN1A-219ENST00000641575 PPM1FP49593 454 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-219ENST00000641575 EVA1CP58658 441 aa3.44□□□□□ -1.86
SCN1A-219ENST00000641575 HSCBQ8IWL3 235 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms