RNA–Protein interactions for RNA: ENST00000641247.1

PHGDH-212, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 710 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-212ENST00000641247 ARHGEF12Q9NZN5 1544 aa16.63■□□□□ 0.25
PHGDH-212ENST00000641247 DMRT2Q9Y5R5 561 aa16.62■□□□□ 0.25
PHGDH-212ENST00000641247 EFCAB5A4FU69 1503 aa16.61■□□□□ 0.25
PHGDH-212ENST00000641247 STRCQ7RTU9 1775 aa16.61■□□□□ 0.25
PHGDH-212ENST00000641247 ATP10AO60312 1499 aa16.6■□□□□ 0.25
PHGDH-212ENST00000641247 CSRNP3Q8WYN3 585 aa16.59■□□□□ 0.25
PHGDH-212ENST00000641247 PLCH2O75038 1416 aa16.58■□□□□ 0.24
PHGDH-212ENST00000641247 SPATA31D1Q6ZQQ2 1576 aa16.58■□□□□ 0.24
PHGDH-212ENST00000641247 FER1L4A9Z1Z3 1794 aa16.58■□□□□ 0.24
PHGDH-212ENST00000641247 C9orf84Q5VXU9 1444 aa16.55■□□□□ 0.24
PHGDH-212ENST00000641247 AFAP1Q8N556 730 aa16.55■□□□□ 0.24
PHGDH-212ENST00000641247 LTBP4Q8N2S1 1624 aa16.55■□□□□ 0.24
PHGDH-212ENST00000641247 PTPRTO14522 1441 aa16.54■□□□□ 0.24
PHGDH-212ENST00000641247 PREX1Q8TCU6 1659 aa16.54■□□□□ 0.24
PHGDH-212ENST00000641247 UHRF1BP1Q6BDS2 1440 aa16.53■□□□□ 0.24
PHGDH-212ENST00000641247 CFAP74Q9C0B2 1584 aa16.53■□□□□ 0.24
PHGDH-212ENST00000641247 CDK13Q14004 1512 aaKnown RBP16.52■□□□□ 0.24
PHGDH-212ENST00000641247 EFCAB2Q5VUJ9 269 aa16.5■□□□□ 0.23
PHGDH-212ENST00000641247 NCOA1Q15788 1441 aa16.44■□□□□ 0.22
PHGDH-212ENST00000641247 TRAPPC8Q9Y2L5 1435 aa16.44■□□□□ 0.22
PHGDH-212ENST00000641247 ZNF335Q9H4Z2 1342 aaPredicted RBP16.43■□□□□ 0.22
PHGDH-212ENST00000641247 NCKAP5LQ9HCH0 1330 aa16.43■□□□□ 0.22
PHGDH-212ENST00000641247 MYT1LQ9UL68 1186 aa16.42■□□□□ 0.22
PHGDH-212ENST00000641247 ATP1B4Q9UN42 357 aaPredicted RBP16.42■□□□□ 0.22
PHGDH-212ENST00000641247 IQSEC2Q5JU85 1478 aa16.42■□□□□ 0.22
PHGDH-212ENST00000641247 UBAP1LF5GYI3 381 aa16.41■□□□□ 0.22
PHGDH-212ENST00000641247 ZNF518AQ6AHZ1 1483 aa16.41■□□□□ 0.22
PHGDH-212ENST00000641247 DIP2CQ9Y2E4 1556 aa16.4■□□□□ 0.22
PHGDH-212ENST00000641247 KDM5CP41229 1560 aa16.39■□□□□ 0.21
PHGDH-212ENST00000641247 C3P01024 1663 aa16.39■□□□□ 0.21
PHGDH-212ENST00000641247 KIF14Q15058 1648 aa16.37■□□□□ 0.21
PHGDH-212ENST00000641247 SETD1BQ9UPS6 1966 aaKnown RBP16.37■□□□□ 0.21
PHGDH-212ENST00000641247 MLH3Q9UHC1 1453 aa16.36■□□□□ 0.21
PHGDH-212ENST00000641247 ESF1Q9H501 851 aaKnown RBP16.36■□□□□ 0.21
PHGDH-212ENST00000641247 REREQ9P2R6 1566 aa16.34■□□□□ 0.21
PHGDH-212ENST00000641247 CAMSAP1Q5T5Y3 1602 aa16.34■□□□□ 0.21
PHGDH-212ENST00000641247 ABCA6Q8N139 1617 aa16.34■□□□□ 0.21
PHGDH-212ENST00000641247 AGLP35573 1532 aa16.34■□□□□ 0.21
PHGDH-212ENST00000641247 ARHGAP5Q13017 1502 aa16.34■□□□□ 0.21
PHGDH-212ENST00000641247 HSPA1LP34931 641 aa16.33■□□□□ 0.2
PHGDH-212ENST00000641247 EHMT2Q96KQ7 1210 aa16.33■□□□□ 0.2
PHGDH-212ENST00000641247 TROQ12816 1431 aaPredicted RBP16.32■□□□□ 0.2
PHGDH-212ENST00000641247 ZMYM3Q14202 1370 aa16.32■□□□□ 0.2
PHGDH-212ENST00000641247 MYO5CQ9NQX4 1742 aa16.31■□□□□ 0.2
PHGDH-212ENST00000641247 CDK11AQ9UQ88 783 aaPredicted RBP16.31■□□□□ 0.2
PHGDH-212ENST00000641247 NPATQ14207 1427 aa16.28■□□□□ 0.2
PHGDH-212ENST00000641247 CNTLNQ9NXG0 1405 aa16.28■□□□□ 0.2
PHGDH-212ENST00000641247 ARHGAP35Q9NRY4 1499 aa16.27■□□□□ 0.19
PHGDH-212ENST00000641247 EEA1Q15075 1411 aa16.27■□□□□ 0.19
PHGDH-212ENST00000641247 PIP4K2BP78356 416 aa16.26■□□□□ 0.19
PHGDH-212ENST00000641247 PKD2Q13563 968 aa16.26■□□□□ 0.19
PHGDH-212ENST00000641247 FMN1Q68DA7 1419 aa16.26■□□□□ 0.19
PHGDH-212ENST00000641247 ABCC1P33527 1531 aa16.24■□□□□ 0.19
PHGDH-212ENST00000641247 TCOF1Q13428 1488 aaKnown RBP16.24■□□□□ 0.19
PHGDH-212ENST00000641247 KIDINS220Q9ULH0 1771 aa16.23■□□□□ 0.19
PHGDH-212ENST00000641247 CDC42BPBQ9Y5S2 1711 aa16.23■□□□□ 0.19
PHGDH-212ENST00000641247 SCAF1Q9H7N4 1312 aaKnown RBP16.22■□□□□ 0.19
PHGDH-212ENST00000641247 MED1Q15648 1581 aaPredicted RBP16.22■□□□□ 0.19
PHGDH-212ENST00000641247 PTPRKQ15262 1439 aa16.22■□□□□ 0.19
PHGDH-212ENST00000641247 PPP6R1Q9UPN7 881 aa16.22■□□□□ 0.19
PHGDH-212ENST00000641247 PLA2R1Q13018 1463 aa16.22■□□□□ 0.19
PHGDH-212ENST00000641247 CLIP1P30622 1438 aa16.21■□□□□ 0.19
PHGDH-212ENST00000641247 UBTFP17480 764 aaKnown RBP16.21■□□□□ 0.19
PHGDH-212ENST00000641247 HNRNPMP52272 730 aaKnown RBP eCLIP16.21■□□□□ 0.191e-6■■■■□ 22.8
PHGDH-212ENST00000641247 ZNF777Q9ULD5 760 aaPredicted RBP16.2■□□□□ 0.18
PHGDH-212ENST00000641247 GGT6Q6P531 493 aa16.18■□□□□ 0.18
PHGDH-212ENST00000641247 LRRIQ1Q96JM4 1722 aa16.18■□□□□ 0.18
PHGDH-212ENST00000641247 ITSN2Q9NZM3 1697 aa16.17■□□□□ 0.18
PHGDH-212ENST00000641247 SAMD9LQ8IVG5 1584 aa16.17■□□□□ 0.18
PHGDH-212ENST00000641247 SPAG9O60271 1321 aaKnown RBP16.17■□□□□ 0.18
PHGDH-212ENST00000641247 TOM1O60784 492 aa16.16■□□□□ 0.18
PHGDH-212ENST00000641247 CEP170BQ9Y4F5 1589 aaPredicted RBP16.16■□□□□ 0.18
PHGDH-212ENST00000641247 PREX2Q70Z35 1606 aa16.15■□□□□ 0.18
PHGDH-212ENST00000641247 MYO3AQ8NEV4 1616 aa16.15■□□□□ 0.18
PHGDH-212ENST00000641247 MROH2AA6NES4 1674 aa16.14■□□□□ 0.18
PHGDH-212ENST00000641247 FBXO31Q5XUX0 539 aaPredicted RBP16.13■□□□□ 0.17
PHGDH-212ENST00000641247 ALKQ9UM73 1620 aa16.12■□□□□ 0.17
PHGDH-212ENST00000641247 CLTCQ00610 1675 aaKnown RBP16.12■□□□□ 0.17
PHGDH-212ENST00000641247 SENP3Q9H4L4 574 aaPredicted RBP16.12■□□□□ 0.17
PHGDH-212ENST00000641247 RGS17Q9UGC6 210 aaPredicted RBP16.12■□□□□ 0.17
PHGDH-212ENST00000641247 ZNF142P52746 1687 aaPredicted RBP16.11■□□□□ 0.17
PHGDH-212ENST00000641247 PHF23Q9BUL5 403 aaPredicted RBP16.11■□□□□ 0.17
PHGDH-212ENST00000641247 SUPT6HQ7KZ85 1726 aaKnown RBP16.11■□□□□ 0.17
PHGDH-212ENST00000641247 A2MP01023 1474 aa16.1■□□□□ 0.17
PHGDH-212ENST00000641247 SHANK2Q9UPX8 1470 aa16.1■□□□□ 0.17
PHGDH-212ENST00000641247 SYCP2Q9BX26 1530 aa16.1■□□□□ 0.17
PHGDH-212ENST00000641247 GPATCH8Q9UKJ3 1502 aaKnown RBP16.1■□□□□ 0.17
PHGDH-212ENST00000641247 A2ML1A8K2U0 1454 aa16.1■□□□□ 0.17
PHGDH-212ENST00000641247 PLXNC1O60486 1568 aa16.09■□□□□ 0.17
PHGDH-212ENST00000641247 DNMT1P26358 1616 aaKnown RBP16.08■□□□□ 0.17
PHGDH-212ENST00000641247 CASKIN1Q8WXD9 1431 aa16.08■□□□□ 0.16
PHGDH-212ENST00000641247 NEURL4Q96JN8 1562 aa16.08■□□□□ 0.16
PHGDH-212ENST00000641247 CPS1P31327 1500 aa16.07■□□□□ 0.16
PHGDH-212ENST00000641247 CDC42BPAQ5VT25 1732 aa16.07■□□□□ 0.16
PHGDH-212ENST00000641247 ATP7AQ04656 1500 aa16.06■□□□□ 0.16
PHGDH-212ENST00000641247 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.05■□□□□ 0.16
PHGDH-212ENST00000641247 ZNF644Q9H582 1327 aaPredicted RBP16.05■□□□□ 0.16
PHGDH-212ENST00000641247 VWDEQ8N2E2 1590 aa16.04■□□□□ 0.16
PHGDH-212ENST00000641247 KIAA1107Q9UPP5 1409 aa16.04■□□□□ 0.16
PHGDH-212ENST00000641247 CFDP1Q9UEE9 299 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms