RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 PREX1Q8TCU6 1659 aa19.01■□□□□ 0.63
CLN3-257ENST00000637110 MAGI2Q86UL8 1455 aa19.01■□□□□ 0.63
CLN3-257ENST00000637110 YEATS2Q9ULM3 1422 aa18.99■□□□□ 0.63
CLN3-257ENST00000637110 MLECQ14165 292 aa18.97■□□□□ 0.63
CLN3-257ENST00000637110 SIGLEC1Q9BZZ2 1709 aa18.97■□□□□ 0.63
CLN3-257ENST00000637110 PLEKHD1A6NEE1 506 aa18.96■□□□□ 0.63
CLN3-257ENST00000637110 ATP1B4Q9UN42 357 aaPredicted RBP18.95■□□□□ 0.62
CLN3-257ENST00000637110 NUP153P49790 1475 aaKnown RBP18.95■□□□□ 0.62
CLN3-257ENST00000637110 STRCQ7RTU9 1775 aa18.92■□□□□ 0.62
CLN3-257ENST00000637110 HECW1Q76N89 1606 aa18.92■□□□□ 0.62
CLN3-257ENST00000637110 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.91■□□□□ 0.62
CLN3-257ENST00000637110 ARHGEF12Q9NZN5 1544 aa18.91■□□□□ 0.62
CLN3-257ENST00000637110 UHRF1BP1Q6BDS2 1440 aa18.9■□□□□ 0.62
CLN3-257ENST00000637110 SETD1BQ9UPS6 1966 aaKnown RBP18.9■□□□□ 0.62
CLN3-257ENST00000637110 ATP10AO60312 1499 aa18.87■□□□□ 0.61
CLN3-257ENST00000637110 C9orf84Q5VXU9 1444 aa18.87■□□□□ 0.61
CLN3-257ENST00000637110 ARHGAP35Q9NRY4 1499 aa18.86■□□□□ 0.61
CLN3-257ENST00000637110 PTPRTO14522 1441 aa18.85■□□□□ 0.61
CLN3-257ENST00000637110 FMN1Q68DA7 1419 aa18.85■□□□□ 0.61
CLN3-257ENST00000637110 IQSEC2Q5JU85 1478 aa18.84■□□□□ 0.61
CLN3-257ENST00000637110 SCAPERQ9BY12 1400 aa18.84■□□□□ 0.61
CLN3-257ENST00000637110 CEBPAP49715 358 aaPredicted RBP18.83■□□□□ 0.6
CLN3-257ENST00000637110 PLCH2O75038 1416 aa18.79■□□□□ 0.6
CLN3-257ENST00000637110 CDK13Q14004 1512 aaKnown RBP18.78■□□□□ 0.6
CLN3-257ENST00000637110 LTBP4Q8N2S1 1624 aa18.77■□□□□ 0.6
CLN3-257ENST00000637110 CDK11AQ9UQ88 783 aaPredicted RBP18.76■□□□□ 0.59
CLN3-257ENST00000637110 EFCAB2Q5VUJ9 269 aa18.75■□□□□ 0.59
CLN3-257ENST00000637110 MYO5CQ9NQX4 1742 aa18.74■□□□□ 0.59
CLN3-257ENST00000637110 ZNF518AQ6AHZ1 1483 aa18.74■□□□□ 0.59
CLN3-257ENST00000637110 ESF1Q9H501 851 aaKnown RBP18.73■□□□□ 0.59
CLN3-257ENST00000637110 CLIP1P30622 1438 aa18.73■□□□□ 0.59
CLN3-257ENST00000637110 C3P01024 1663 aa18.73■□□□□ 0.59
CLN3-257ENST00000637110 MYT1LQ9UL68 1186 aa18.71■□□□□ 0.59
CLN3-257ENST00000637110 REREQ9P2R6 1566 aa18.7■□□□□ 0.58
CLN3-257ENST00000637110 KDM5CP41229 1560 aa18.69■□□□□ 0.58
CLN3-257ENST00000637110 NCOA1Q15788 1441 aa18.69■□□□□ 0.58
CLN3-257ENST00000637110 TRAPPC8Q9Y2L5 1435 aa18.69■□□□□ 0.58
CLN3-257ENST00000637110 DIP2CQ9Y2E4 1556 aa18.67■□□□□ 0.58
CLN3-257ENST00000637110 CASKIN1Q8WXD9 1431 aa18.66■□□□□ 0.58
CLN3-257ENST00000637110 UBAP1LF5GYI3 381 aa18.64■□□□□ 0.57
CLN3-257ENST00000637110 CNTLNQ9NXG0 1405 aa18.64■□□□□ 0.57
CLN3-257ENST00000637110 AGLP35573 1532 aa18.64■□□□□ 0.57
CLN3-257ENST00000637110 ARHGAP5Q13017 1502 aa18.64■□□□□ 0.57
CLN3-257ENST00000637110 AFAP1Q8N556 730 aa18.63■□□□□ 0.57
CLN3-257ENST00000637110 KIF14Q15058 1648 aa18.63■□□□□ 0.57
CLN3-257ENST00000637110 TROQ12816 1431 aaPredicted RBP18.62■□□□□ 0.57
CLN3-257ENST00000637110 CAMSAP1Q5T5Y3 1602 aa18.62■□□□□ 0.57
CLN3-257ENST00000637110 ABCA6Q8N139 1617 aa18.61■□□□□ 0.57
CLN3-257ENST00000637110 CCDC18Q5T9S5 1454 aa18.61■□□□□ 0.57
CLN3-257ENST00000637110 LOC105371045A0A1W2PR82 267 aa18.61■□□□□ 0.57
CLN3-257ENST00000637110 MLH3Q9UHC1 1453 aa18.6■□□□□ 0.57
CLN3-257ENST00000637110 LRRIQ1Q96JM4 1722 aa18.6■□□□□ 0.57
CLN3-257ENST00000637110 FYCO1Q9BQS8 1478 aa18.58■□□□□ 0.57
CLN3-257ENST00000637110 NPATQ14207 1427 aa18.58■□□□□ 0.57
CLN3-257ENST00000637110 CEP162Q5TB80 1403 aa18.58■□□□□ 0.57
CLN3-257ENST00000637110 MROH2AA6NES4 1674 aa18.57■□□□□ 0.56
CLN3-257ENST00000637110 ZNF335Q9H4Z2 1342 aaPredicted RBP18.56■□□□□ 0.56
CLN3-257ENST00000637110 PKD2Q13563 968 aa18.53■□□□□ 0.56
CLN3-257ENST00000637110 MED1Q15648 1581 aaPredicted RBP18.53■□□□□ 0.56
CLN3-257ENST00000637110 SUPT6HQ7KZ85 1726 aaKnown RBP18.53■□□□□ 0.56
CLN3-257ENST00000637110 NCKAP5LQ9HCH0 1330 aa18.52■□□□□ 0.56
CLN3-257ENST00000637110 PLA2R1Q13018 1463 aa18.52■□□□□ 0.55
CLN3-257ENST00000637110 CDC42BPBQ9Y5S2 1711 aa18.52■□□□□ 0.55
CLN3-257ENST00000637110 ZNF142P52746 1687 aaPredicted RBP18.5■□□□□ 0.55
CLN3-257ENST00000637110 ITSN2Q9NZM3 1697 aa18.5■□□□□ 0.55
CLN3-257ENST00000637110 ABCC1P33527 1531 aa18.49■□□□□ 0.55
CLN3-257ENST00000637110 KIDINS220Q9ULH0 1771 aa18.48■□□□□ 0.55
CLN3-257ENST00000637110 ZMYM3Q14202 1370 aa18.48■□□□□ 0.55
CLN3-257ENST00000637110 PREX2Q70Z35 1606 aa18.48■□□□□ 0.55
CLN3-257ENST00000637110 SCAF1Q9H7N4 1312 aaKnown RBP18.48■□□□□ 0.55
CLN3-257ENST00000637110 MTUS2Q5JR59 1369 aa18.47■□□□□ 0.55
CLN3-257ENST00000637110 ZNF777Q9ULD5 760 aaPredicted RBP18.47■□□□□ 0.55
CLN3-257ENST00000637110 MYO3AQ8NEV4 1616 aa18.47■□□□□ 0.55
CLN3-257ENST00000637110 PPP6R1Q9UPN7 881 aa18.46■□□□□ 0.55
CLN3-257ENST00000637110 TCOF1Q13428 1488 aaKnown RBP18.46■□□□□ 0.54
CLN3-257ENST00000637110 TOM1O60784 492 aa18.45■□□□□ 0.54
CLN3-257ENST00000637110 HSPA1LP34931 641 aa18.45■□□□□ 0.54
CLN3-257ENST00000637110 CEP170BQ9Y4F5 1589 aaPredicted RBP18.45■□□□□ 0.54
CLN3-257ENST00000637110 PHF23Q9BUL5 403 aaPredicted RBP18.44■□□□□ 0.54
CLN3-257ENST00000637110 PIP4K2BP78356 416 aa18.43■□□□□ 0.54
CLN3-257ENST00000637110 CLTCQ00610 1675 aaKnown RBP18.42■□□□□ 0.54
CLN3-257ENST00000637110 CCNB3Q8WWL7 1395 aa18.41■□□□□ 0.54
CLN3-257ENST00000637110 CPS1P31327 1500 aa18.4■□□□□ 0.54
CLN3-257ENST00000637110 CFDP1Q9UEE9 299 aaPredicted RBP18.39■□□□□ 0.53
CLN3-257ENST00000637110 SAMD9LQ8IVG5 1584 aa18.38■□□□□ 0.53
CLN3-257ENST00000637110 PTPRKQ15262 1439 aa18.38■□□□□ 0.53
CLN3-257ENST00000637110 CDC42BPAQ5VT25 1732 aa18.37■□□□□ 0.53
CLN3-257ENST00000637110 SPAG9O60271 1321 aaKnown RBP18.36■□□□□ 0.53
CLN3-257ENST00000637110 VPS8Q8N3P4 1428 aa18.36■□□□□ 0.53
CLN3-257ENST00000637110 GPATCH8Q9UKJ3 1502 aaKnown RBP18.36■□□□□ 0.53
CLN3-257ENST00000637110 POLR1AO95602 1720 aaPredicted RBP18.35■□□□□ 0.53
CLN3-257ENST00000637110 EHBP1L1Q8N3D4 1523 aa18.34■□□□□ 0.53
CLN3-257ENST00000637110 A2ML1A8K2U0 1454 aa18.33■□□□□ 0.53
CLN3-257ENST00000637110 HNRNPMP52272 730 aaKnown RBP eCLIP18.33■□□□□ 0.52
CLN3-257ENST00000637110 PLXNC1O60486 1568 aa18.33■□□□□ 0.52
CLN3-257ENST00000637110 SHANK2Q9UPX8 1470 aa18.33■□□□□ 0.52
CLN3-257ENST00000637110 DNMT1P26358 1616 aaKnown RBP18.32■□□□□ 0.52
CLN3-257ENST00000637110 ATP7AQ04656 1500 aa18.32■□□□□ 0.52
CLN3-257ENST00000637110 APLP2Q06481 763 aa18.31■□□□□ 0.52
CLN3-257ENST00000637110 GGT6Q6P531 493 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms