RNA–Protein interactions for RNA: ENST00000622134.4

COL25A1-209, Transcript of collagen type XXV alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL25A1, Length 4,819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1-209ENST00000622134 GRIN2BQ13224 1484 aa13.59□□□□□ -0.23
COL25A1-209ENST00000622134 IFT140Q96RY7 1462 aa13.59□□□□□ -0.23
COL25A1-209ENST00000622134 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.59□□□□□ -0.23
COL25A1-209ENST00000622134 LAS1LQ9Y4W2 734 aaKnown RBP13.59□□□□□ -0.23
COL25A1-209ENST00000622134 NPHP1O15259 732 aa13.58□□□□□ -0.24
COL25A1-209ENST00000622134 HDGFL2Q7Z4V5 671 aaPredicted RBP13.58□□□□□ -0.24
COL25A1-209ENST00000622134 ARXQ96QS3 562 aa13.57□□□□□ -0.24
COL25A1-209ENST00000622134 SRPK2P78362 688 aaKnown RBP13.57□□□□□ -0.24
COL25A1-209ENST00000622134 FGD5Q6ZNL6 1462 aa13.57□□□□□ -0.24
COL25A1-209ENST00000622134 RSPH6AQ9H0K4 717 aa13.56□□□□□ -0.24
COL25A1-209ENST00000622134 FANCIQ9NVI1 1328 aa13.56□□□□□ -0.24
COL25A1-209ENST00000622134 L1TD1Q5T7N2 865 aaKnown RBP13.56□□□□□ -0.24
COL25A1-209ENST00000622134 HMGXB3Q12766 1538 aa13.56□□□□□ -0.24
COL25A1-209ENST00000622134 CCER2I3L3R5 266 aa13.56□□□□□ -0.24
COL25A1-209ENST00000622134 CHMP4AQ9BY43 222 aa13.56□□□□□ -0.24
COL25A1-209ENST00000622134 CC2D2AQ9P2K1 1620 aa13.55□□□□□ -0.24
COL25A1-209ENST00000622134 NUP155O75694 1391 aa13.53□□□□□ -0.24
COL25A1-209ENST00000622134 DCAF11Q8TEB1 546 aa13.53□□□□□ -0.24
COL25A1-209ENST00000622134 CHMP4BQ9H444 224 aaKnown RBP13.53□□□□□ -0.24
COL25A1-209ENST00000622134 USP35Q9P2H5 1018 aa13.53□□□□□ -0.24
COL25A1-209ENST00000622134 EIF3AQ14152 1382 aaKnown RBP13.52□□□□□ -0.24
COL25A1-209ENST00000622134 PKD2Q13563 968 aa13.52□□□□□ -0.25
COL25A1-209ENST00000622134 UACAQ9BZF9 1416 aa13.51□□□□□ -0.25
COL25A1-209ENST00000622134 FHOD3Q2V2M9 1422 aa13.5□□□□□ -0.25
COL25A1-209ENST00000622134 HNRNPMP52272 730 aaKnown RBP eCLIP13.48□□□□□ -0.25
COL25A1-209ENST00000622134 IPO9Q96P70 1041 aaKnown RBP13.48□□□□□ -0.25
COL25A1-209ENST00000622134 CFTRP13569 1480 aa13.48□□□□□ -0.25
COL25A1-209ENST00000622134 SETD5Q9C0A6 1442 aa13.48□□□□□ -0.25
COL25A1-209ENST00000622134 B4GALNT3Q6L9W6 998 aa13.47□□□□□ -0.25
COL25A1-209ENST00000622134 CSB-PGBD3P0DP91 1061 aa13.47□□□□□ -0.25
COL25A1-209ENST00000622134 CDK11BP21127 795 aaKnown RBP13.47□□□□□ -0.25
COL25A1-209ENST00000622134 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.47□□□□□ -0.25
COL25A1-209ENST00000622134 GOLGA6L22H0YM25 854 aa13.46□□□□□ -0.26
COL25A1-209ENST00000622134 MS4A1P11836 297 aa13.45□□□□□ -0.26
COL25A1-209ENST00000622134 VGFO15240 615 aaPredicted RBP13.45□□□□□ -0.26
COL25A1-209ENST00000622134 STK26Q9P289 416 aa13.45□□□□□ -0.26
COL25A1-209ENST00000622134 TERF2IPQ9NYB0 399 aa13.44□□□□□ -0.26
COL25A1-209ENST00000622134 CCDC9Q9Y3X0 531 aaKnown RBP13.44□□□□□ -0.26
COL25A1-209ENST00000622134 AQRO60306 1485 aaKnown RBP eCLIP13.44□□□□□ -0.26
COL25A1-209ENST00000622134 SALL2Q9Y467 1007 aaPredicted RBP13.44□□□□□ -0.26
COL25A1-209ENST00000622134 PAK3O75914 559 aaPredicted RBP13.43□□□□□ -0.26
COL25A1-209ENST00000622134 RAD54L2Q9Y4B4 1467 aa13.42□□□□□ -0.26
COL25A1-209ENST00000622134 IGF1RP08069 1367 aa13.42□□□□□ -0.26
COL25A1-209ENST00000622134 NGDNQ8NEJ9 315 aaKnown RBP13.42□□□□□ -0.26
COL25A1-209ENST00000622134 HSP90AA2PQ14568 343 aaPredicted RBP13.41□□□□□ -0.26
COL25A1-209ENST00000622134 TMX4Q9H1E5 349 aaPredicted RBP13.41□□□□□ -0.26
COL25A1-209ENST00000622134 MORC1Q86VD1 984 aa13.41□□□□□ -0.26
COL25A1-209ENST00000622134 RTF1Q92541 710 aaKnown RBP13.41□□□□□ -0.26
COL25A1-209ENST00000622134 SYNJ2O15056 1496 aa13.4□□□□□ -0.26
COL25A1-209ENST00000622134 POGZQ7Z3K3 1410 aa13.4□□□□□ -0.26
COL25A1-209ENST00000622134 CALD1Q05682 793 aaKnown RBP13.4□□□□□ -0.26
COL25A1-209ENST00000622134 VSIG10Q8N0Z9 540 aa13.4□□□□□ -0.26
COL25A1-209ENST00000622134 STAC3Q96MF2 364 aa13.4□□□□□ -0.26
COL25A1-209ENST00000622134 LAMC3Q9Y6N6 1575 aa13.4□□□□□ -0.27
COL25A1-209ENST00000622134 U2SURPO15042 1029 aaKnown RBP13.39□□□□□ -0.27
COL25A1-209ENST00000622134 PRG4Q92954 1404 aaPredicted RBP13.38□□□□□ -0.27
COL25A1-209ENST00000622134 SAFB2Q14151 953 aaKnown RBP eCLIP13.38□□□□□ -0.27
COL25A1-209ENST00000622134 MPHOSPH9Q99550 1183 aa13.38□□□□□ -0.27
COL25A1-209ENST00000622134 HIRIP3Q9BW71 556 aaPredicted RBP13.37□□□□□ -0.27
COL25A1-209ENST00000622134 TCERG1O14776 1098 aaKnown RBP13.37□□□□□ -0.27
COL25A1-209ENST00000622134 PKNOX2Q96KN3 472 aa13.35□□□□□ -0.27
COL25A1-209ENST00000622134 GOLGA2Q08379 1002 aa13.35□□□□□ -0.27
COL25A1-209ENST00000622134 ANO8Q9HCE9 1232 aaPredicted RBP13.35□□□□□ -0.27
COL25A1-209ENST00000622134 MYOM3Q5VTT5 1437 aa13.34□□□□□ -0.27
COL25A1-209ENST00000622134 DNTTIP2Q5QJE6 756 aaKnown RBP13.34□□□□□ -0.27
COL25A1-209ENST00000622134 HDAC5Q9UQL6 1122 aa13.34□□□□□ -0.27
COL25A1-209ENST00000622134 ROCK2O75116 1388 aaKnown RBP13.33□□□□□ -0.27
COL25A1-209ENST00000622134 TOPBP1Q92547 1522 aa13.33□□□□□ -0.28
COL25A1-209ENST00000622134 MSNP26038 577 aaKnown RBP13.33□□□□□ -0.28
COL25A1-209ENST00000622134 FTSJ3Q8IY81 847 aaKnown RBP13.33□□□□□ -0.28
COL25A1-209ENST00000622134 PLEKHH2Q8IVE3 1493 aa13.33□□□□□ -0.28
COL25A1-209ENST00000622134 SOX12O15370 315 aa13.33□□□□□ -0.28
COL25A1-209ENST00000622134 CCDC144AA2RUR9 1427 aa13.32□□□□□ -0.28
COL25A1-209ENST00000622134 PTMAP06454 111 aaKnown RBP13.32□□□□□ -0.28
COL25A1-209ENST00000622134 NESP48681 1621 aa13.31□□□□□ -0.28
COL25A1-209ENST00000622134 GSE1Q14687 1217 aa13.31□□□□□ -0.28
COL25A1-209ENST00000622134 KANK4Q5T7N3 995 aaPredicted RBP13.31□□□□□ -0.28
COL25A1-209ENST00000622134 CASC1Q6TDU7 716 aa13.31□□□□□ -0.28
COL25A1-209ENST00000622134 MEX3CQ5U5Q3 659 aaKnown RBP13.31□□□□□ -0.28
COL25A1-209ENST00000622134 FOXD1Q16676 465 aa13.3□□□□□ -0.28
COL25A1-209ENST00000622134 ATF3P18847 181 aa13.3□□□□□ -0.28
COL25A1-209ENST00000622134 DNMBPQ6XZF7 1577 aa13.3□□□□□ -0.28
COL25A1-209ENST00000622134 SIN3AQ96ST3 1273 aa13.29□□□□□ -0.28
COL25A1-209ENST00000622134 CUX1P39880 1505 aa13.28□□□□□ -0.28
COL25A1-209ENST00000622134 AMPHP49418 695 aa13.27□□□□□ -0.28
COL25A1-209ENST00000622134 SNAPC4Q5SXM2 1469 aa13.27□□□□□ -0.29
COL25A1-209ENST00000622134 THEMISQ8N1K5 641 aaPredicted RBP13.27□□□□□ -0.29
COL25A1-209ENST00000622134 LMOD3Q0VAK6 560 aa13.26□□□□□ -0.29
COL25A1-209ENST00000622134 OS9Q13438 667 aaPredicted RBP13.26□□□□□ -0.29
COL25A1-209ENST00000622134 EVA1CP58658 441 aa13.26□□□□□ -0.29
COL25A1-209ENST00000622134 NEUROD2Q15784 382 aa13.26□□□□□ -0.29
COL25A1-209ENST00000622134 KTN1Q86UP2 1357 aaKnown RBP13.26□□□□□ -0.29
COL25A1-209ENST00000622134 CC2D1BQ5T0F9 858 aaKnown RBP13.25□□□□□ -0.29
COL25A1-209ENST00000622134 EVC2Q86UK5 1308 aa13.25□□□□□ -0.29
COL25A1-209ENST00000622134 DCAF8L1A6NGE4 600 aa13.24□□□□□ -0.29
COL25A1-209ENST00000622134 PTMSP20962 102 aa13.24□□□□□ -0.29
COL25A1-209ENST00000622134 GOLGA6L3A6NEY3 463 aa13.24□□□□□ -0.29
COL25A1-209ENST00000622134 POLA1P09884 1462 aaPredicted RBP13.24□□□□□ -0.29
COL25A1-209ENST00000622134 HMGB2P26583 209 aaKnown RBP13.23□□□□□ -0.29
COL25A1-209ENST00000622134 ARHGAP5Q13017 1502 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms