RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ARHGEF12Q9NZN5 1544 aa23.66■■□□□ 1.38
SHKBP1-218ENST00000598907 CEBPAP49715 358 aaPredicted RBP23.66■■□□□ 1.38
SHKBP1-218ENST00000598907 DMRT2Q9Y5R5 561 aa23.65■■□□□ 1.38
SHKBP1-218ENST00000598907 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.64■■□□□ 1.38
SHKBP1-218ENST00000598907 MAGI2Q86UL8 1455 aa23.63■■□□□ 1.37
SHKBP1-218ENST00000598907 UHRF1BP1Q6BDS2 1440 aa23.62■■□□□ 1.37
SHKBP1-218ENST00000598907 PLEKHD1A6NEE1 506 aa23.57■■□□□ 1.36
SHKBP1-218ENST00000598907 C9orf84Q5VXU9 1444 aa23.57■■□□□ 1.36
SHKBP1-218ENST00000598907 SCAPERQ9BY12 1400 aa23.55■■□□□ 1.36
SHKBP1-218ENST00000598907 LTBP4Q8N2S1 1624 aa23.55■■□□□ 1.36
SHKBP1-218ENST00000598907 RANGAP1P46060 587 aaPredicted RBP23.54■■□□□ 1.36
SHKBP1-218ENST00000598907 ATP10AO60312 1499 aa23.54■■□□□ 1.36
SHKBP1-218ENST00000598907 PTPRTO14522 1441 aa23.53■■□□□ 1.36
SHKBP1-218ENST00000598907 IQSEC2Q5JU85 1478 aa23.48■■□□□ 1.35
SHKBP1-218ENST00000598907 C3P01024 1663 aa23.46■■□□□ 1.35
SHKBP1-218ENST00000598907 CDK13Q14004 1512 aaKnown RBP23.44■■□□□ 1.34
SHKBP1-218ENST00000598907 PLCH2O75038 1416 aa23.42■■□□□ 1.34
SHKBP1-218ENST00000598907 SETD1BQ9UPS6 1966 aaKnown RBP23.4■■□□□ 1.34
SHKBP1-218ENST00000598907 MYO5CQ9NQX4 1742 aa23.39■■□□□ 1.34
SHKBP1-218ENST00000598907 MYT1LQ9UL68 1186 aa23.39■■□□□ 1.33
SHKBP1-218ENST00000598907 NCOA1Q15788 1441 aa23.39■■□□□ 1.33
SHKBP1-218ENST00000598907 UBAP1LF5GYI3 381 aa23.38■■□□□ 1.33
SHKBP1-218ENST00000598907 DIP2CQ9Y2E4 1556 aa23.37■■□□□ 1.33
SHKBP1-218ENST00000598907 ZNF518AQ6AHZ1 1483 aa23.36■■□□□ 1.33
SHKBP1-218ENST00000598907 ABCA6Q8N139 1617 aa23.33■■□□□ 1.33
SHKBP1-218ENST00000598907 KDM5CP41229 1560 aa23.33■■□□□ 1.33
SHKBP1-218ENST00000598907 CAMSAP1Q5T5Y3 1602 aa23.33■■□□□ 1.32
SHKBP1-218ENST00000598907 ESF1Q9H501 851 aaKnown RBP23.32■■□□□ 1.32
SHKBP1-218ENST00000598907 ZNF335Q9H4Z2 1342 aaPredicted RBP23.32■■□□□ 1.32
SHKBP1-218ENST00000598907 MED1Q15648 1581 aaPredicted RBP23.31■■□□□ 1.32
SHKBP1-218ENST00000598907 EFCAB2Q5VUJ9 269 aa23.31■■□□□ 1.32
SHKBP1-218ENST00000598907 TRAPPC8Q9Y2L5 1435 aa23.31■■□□□ 1.32
SHKBP1-218ENST00000598907 AFAP1Q8N556 730 aa23.3■■□□□ 1.32
SHKBP1-218ENST00000598907 ARHGAP5Q13017 1502 aa23.29■■□□□ 1.32
SHKBP1-218ENST00000598907 KIF14Q15058 1648 aa23.29■■□□□ 1.32
SHKBP1-218ENST00000598907 REREQ9P2R6 1566 aa23.28■■□□□ 1.32
SHKBP1-218ENST00000598907 CSRNP3Q8WYN3 585 aa23.25■■□□□ 1.31
SHKBP1-218ENST00000598907 SCAF1Q9H7N4 1312 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-218ENST00000598907 NCKAP5LQ9HCH0 1330 aa23.25■■□□□ 1.31
SHKBP1-218ENST00000598907 ATP1B4Q9UN42 357 aaPredicted RBP23.23■■□□□ 1.31
SHKBP1-218ENST00000598907 AGLP35573 1532 aa23.22■■□□□ 1.31
SHKBP1-218ENST00000598907 CNTLNQ9NXG0 1405 aa23.18■■□□□ 1.3
SHKBP1-218ENST00000598907 HSPA1LP34931 641 aa23.18■■□□□ 1.3
SHKBP1-218ENST00000598907 SUPT6HQ7KZ85 1726 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-218ENST00000598907 MLH3Q9UHC1 1453 aa23.17■■□□□ 1.3
SHKBP1-218ENST00000598907 MYO3AQ8NEV4 1616 aa23.16■■□□□ 1.3
SHKBP1-218ENST00000598907 PIP4K2BP78356 416 aa23.16■■□□□ 1.3
SHKBP1-218ENST00000598907 MROH2AA6NES4 1674 aa23.14■■□□□ 1.29
SHKBP1-218ENST00000598907 PHF23Q9BUL5 403 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-218ENST00000598907 NPATQ14207 1427 aa23.14■■□□□ 1.29
SHKBP1-218ENST00000598907 ZNF142P52746 1687 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-218ENST00000598907 ITSN2Q9NZM3 1697 aa23.13■■□□□ 1.29
SHKBP1-218ENST00000598907 CDC42BPBQ9Y5S2 1711 aa23.11■■□□□ 1.29
SHKBP1-218ENST00000598907 ABCC1P33527 1531 aa23.11■■□□□ 1.29
SHKBP1-218ENST00000598907 KIDINS220Q9ULH0 1771 aa23.1■■□□□ 1.29
SHKBP1-218ENST00000598907 PLA2R1Q13018 1463 aa23.1■■□□□ 1.29
SHKBP1-218ENST00000598907 CEP170BQ9Y4F5 1589 aaPredicted RBP23.1■■□□□ 1.29
SHKBP1-218ENST00000598907 TROQ12816 1431 aaPredicted RBP23.09■■□□□ 1.29
SHKBP1-218ENST00000598907 CLIP1P30622 1438 aa23.08■■□□□ 1.29
SHKBP1-218ENST00000598907 CDK11AQ9UQ88 783 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-218ENST00000598907 TCOF1Q13428 1488 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-218ENST00000598907 CLTCQ00610 1675 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-218ENST00000598907 PPP6R1Q9UPN7 881 aa23.07■■□□□ 1.28
SHKBP1-218ENST00000598907 PREX2Q70Z35 1606 aa23.07■■□□□ 1.28
SHKBP1-218ENST00000598907 ZMYM3Q14202 1370 aa23.06■■□□□ 1.28
SHKBP1-218ENST00000598907 PKD2Q13563 968 aa23.06■■□□□ 1.28
SHKBP1-218ENST00000598907 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
SHKBP1-218ENST00000598907 FMN1Q68DA7 1419 aa23.02■■□□□ 1.28
SHKBP1-218ENST00000598907 LRRIQ1Q96JM4 1722 aa23.02■■□□□ 1.28
SHKBP1-218ENST00000598907 SENP3Q9H4L4 574 aaPredicted RBP23.01■■□□□ 1.27
SHKBP1-218ENST00000598907 TOM1O60784 492 aa23■■□□□ 1.27
SHKBP1-218ENST00000598907 EEA1Q15075 1411 aa22.98■■□□□ 1.27
SHKBP1-218ENST00000598907 SAMD9LQ8IVG5 1584 aa22.97■■□□□ 1.27
SHKBP1-218ENST00000598907 PTPRKQ15262 1439 aa22.97■■□□□ 1.27
SHKBP1-218ENST00000598907 CPS1P31327 1500 aa22.97■■□□□ 1.27
SHKBP1-218ENST00000598907 EHMT2Q96KQ7 1210 aa22.96■■□□□ 1.27
SHKBP1-218ENST00000598907 POLR1AO95602 1720 aaPredicted RBP22.95■■□□□ 1.26
SHKBP1-218ENST00000598907 ARHGAP35Q9NRY4 1499 aa22.92■■□□□ 1.26
SHKBP1-218ENST00000598907 CDC42BPAQ5VT25 1732 aa22.92■■□□□ 1.26
SHKBP1-218ENST00000598907 NEURL4Q96JN8 1562 aa22.92■■□□□ 1.26
SHKBP1-218ENST00000598907 SYCP2Q9BX26 1530 aa22.92■■□□□ 1.26
SHKBP1-218ENST00000598907 SHANK2Q9UPX8 1470 aa22.92■■□□□ 1.26
SHKBP1-218ENST00000598907 DNMT1P26358 1616 aaKnown RBP22.91■■□□□ 1.26
SHKBP1-218ENST00000598907 ZNF777Q9ULD5 760 aaPredicted RBP22.9■■□□□ 1.26
SHKBP1-218ENST00000598907 A2ML1A8K2U0 1454 aa22.9■■□□□ 1.26
SHKBP1-218ENST00000598907 ALKQ9UM73 1620 aa22.9■■□□□ 1.26
SHKBP1-218ENST00000598907 PLXNC1O60486 1568 aa22.89■■□□□ 1.26
SHKBP1-218ENST00000598907 ATP7AQ04656 1500 aa22.89■■□□□ 1.26
SHKBP1-218ENST00000598907 SPAG9O60271 1321 aaKnown RBP22.88■■□□□ 1.25
SHKBP1-218ENST00000598907 GGT6Q6P531 493 aa22.88■■□□□ 1.25
SHKBP1-218ENST00000598907 A2MP01023 1474 aa22.85■■□□□ 1.25
SHKBP1-218ENST00000598907 INO80Q9ULG1 1556 aaPredicted RBP22.84■■□□□ 1.25
SHKBP1-218ENST00000598907 VWDEQ8N2E2 1590 aa22.84■■□□□ 1.25
SHKBP1-218ENST00000598907 UBTFP17480 764 aaKnown RBP22.82■■□□□ 1.24
SHKBP1-218ENST00000598907 HNRNPMP52272 730 aaKnown RBP eCLIP22.8■■□□□ 1.24
SHKBP1-218ENST00000598907 CCDC18Q5T9S5 1454 aa22.78■■□□□ 1.24
SHKBP1-218ENST00000598907 TNRQ92752 1358 aa22.76■■□□□ 1.23
SHKBP1-218ENST00000598907 RNF17Q9BXT8 1623 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-218ENST00000598907 RGS17Q9UGC6 210 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-218ENST00000598907 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms