RNA–Protein interactions for RNA: ENST00000581273.5

TVP23C-208, Transcript of trans-golgi network vesicle protein 23 homolog C, humanhuman

TSL 3

Gene TVP23C, Length 488 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23C-208ENST00000581273 KDM5BQ9UGL1 1544 aa11.3□□□□□ -0.6
TVP23C-208ENST00000581273 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.3□□□□□ -0.6
TVP23C-208ENST00000581273 HNRNPUL2Q1KMD3 747 aaKnown RBP11.3□□□□□ -0.6
TVP23C-208ENST00000581273 KCNH8Q96L42 1107 aa11.3□□□□□ -0.6
TVP23C-208ENST00000581273 CFAP43Q8NDM7 1665 aa11.3□□□□□ -0.6
TVP23C-208ENST00000581273 RAPGEF3O95398 923 aa11.29□□□□□ -0.6
TVP23C-208ENST00000581273 WDR7Q9Y4E6 1490 aa11.29□□□□□ -0.6
TVP23C-208ENST00000581273 ARAP3Q8WWN8 1544 aa11.29□□□□□ -0.6
TVP23C-208ENST00000581273 SAMD1Q6SPF0 538 aaPredicted RBP11.28□□□□□ -0.6
TVP23C-208ENST00000581273 DISP1Q96F81 1524 aa11.28□□□□□ -0.6
TVP23C-208ENST00000581273 PREX1Q8TCU6 1659 aa11.26□□□□□ -0.61
TVP23C-208ENST00000581273 PTPRTO14522 1441 aa11.26□□□□□ -0.61
TVP23C-208ENST00000581273 MLECQ14165 292 aa11.23□□□□□ -0.61
TVP23C-208ENST00000581273 CLSPNQ9HAW4 1339 aa11.23□□□□□ -0.61
TVP23C-208ENST00000581273 RAPGEF2Q9Y4G8 1499 aa11.23□□□□□ -0.61
TVP23C-208ENST00000581273 UGGT2Q9NYU1 1516 aa11.23□□□□□ -0.61
TVP23C-208ENST00000581273 KIAA0556O60303 1618 aa11.23□□□□□ -0.61
TVP23C-208ENST00000581273 PIP4K2BP78356 416 aa11.22□□□□□ -0.61
TVP23C-208ENST00000581273 GTF3C3Q9Y5Q9 886 aa11.22□□□□□ -0.61
TVP23C-208ENST00000581273 ARID3CA6NKF2 412 aa11.21□□□□□ -0.61
TVP23C-208ENST00000581273 CEBPAP49715 358 aaPredicted RBP11.21□□□□□ -0.61
TVP23C-208ENST00000581273 FER1L4A9Z1Z3 1794 aa11.21□□□□□ -0.62
TVP23C-208ENST00000581273 NEUROD1Q13562 356 aa11.2□□□□□ -0.62
TVP23C-208ENST00000581273 SRCAPQ6ZRS2 3230 aa11.2□□□□□ -0.62
TVP23C-208ENST00000581273 FRMPD1Q5SYB0 1578 aa11.2□□□□□ -0.62
TVP23C-208ENST00000581273 SIGLEC1Q9BZZ2 1709 aa11.19□□□□□ -0.62
TVP23C-208ENST00000581273 LOC105371045A0A1W2PR82 267 aa11.19□□□□□ -0.62
TVP23C-208ENST00000581273 RGS17Q9UGC6 210 aaPredicted RBP11.19□□□□□ -0.62
TVP23C-208ENST00000581273 ATF5Q9Y2D1 282 aaPredicted RBP11.19□□□□□ -0.62
TVP23C-208ENST00000581273 CTTNBP2Q8WZ74 1663 aa11.19□□□□□ -0.62
TVP23C-208ENST00000581273 TTC37Q6PGP7 1564 aa11.18□□□□□ -0.62
TVP23C-208ENST00000581273 ZNF335Q9H4Z2 1342 aaPredicted RBP11.17□□□□□ -0.62
TVP23C-208ENST00000581273 ARHGEF40Q8TER5 1519 aa11.16□□□□□ -0.62
TVP23C-208ENST00000581273 UHRF1BP1Q6BDS2 1440 aa11.16□□□□□ -0.62
TVP23C-208ENST00000581273 P3H3Q8IVL6 736 aa11.15□□□□□ -0.62
TVP23C-208ENST00000581273 RNF39Q9H2S5 420 aa11.15□□□□□ -0.62
TVP23C-208ENST00000581273 POGZQ7Z3K3 1410 aa11.15□□□□□ -0.62
TVP23C-208ENST00000581273 GOLGA3Q08378 1498 aa11.14□□□□□ -0.63
TVP23C-208ENST00000581273 FANCAO15360 1455 aa11.13□□□□□ -0.63
TVP23C-208ENST00000581273 SETD1AO15047 1707 aaKnown RBP11.13□□□□□ -0.63
TVP23C-208ENST00000581273 ABCA8O94911 1581 aa11.13□□□□□ -0.63
TVP23C-208ENST00000581273 DIEXFQ68CQ4 756 aaKnown RBP11.13□□□□□ -0.63
TVP23C-208ENST00000581273 FAM9AQ8IZU1 332 aaPredicted RBP11.12□□□□□ -0.63
TVP23C-208ENST00000581273 SETD1BQ9UPS6 1966 aaKnown RBP11.1□□□□□ -0.63
TVP23C-208ENST00000581273 APLP2Q06481 763 aa11.1□□□□□ -0.63
TVP23C-208ENST00000581273 POTEAQ6S8J7 498 aa11.1□□□□□ -0.63
TVP23C-208ENST00000581273 PHLDB1Q86UU1 1377 aa11.09□□□□□ -0.63
TVP23C-208ENST00000581273 RANGAP1P46060 587 aaPredicted RBP11.08□□□□□ -0.64
TVP23C-208ENST00000581273 NCOA1Q15788 1441 aa11.08□□□□□ -0.64
TVP23C-208ENST00000581273 AKNAQ7Z591 1439 aa11.07□□□□□ -0.64
TVP23C-208ENST00000581273 ATP10BO94823 1461 aa11.06□□□□□ -0.64
TVP23C-208ENST00000581273 CCER1Q8TC90 406 aaPredicted RBP11.05□□□□□ -0.64
TVP23C-208ENST00000581273 NEO1Q92859 1461 aa11.05□□□□□ -0.64
TVP23C-208ENST00000581273 NCKAP5LQ9HCH0 1330 aa11.05□□□□□ -0.64
TVP23C-208ENST00000581273 ARHGEF12Q9NZN5 1544 aa11.04□□□□□ -0.64
TVP23C-208ENST00000581273 TOM1O60784 492 aa11.04□□□□□ -0.64
TVP23C-208ENST00000581273 C1QBPQ07021 282 aaKnown RBP11.04□□□□□ -0.64
TVP23C-208ENST00000581273 RICTORQ6R327 1708 aa11.04□□□□□ -0.64
TVP23C-208ENST00000581273 PRXQ9BXM0 1461 aa11.03□□□□□ -0.64
TVP23C-208ENST00000581273 ABCA9Q8IUA7 1624 aa11.02□□□□□ -0.64
TVP23C-208ENST00000581273 ZFYVE16Q7Z3T8 1539 aa11.01□□□□□ -0.65
TVP23C-208ENST00000581273 UPF1Q92900 1129 aaKnown RBP eCLIP11.01□□□□□ -0.65
TVP23C-208ENST00000581273 RAPGEF6Q8TEU7 1601 aa11.01□□□□□ -0.65
TVP23C-208ENST00000581273 DENND4BO75064 1496 aaPredicted RBP11□□□□□ -0.65
TVP23C-208ENST00000581273 CAMSAP1Q5T5Y3 1602 aa11□□□□□ -0.65
TVP23C-208ENST00000581273 ZNF219Q9P2Y4 722 aaPredicted RBP10.98□□□□□ -0.65
TVP23C-208ENST00000581273 ZNF316A6NFI3 1004 aaPredicted RBP10.97□□□□□ -0.65
TVP23C-208ENST00000581273 FHOD3Q2V2M9 1422 aa10.97□□□□□ -0.65
TVP23C-208ENST00000581273 EFCAB5A4FU69 1503 aa10.97□□□□□ -0.65
TVP23C-208ENST00000581273 C3P01024 1663 aa10.96□□□□□ -0.65
TVP23C-208ENST00000581273 ALKQ9UM73 1620 aa10.96□□□□□ -0.65
TVP23C-208ENST00000581273 SAMD9Q5K651 1589 aa10.96□□□□□ -0.65
TVP23C-208ENST00000581273 PLEKHD1A6NEE1 506 aa10.95□□□□□ -0.66
TVP23C-208ENST00000581273 ZMYM4Q5VZL5 1548 aa10.94□□□□□ -0.66
TVP23C-208ENST00000581273 NUP153P49790 1475 aaKnown RBP10.94□□□□□ -0.66
TVP23C-208ENST00000581273 SPINK5Q9NQ38 1064 aaPredicted RBP10.94□□□□□ -0.66
TVP23C-208ENST00000581273 HECW1Q76N89 1606 aa10.92□□□□□ -0.66
TVP23C-208ENST00000581273 ANP32EQ9BTT0 268 aa10.92□□□□□ -0.66
TVP23C-208ENST00000581273 TRAPPC8Q9Y2L5 1435 aa10.92□□□□□ -0.66
TVP23C-208ENST00000581273 ATP1B4Q9UN42 357 aaPredicted RBP10.91□□□□□ -0.66
TVP23C-208ENST00000581273 CFAP74Q9C0B2 1584 aa10.9□□□□□ -0.66
TVP23C-208ENST00000581273 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.89□□□□□ -0.67
TVP23C-208ENST00000581273 ATP10AO60312 1499 aa10.88□□□□□ -0.67
TVP23C-208ENST00000581273 MAGI2Q86UL8 1455 aa10.88□□□□□ -0.67
TVP23C-208ENST00000581273 PTPRKQ15262 1439 aa10.88□□□□□ -0.67
TVP23C-208ENST00000581273 C9orf84Q5VXU9 1444 aa10.88□□□□□ -0.67
TVP23C-208ENST00000581273 PKD2Q13563 968 aa10.87□□□□□ -0.67
TVP23C-208ENST00000581273 IFFO2Q5TF58 517 aa10.87□□□□□ -0.67
TVP23C-208ENST00000581273 CDK13Q14004 1512 aaKnown RBP10.86□□□□□ -0.67
TVP23C-208ENST00000581273 BCL11AQ9H165 835 aa10.86□□□□□ -0.67
TVP23C-208ENST00000581273 MYT1LQ9UL68 1186 aa10.86□□□□□ -0.67
TVP23C-208ENST00000581273 CPS1P31327 1500 aa10.85□□□□□ -0.67
TVP23C-208ENST00000581273 TRIM52Q96A61 297 aa10.85□□□□□ -0.67
TVP23C-208ENST00000581273 SCAPERQ9BY12 1400 aa10.84□□□□□ -0.67
TVP23C-208ENST00000581273 SUPT6HQ7KZ85 1726 aaKnown RBP10.84□□□□□ -0.67
TVP23C-208ENST00000581273 TCOF1Q13428 1488 aaKnown RBP10.83□□□□□ -0.68
TVP23C-208ENST00000581273 SHANK2Q9UPX8 1470 aa10.83□□□□□ -0.68
TVP23C-208ENST00000581273 CAPN15O75808 1086 aa10.83□□□□□ -0.68
TVP23C-208ENST00000581273 MYO5CQ9NQX4 1742 aa10.82□□□□□ -0.68
TVP23C-208ENST00000581273 EFCAB2Q5VUJ9 269 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms