RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 SUPT5HO00267 1087 aaKnown RBP16.49■□□□□ 0.23
CIITA-208ENST00000572665 MAP3K13O43283 966 aa16.49■□□□□ 0.23
CIITA-208ENST00000572665 TSHZ2Q9NRE2 1034 aa16.48■□□□□ 0.23
CIITA-208ENST00000572665 GRIN2BQ13224 1484 aa16.48■□□□□ 0.23
CIITA-208ENST00000572665 SNAPC4Q5SXM2 1469 aa16.48■□□□□ 0.23
CIITA-208ENST00000572665 GTPBP6O43824 516 aaPredicted RBP16.47■□□□□ 0.23
CIITA-208ENST00000572665 CHMP7Q8WUX9 453 aaPredicted RBP16.47■□□□□ 0.23
CIITA-208ENST00000572665 IFNL1Q8IU54 200 aa16.46■□□□□ 0.23
CIITA-208ENST00000572665 SYNJ1O43426 1573 aa16.46■□□□□ 0.23
CIITA-208ENST00000572665 CYB5RLQ6IPT4 315 aa16.45■□□□□ 0.22
CIITA-208ENST00000572665 PSEN1P49768 467 aa16.44■□□□□ 0.22
CIITA-208ENST00000572665 KDM2AQ9Y2K7 1162 aa16.43■□□□□ 0.22
CIITA-208ENST00000572665 PBRM1Q86U86 1689 aa16.43■□□□□ 0.22
CIITA-208ENST00000572665 SYNJ2O15056 1496 aa16.42■□□□□ 0.22
CIITA-208ENST00000572665 PHF12Q96QT6 1004 aa16.42■□□□□ 0.22
CIITA-208ENST00000572665 C19orf67A6NJJ6 358 aa16.41■□□□□ 0.22
CIITA-208ENST00000572665 GAPVD1Q14C86 1478 aa16.41■□□□□ 0.22
CIITA-208ENST00000572665 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
CIITA-208ENST00000572665 CLASP1Q7Z460 1538 aa16.39■□□□□ 0.21
CIITA-208ENST00000572665 ARAP1Q96P48 1450 aa16.38■□□□□ 0.21
CIITA-208ENST00000572665 RYDENQ9NUL5 291 aaKnown RBP16.37■□□□□ 0.21
CIITA-208ENST00000572665 WRNQ14191 1432 aaPredicted RBP eCLIP16.36■□□□□ 0.21
CIITA-208ENST00000572665 ABCA5Q8WWZ7 1642 aa16.36■□□□□ 0.21
CIITA-208ENST00000572665 BIVM-ERCC5R4GMW8 1640 aa16.33■□□□□ 0.2
CIITA-208ENST00000572665 TOP2BQ02880 1626 aa16.32■□□□□ 0.2
CIITA-208ENST00000572665 MS4A3Q96HJ5 214 aa16.25■□□□□ 0.19
CIITA-208ENST00000572665 GRIN2AQ12879 1464 aa16.24■□□□□ 0.19
CIITA-208ENST00000572665 ADAMTS12P58397 1594 aa16.24■□□□□ 0.19
CIITA-208ENST00000572665 MFRPQ9BY79 579 aa16.23■□□□□ 0.19
CIITA-208ENST00000572665 CABP2Q9NPB3 220 aa16.23■□□□□ 0.19
CIITA-208ENST00000572665 ERICH3Q5RHP9 1530 aa16.22■□□□□ 0.19
CIITA-208ENST00000572665 FHAD1B1AJZ9 1412 aa16.21■□□□□ 0.19
CIITA-208ENST00000572665 EFCAB3Q8N7B9 438 aa16.2■□□□□ 0.18
CIITA-208ENST00000572665 NUP160Q12769 1436 aa16.18■□□□□ 0.18
CIITA-208ENST00000572665 TRPC6Q9Y210 931 aa16.17■□□□□ 0.18
CIITA-208ENST00000572665 HAX1O00165 279 aa16.16■□□□□ 0.18
CIITA-208ENST00000572665 SOX12O15370 315 aa16.15■□□□□ 0.18
CIITA-208ENST00000572665 CEP170Q5SW79 1584 aa16.15■□□□□ 0.18
CIITA-208ENST00000572665 BCANQ96GW7 911 aa16.15■□□□□ 0.18
CIITA-208ENST00000572665 TMEM106CQ9BVX2 250 aa16.15■□□□□ 0.18
CIITA-208ENST00000572665 FBXO22Q8NEZ5 403 aa16.13■□□□□ 0.17
CIITA-208ENST00000572665 SHROOM2Q13796 1616 aa16.12■□□□□ 0.17
CIITA-208ENST00000572665 NLRP6P59044 892 aa16.12■□□□□ 0.17
CIITA-208ENST00000572665 PHF8Q9UPP1 1060 aa16.11■□□□□ 0.17
CIITA-208ENST00000572665 EVX2Q03828 476 aa16.1■□□□□ 0.17
CIITA-208ENST00000572665 TIE1P35590 1138 aa16.08■□□□□ 0.16
CIITA-208ENST00000572665 ERCC6L2Q5T890 1561 aa16.06■□□□□ 0.16
CIITA-208ENST00000572665 GALR2O43603 387 aaPredicted RBP16.06■□□□□ 0.16
CIITA-208ENST00000572665 GOLGA2Q08379 1002 aa16.06■□□□□ 0.16
CIITA-208ENST00000572665 KIF27Q86VH2 1401 aa16.03■□□□□ 0.16
CIITA-208ENST00000572665 TTLL13PA6NNM8 815 aa16.03■□□□□ 0.16
CIITA-208ENST00000572665 PPP1R37O75864 691 aa16.03■□□□□ 0.16
CIITA-208ENST00000572665 CLCN6P51797 869 aa16.03■□□□□ 0.16
CIITA-208ENST00000572665 JPH4Q96JJ6 628 aa16.03■□□□□ 0.16
CIITA-208ENST00000572665 PRG4Q92954 1404 aaPredicted RBP16.02■□□□□ 0.16
CIITA-208ENST00000572665 CUL7Q14999 1698 aa16.02■□□□□ 0.16
CIITA-208ENST00000572665 CADPS2Q86UW7 1296 aa16.02■□□□□ 0.16
CIITA-208ENST00000572665 BMP2KQ9NSY1 1161 aaPredicted RBP16.02■□□□□ 0.16
CIITA-208ENST00000572665 RUSC2Q8N2Y8 1516 aa16■□□□□ 0.15
CIITA-208ENST00000572665 MS4A4AQ96JQ5 239 aa15.99■□□□□ 0.15
CIITA-208ENST00000572665 MKRN3Q13064 507 aaKnown RBP15.98■□□□□ 0.15
CIITA-208ENST00000572665 KIAA0586Q9BVV6 1533 aa15.94■□□□□ 0.14
CIITA-208ENST00000572665 IGF1RP08069 1367 aa15.94■□□□□ 0.14
CIITA-208ENST00000572665 TRIM35Q9UPQ4 493 aa15.92■□□□□ 0.14
CIITA-208ENST00000572665 ILDR1Q86SU0 546 aaPredicted RBP15.89■□□□□ 0.13
CIITA-208ENST00000572665 KIF13AQ9H1H9 1805 aa15.89■□□□□ 0.13
CIITA-208ENST00000572665 CARMIL1Q5VZK9 1371 aa15.87■□□□□ 0.13
CIITA-208ENST00000572665 POTEHQ6S545 545 aa15.87■□□□□ 0.13
CIITA-208ENST00000572665 MAPKBP1O60336 1514 aa15.85■□□□□ 0.13
CIITA-208ENST00000572665 NBR1Q14596 966 aa15.85■□□□□ 0.13
CIITA-208ENST00000572665 WDR70Q9NW82 654 aa15.85■□□□□ 0.13
CIITA-208ENST00000572665 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.85■□□□□ 0.13
CIITA-208ENST00000572665 CARMIL2Q6F5E8 1435 aa15.85■□□□□ 0.13
CIITA-208ENST00000572665 ATN1P54259 1190 aaPredicted RBP15.84■□□□□ 0.13
CIITA-208ENST00000572665 ATMINO43313 823 aaPredicted RBP15.83■□□□□ 0.12
CIITA-208ENST00000572665 ADCY10Q96PN6 1610 aa15.83■□□□□ 0.12
CIITA-208ENST00000572665 ASTLQ6HA08 431 aaPredicted RBP15.82■□□□□ 0.12
CIITA-208ENST00000572665 ABCC10Q5T3U5 1492 aa15.82■□□□□ 0.12
CIITA-208ENST00000572665 GABBR2O75899 941 aa15.81■□□□□ 0.12
CIITA-208ENST00000572665 FAM69CQ0P6D2 419 aa15.81■□□□□ 0.12
CIITA-208ENST00000572665 IQGAP2Q13576 1575 aa15.8■□□□□ 0.12
CIITA-208ENST00000572665 PTPRGP23470 1445 aa15.8■□□□□ 0.12
CIITA-208ENST00000572665 P3H3Q8IVL6 736 aa15.8■□□□□ 0.12
CIITA-208ENST00000572665 TNIKQ9UKE5 1360 aa15.77■□□□□ 0.12
CIITA-208ENST00000572665 DIP2BQ9P265 1576 aa15.77■□□□□ 0.11
CIITA-208ENST00000572665 RAPGEF2Q9Y4G8 1499 aa15.76■□□□□ 0.11
CIITA-208ENST00000572665 NCKAP5LQ9HCH0 1330 aa15.75■□□□□ 0.11
CIITA-208ENST00000572665 IER5LQ5T953 404 aa15.74■□□□□ 0.11
CIITA-208ENST00000572665 KCNV2Q8TDN2 545 aa15.74■□□□□ 0.11
CIITA-208ENST00000572665 PDCD7Q8N8D1 485 aaKnown RBP15.73■□□□□ 0.11
CIITA-208ENST00000572665 IRX5P78411 483 aaPredicted RBP15.72■□□□□ 0.11
CIITA-208ENST00000572665 DPY19L2Q6NUT2 758 aa15.72■□□□□ 0.11
CIITA-208ENST00000572665 CRISPLD2Q9H0B8 497 aa15.72■□□□□ 0.11
CIITA-208ENST00000572665 TTBK1Q5TCY1 1321 aaPredicted RBP15.71■□□□□ 0.11
CIITA-208ENST00000572665 ABCC2Q92887 1545 aa15.71■□□□□ 0.11
CIITA-208ENST00000572665 PDE4AP27815 886 aa15.7■□□□□ 0.1
CIITA-208ENST00000572665 UHRF1BP1LA0JNW5 1464 aa15.7■□□□□ 0.1
CIITA-208ENST00000572665 UGGT2Q9NYU1 1516 aa15.69■□□□□ 0.1
CIITA-208ENST00000572665 PLB1Q6P1J6 1458 aa15.69■□□□□ 0.1
CIITA-208ENST00000572665 TSPOAP1O95153 1857 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms