RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 SHANK2Q9UPX8 1470 aa8.91□□□□□ -0.98
CLN3-223ENST00000566472 ADGBQ8N7X0 1667 aa8.91□□□□□ -0.98
CLN3-223ENST00000566472 KIF14Q15058 1648 aa8.91□□□□□ -0.98
CLN3-223ENST00000566472 PRG4Q92954 1404 aaPredicted RBP8.9□□□□□ -0.98
CLN3-223ENST00000566472 YTHDC1Q96MU7 727 aaKnown RBP8.9□□□□□ -0.98
CLN3-223ENST00000566472 RRP7BPQ9NSQ0 103 aa8.9□□□□□ -0.98
CLN3-223ENST00000566472 CROCC2H7BZ55 1655 aa8.89□□□□□ -0.99
CLN3-223ENST00000566472 KDM6BO15054 1643 aa8.89□□□□□ -0.99
CLN3-223ENST00000566472 ABCC10Q5T3U5 1492 aa8.89□□□□□ -0.99
CLN3-223ENST00000566472 MPHOSPH9Q99550 1183 aa8.87□□□□□ -0.99
CLN3-223ENST00000566472 CFDP1Q9UEE9 299 aaPredicted RBP8.87□□□□□ -0.99
CLN3-223ENST00000566472 CHIC2Q9UKJ5 165 aa8.87□□□□□ -0.99
CLN3-223ENST00000566472 ATP10BO94823 1461 aa8.87□□□□□ -0.99
CLN3-223ENST00000566472 RPRD2Q5VT52 1461 aaKnown RBP8.87□□□□□ -0.99
CLN3-223ENST00000566472 SHROOM2Q13796 1616 aa8.87□□□□□ -0.99
CLN3-223ENST00000566472 ANKRD30BQ9BXX2 1392 aa8.86□□□□□ -0.99
CLN3-223ENST00000566472 CCER2I3L3R5 266 aa8.86□□□□□ -0.99
CLN3-223ENST00000566472 TRIM52Q96A61 297 aa8.86□□□□□ -0.99
CLN3-223ENST00000566472 NCOA1Q15788 1441 aa8.86□□□□□ -0.99
CLN3-223ENST00000566472 ARHGEF5Q12774 1597 aa8.86□□□□□ -0.99
CLN3-223ENST00000566472 ANKRD30AQ9BXX3 1397 aa8.86□□□□□ -0.99
CLN3-223ENST00000566472 PLEKHD1A6NEE1 506 aa8.85□□□□□ -0.99
CLN3-223ENST00000566472 ARID3CA6NKF2 412 aa8.85□□□□□ -0.99
CLN3-223ENST00000566472 FBLN2P98095 1184 aa8.85□□□□□ -0.99
CLN3-223ENST00000566472 PTPRGP23470 1445 aa8.85□□□□□ -0.99
CLN3-223ENST00000566472 KDM5DQ9BY66 1539 aa8.85□□□□□ -0.99
CLN3-223ENST00000566472 PZPP20742 1482 aa8.84□□□□□ -0.99
CLN3-223ENST00000566472 TEX14Q8IWB6 1497 aa8.84□□□□□ -0.99
CLN3-223ENST00000566472 CDC42BPAQ5VT25 1732 aa8.83□□□□□ -1
CLN3-223ENST00000566472 ZNF644Q9H582 1327 aaPredicted RBP8.82□□□□□ -1
CLN3-223ENST00000566472 KIAA1107Q9UPP5 1409 aa8.82□□□□□ -1
CLN3-223ENST00000566472 DDX10Q13206 875 aaKnown RBP8.82□□□□□ -1
CLN3-223ENST00000566472 C9orf84Q5VXU9 1444 aa8.81□□□□□ -1
CLN3-223ENST00000566472 ANKRD50Q9ULJ7 1429 aa8.81□□□□□ -1
CLN3-223ENST00000566472 PREX2Q70Z35 1606 aa8.81□□□□□ -1
CLN3-223ENST00000566472 CHD1O14646 1710 aa8.81□□□□□ -1
CLN3-223ENST00000566472 ANP32CO43423 234 aa8.81□□□□□ -1
CLN3-223ENST00000566472 ABCC2Q92887 1545 aa8.8□□□□□ -1
CLN3-223ENST00000566472 RSPH4AQ5TD94 716 aa8.8□□□□□ -1
CLN3-223ENST00000566472 CCDC141Q6ZP82 1450 aa8.8□□□□□ -1
CLN3-223ENST00000566472 PLEKHH2Q8IVE3 1493 aa8.8□□□□□ -1
CLN3-223ENST00000566472 MBD5Q9P267 1494 aa8.8□□□□□ -1
CLN3-223ENST00000566472 MAST1Q9Y2H9 1570 aa8.8□□□□□ -1
CLN3-223ENST00000566472 EIF4G2P78344 907 aaKnown RBP eCLIP8.79□□□□□ -1
CLN3-223ENST00000566472 SLC4A1APQ9BWU0 796 aaKnown RBP8.79□□□□□ -1
CLN3-223ENST00000566472 UHRF1BP1LA0JNW5 1464 aa8.78□□□□□ -1
CLN3-223ENST00000566472 L3MBTL2Q969R5 705 aa8.78□□□□□ -1
CLN3-223ENST00000566472 CLASP1Q7Z460 1538 aa8.78□□□□□ -1
CLN3-223ENST00000566472 ARHGEF12Q9NZN5 1544 aa8.78□□□□□ -1
CLN3-223ENST00000566472 SAMD9LQ8IVG5 1584 aa8.78□□□□□ -1
CLN3-223ENST00000566472 HSPA5P11021 654 aaKnown RBP8.77□□□□□ -1.01
CLN3-223ENST00000566472 CNTLNQ9NXG0 1405 aa8.77□□□□□ -1.01
CLN3-223ENST00000566472 TSPY4P0CV99 314 aa8.76□□□□□ -1.01
CLN3-223ENST00000566472 TSPY10P0CW01 314 aa8.76□□□□□ -1.01
CLN3-223ENST00000566472 ZNF777Q9ULD5 760 aaPredicted RBP8.76□□□□□ -1.01
CLN3-223ENST00000566472 UHRF1BP1Q6BDS2 1440 aa8.76□□□□□ -1.01
CLN3-223ENST00000566472 KIF15Q9NS87 1388 aa8.75□□□□□ -1.01
CLN3-223ENST00000566472 PLXNC1O60486 1568 aa8.75□□□□□ -1.01
CLN3-223ENST00000566472 SPATA31E1Q6ZUB1 1445 aa8.75□□□□□ -1.01
CLN3-223ENST00000566472 CCDC7Q96M83 1385 aa8.74□□□□□ -1.01
CLN3-223ENST00000566472 WASHC2AQ641Q2 1341 aa8.74□□□□□ -1.01
CLN3-223ENST00000566472 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.74□□□□□ -1.01
CLN3-223ENST00000566472 UNC13BO14795 1591 aa8.73□□□□□ -1.01
CLN3-223ENST00000566472 RALGAPBQ86X10 1494 aa8.73□□□□□ -1.01
CLN3-223ENST00000566472 CDC42BPBQ9Y5S2 1711 aa8.73□□□□□ -1.01
CLN3-223ENST00000566472 ARAP3Q8WWN8 1544 aa8.73□□□□□ -1.01
CLN3-223ENST00000566472 ARID4BQ4LE39 1312 aaPredicted RBP8.73□□□□□ -1.01
CLN3-223ENST00000566472 TTC37Q6PGP7 1564 aa8.73□□□□□ -1.01
CLN3-223ENST00000566472 NUP155O75694 1391 aa8.73□□□□□ -1.01
CLN3-223ENST00000566472 POLR1AO95602 1720 aaPredicted RBP8.72□□□□□ -1.01
CLN3-223ENST00000566472 ARHGAP5Q13017 1502 aa8.72□□□□□ -1.01
CLN3-223ENST00000566472 PKD2Q13563 968 aa8.72□□□□□ -1.01
CLN3-223ENST00000566472 FOXD1Q16676 465 aa8.72□□□□□ -1.01
CLN3-223ENST00000566472 NBPF8Q3BBV2 869 aa8.72□□□□□ -1.01
CLN3-223ENST00000566472 HIRIP3Q9BW71 556 aaPredicted RBP8.72□□□□□ -1.01
CLN3-223ENST00000566472 MYO5CQ9NQX4 1742 aa8.71□□□□□ -1.01
CLN3-223ENST00000566472 SYCP2Q9BX26 1530 aa8.71□□□□□ -1.01
CLN3-223ENST00000566472 MAGI2Q86UL8 1455 aa8.7□□□□□ -1.02
CLN3-223ENST00000566472 DUOX2Q9NRD8 1548 aa8.7□□□□□ -1.02
CLN3-223ENST00000566472 FAM135AQ9P2D6 1515 aa8.7□□□□□ -1.02
CLN3-223ENST00000566472 ERCC6L2Q5T890 1561 aa8.7□□□□□ -1.02
CLN3-223ENST00000566472 KCNH8Q96L42 1107 aa8.7□□□□□ -1.02
CLN3-223ENST00000566472 SUPT16HQ9Y5B9 1047 aaKnown RBP8.7□□□□□ -1.02
CLN3-223ENST00000566472 PLCH2O75038 1416 aa8.7□□□□□ -1.02
CLN3-223ENST00000566472 ERBINQ96RT1 1412 aa8.7□□□□□ -1.02
CLN3-223ENST00000566472 ZCCHC11Q5TAX3 1644 aaKnown RBP8.69□□□□□ -1.02
CLN3-223ENST00000566472 HNRNPMP52272 730 aaKnown RBP eCLIP8.69□□□□□ -1.02
CLN3-223ENST00000566472 ROCK2O75116 1388 aaKnown RBP8.69□□□□□ -1.02
CLN3-223ENST00000566472 ABCC1P33527 1531 aa8.69□□□□□ -1.02
CLN3-223ENST00000566472 KDM5CP41229 1560 aa8.69□□□□□ -1.02
CLN3-223ENST00000566472 IQGAP3Q86VI3 1631 aa8.69□□□□□ -1.02
CLN3-223ENST00000566472 USP47Q96K76 1375 aa8.68□□□□□ -1.02
CLN3-223ENST00000566472 ATP10AO60312 1499 aa8.68□□□□□ -1.02
CLN3-223ENST00000566472 KIF7Q2M1P5 1343 aa8.67□□□□□ -1.02
CLN3-223ENST00000566472 RTEL1-TNFRSF6BF6WH68 1400 aa8.66□□□□□ -1.02
CLN3-223ENST00000566472 CCDC144AA2RUR9 1427 aa8.65□□□□□ -1.02
CLN3-223ENST00000566472 EFCAB2Q5VUJ9 269 aa8.65□□□□□ -1.02
CLN3-223ENST00000566472 LAMC1P11047 1609 aa8.65□□□□□ -1.03
CLN3-223ENST00000566472 C11orf95C9JLR9 678 aaPredicted RBP8.64□□□□□ -1.03
CLN3-223ENST00000566472 PRKRIP1Q9H875 184 aaPredicted RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms