RNA–Protein interactions for RNA: ENST00000566370.1

LINC00563-201, long intergenic non-protein coding RNA 563, humanhuman

BASIC

Gene LINC00563, Length 1,400 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00563-201ENST00000566370 CHIC2Q9UKJ5 165 aa19.12■□□□□ 0.65
LINC00563-201ENST00000566370 PRG4Q92954 1404 aaPredicted RBP19.12■□□□□ 0.65
LINC00563-201ENST00000566370 TRIM52Q96A61 297 aa19.11■□□□□ 0.65
LINC00563-201ENST00000566370 CFDP1Q9UEE9 299 aaPredicted RBP19.11■□□□□ 0.65
LINC00563-201ENST00000566370 CAMSAP2Q08AD1 1489 aa19.11■□□□□ 0.65
LINC00563-201ENST00000566370 PTPRGP23470 1445 aa19.09■□□□□ 0.65
LINC00563-201ENST00000566370 PPP1R15AO75807 674 aaPredicted RBP19.08■□□□□ 0.65
LINC00563-201ENST00000566370 ABCC5O15440 1437 aa19.08■□□□□ 0.64
LINC00563-201ENST00000566370 CROCC2H7BZ55 1655 aa19.08■□□□□ 0.64
LINC00563-201ENST00000566370 GPATCH8Q9UKJ3 1502 aaKnown RBP19.07■□□□□ 0.64
LINC00563-201ENST00000566370 SHROOM2Q13796 1616 aa19.07■□□□□ 0.64
LINC00563-201ENST00000566370 ATP10BO94823 1461 aa19.04■□□□□ 0.64
LINC00563-201ENST00000566370 ADGRL2O95490 1459 aa19.03■□□□□ 0.64
LINC00563-201ENST00000566370 CDC42BPAQ5VT25 1732 aa19.02■□□□□ 0.64
LINC00563-201ENST00000566370 ANKRD30AQ9BXX3 1397 aa19.02■□□□□ 0.63
LINC00563-201ENST00000566370 SHANK2Q9UPX8 1470 aa19.01■□□□□ 0.63
LINC00563-201ENST00000566370 ABCC10Q5T3U5 1492 aa18.99■□□□□ 0.63
LINC00563-201ENST00000566370 MPHOSPH9Q99550 1183 aa18.99■□□□□ 0.63
LINC00563-201ENST00000566370 KDM6BO15054 1643 aa18.98■□□□□ 0.63
LINC00563-201ENST00000566370 ZNF777Q9ULD5 760 aaPredicted RBP18.98■□□□□ 0.63
LINC00563-201ENST00000566370 YTHDC1Q96MU7 727 aaKnown RBP18.97■□□□□ 0.63
LINC00563-201ENST00000566370 SCAF1Q9H7N4 1312 aaKnown RBP18.97■□□□□ 0.63
LINC00563-201ENST00000566370 ZNF644Q9H582 1327 aaPredicted RBP18.96■□□□□ 0.63
LINC00563-201ENST00000566370 ARHGEF5Q12774 1597 aa18.95■□□□□ 0.62
LINC00563-201ENST00000566370 NCOA1Q15788 1441 aa18.94■□□□□ 0.62
LINC00563-201ENST00000566370 PREX2Q70Z35 1606 aa18.93■□□□□ 0.62
LINC00563-201ENST00000566370 ABCC2Q92887 1545 aa18.93■□□□□ 0.62
LINC00563-201ENST00000566370 TSPY4P0CV99 314 aa18.92■□□□□ 0.62
LINC00563-201ENST00000566370 TSPY10P0CW01 314 aa18.92■□□□□ 0.62
LINC00563-201ENST00000566370 RSPH4AQ5TD94 716 aa18.92■□□□□ 0.62
LINC00563-201ENST00000566370 SLC4A1APQ9BWU0 796 aaKnown RBP18.91■□□□□ 0.62
LINC00563-201ENST00000566370 C9orf84Q5VXU9 1444 aa18.89■□□□□ 0.62
LINC00563-201ENST00000566370 CLASP1Q7Z460 1538 aa18.89■□□□□ 0.61
LINC00563-201ENST00000566370 PLEKHH2Q8IVE3 1493 aa18.89■□□□□ 0.61
LINC00563-201ENST00000566370 RPRD2Q5VT52 1461 aaKnown RBP18.88■□□□□ 0.61
LINC00563-201ENST00000566370 DENND4BO75064 1496 aaPredicted RBP18.87■□□□□ 0.61
LINC00563-201ENST00000566370 ANKRD50Q9ULJ7 1429 aa18.87■□□□□ 0.61
LINC00563-201ENST00000566370 CCDC141Q6ZP82 1450 aa18.86■□□□□ 0.61
LINC00563-201ENST00000566370 ANKRD30BQ9BXX2 1392 aa18.86■□□□□ 0.61
LINC00563-201ENST00000566370 MYO5CQ9NQX4 1742 aa18.85■□□□□ 0.61
LINC00563-201ENST00000566370 UHRF1BP1LA0JNW5 1464 aa18.85■□□□□ 0.61
LINC00563-201ENST00000566370 KDM5BQ9UGL1 1544 aa18.84■□□□□ 0.61
LINC00563-201ENST00000566370 CDC42BPBQ9Y5S2 1711 aa18.83■□□□□ 0.61
LINC00563-201ENST00000566370 GTF3C3Q9Y5Q9 886 aa18.83■□□□□ 0.61
LINC00563-201ENST00000566370 KIAA1107Q9UPP5 1409 aa18.83■□□□□ 0.6
LINC00563-201ENST00000566370 DDX10Q13206 875 aaKnown RBP18.83■□□□□ 0.6
LINC00563-201ENST00000566370 PZPP20742 1482 aa18.83■□□□□ 0.6
LINC00563-201ENST00000566370 ARHGAP5Q13017 1502 aa18.82■□□□□ 0.6
LINC00563-201ENST00000566370 ANP32CO43423 234 aa18.82■□□□□ 0.6
LINC00563-201ENST00000566370 KDM5DQ9BY66 1539 aa18.81■□□□□ 0.6
LINC00563-201ENST00000566370 SAMD9LQ8IVG5 1584 aa18.81■□□□□ 0.6
LINC00563-201ENST00000566370 MAST1Q9Y2H9 1570 aa18.8■□□□□ 0.6
LINC00563-201ENST00000566370 EIF4G2P78344 907 aaKnown RBP eCLIP18.8■□□□□ 0.6
LINC00563-201ENST00000566370 KIF15Q9NS87 1388 aa18.78■□□□□ 0.6
LINC00563-201ENST00000566370 ZCCHC11Q5TAX3 1644 aaKnown RBP18.77■□□□□ 0.6
LINC00563-201ENST00000566370 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.77■□□□□ 0.6
LINC00563-201ENST00000566370 TTC37Q6PGP7 1564 aa18.77■□□□□ 0.59
LINC00563-201ENST00000566370 TEX14Q8IWB6 1497 aa18.76■□□□□ 0.59
LINC00563-201ENST00000566370 MBD5Q9P267 1494 aa18.76■□□□□ 0.59
LINC00563-201ENST00000566370 L3MBTL2Q969R5 705 aa18.76■□□□□ 0.59
LINC00563-201ENST00000566370 CCER2I3L3R5 266 aa18.75■□□□□ 0.59
LINC00563-201ENST00000566370 ERCC6L2Q5T890 1561 aa18.75■□□□□ 0.59
LINC00563-201ENST00000566370 NUP155O75694 1391 aa18.74■□□□□ 0.59
LINC00563-201ENST00000566370 SYCP2Q9BX26 1530 aa18.73■□□□□ 0.59
LINC00563-201ENST00000566370 PLXNC1O60486 1568 aa18.73■□□□□ 0.59
LINC00563-201ENST00000566370 HNRNPMP52272 730 aaKnown RBP eCLIP18.73■□□□□ 0.59
LINC00563-201ENST00000566370 FOXD1Q16676 465 aa18.73■□□□□ 0.59
LINC00563-201ENST00000566370 PKD2Q13563 968 aa18.72■□□□□ 0.59
LINC00563-201ENST00000566370 HSPA5P11021 654 aaKnown RBP18.71■□□□□ 0.59
LINC00563-201ENST00000566370 ARAP3Q8WWN8 1544 aa18.69■□□□□ 0.58
LINC00563-201ENST00000566370 EFCAB2Q5VUJ9 269 aa18.69■□□□□ 0.58
LINC00563-201ENST00000566370 HIRIP3Q9BW71 556 aaPredicted RBP18.69■□□□□ 0.58
LINC00563-201ENST00000566370 ARHGEF12Q9NZN5 1544 aa18.69■□□□□ 0.58
LINC00563-201ENST00000566370 PLCH2O75038 1416 aa18.68■□□□□ 0.58
LINC00563-201ENST00000566370 UNC13BO14795 1591 aa18.67■□□□□ 0.58
LINC00563-201ENST00000566370 POLR1AO95602 1720 aaPredicted RBP18.67■□□□□ 0.58
LINC00563-201ENST00000566370 DUOX2Q9NRD8 1548 aa18.66■□□□□ 0.58
LINC00563-201ENST00000566370 KCNH8Q96L42 1107 aa18.64■□□□□ 0.57
LINC00563-201ENST00000566370 FAM135AQ9P2D6 1515 aa18.63■□□□□ 0.57
LINC00563-201ENST00000566370 ERBINQ96RT1 1412 aa18.63■□□□□ 0.57
LINC00563-201ENST00000566370 ABCC1P33527 1531 aa18.62■□□□□ 0.57
LINC00563-201ENST00000566370 CNTLNQ9NXG0 1405 aa18.6■□□□□ 0.57
LINC00563-201ENST00000566370 IQGAP3Q86VI3 1631 aa18.6■□□□□ 0.57
LINC00563-201ENST00000566370 WDR7Q9Y4E6 1490 aa18.59■□□□□ 0.57
LINC00563-201ENST00000566370 UHRF1BP1Q6BDS2 1440 aa18.59■□□□□ 0.57
LINC00563-201ENST00000566370 PELP1Q8IZL8 1130 aaKnown RBP18.58■□□□□ 0.57
LINC00563-201ENST00000566370 CCDC7Q96M83 1385 aa18.58■□□□□ 0.56
LINC00563-201ENST00000566370 NBPF8Q3BBV2 869 aa18.57■□□□□ 0.56
LINC00563-201ENST00000566370 ARID4BQ4LE39 1312 aaPredicted RBP18.56■□□□□ 0.56
LINC00563-201ENST00000566370 WASHC2AQ641Q2 1341 aa18.56■□□□□ 0.56
LINC00563-201ENST00000566370 RALGAPBQ86X10 1494 aa18.56■□□□□ 0.56
LINC00563-201ENST00000566370 CCDC144AA2RUR9 1427 aa18.56■□□□□ 0.56
LINC00563-201ENST00000566370 RTEL1-TNFRSF6BF6WH68 1400 aa18.56■□□□□ 0.56
LINC00563-201ENST00000566370 ABCA9Q8IUA7 1624 aa18.53■□□□□ 0.56
LINC00563-201ENST00000566370 SPATA31E1Q6ZUB1 1445 aa18.52■□□□□ 0.56
LINC00563-201ENST00000566370 MAGI2Q86UL8 1455 aa18.52■□□□□ 0.56
LINC00563-201ENST00000566370 ZNF326Q5BKZ1 582 aaKnown RBP18.51■□□□□ 0.55
LINC00563-201ENST00000566370 SPAG9O60271 1321 aaKnown RBP18.51■□□□□ 0.55
LINC00563-201ENST00000566370 USP47Q96K76 1375 aa18.51■□□□□ 0.55
LINC00563-201ENST00000566370 NPM1P06748 294 aaKnown RBP eCLIP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms