RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-218ENST00000566029 PLCB2Q00722 1185 aa3.83□□□□□ -1.8
CHD9-218ENST00000566029 FGD1P98174 961 aa3.83□□□□□ -1.8
CHD9-218ENST00000566029 CLCN1P35523 988 aa3.82□□□□□ -1.8
CHD9-218ENST00000566029 TOP2AP11388 1531 aaKnown RBP3.82□□□□□ -1.8
CHD9-218ENST00000566029 EXOC6Q8TAG9 804 aa3.82□□□□□ -1.8
CHD9-218ENST00000566029 PNNQ9H307 717 aaKnown RBP3.82□□□□□ -1.8
CHD9-218ENST00000566029 PRDM2Q13029 1718 aa3.82□□□□□ -1.8
CHD9-218ENST00000566029 BAZ1AQ9NRL2 1556 aaPredicted RBP3.82□□□□□ -1.8
CHD9-218ENST00000566029 PRXQ9BXM0 1461 aa3.82□□□□□ -1.8
CHD9-218ENST00000566029 DNTTIP2Q5QJE6 756 aaKnown RBP3.82□□□□□ -1.8
CHD9-218ENST00000566029 FRAT2O75474 233 aaPredicted RBP3.81□□□□□ -1.8
CHD9-218ENST00000566029 C14orf37Q86TY3 774 aa3.81□□□□□ -1.8
CHD9-218ENST00000566029 CCDC7Q96M83 1385 aa3.81□□□□□ -1.8
CHD9-218ENST00000566029 AKNAQ7Z591 1439 aa3.81□□□□□ -1.8
CHD9-218ENST00000566029 TNNT2P45379 298 aaPredicted RBP3.81□□□□□ -1.8
CHD9-218ENST00000566029 RAPGEF2Q9Y4G8 1499 aa3.81□□□□□ -1.8
CHD9-218ENST00000566029 SP100P23497 879 aaPredicted RBP3.81□□□□□ -1.8
CHD9-218ENST00000566029 PHLDB1Q86UU1 1377 aa3.81□□□□□ -1.8
CHD9-218ENST00000566029 TPM2P07951 284 aa3.81□□□□□ -1.8
CHD9-218ENST00000566029 TONSLQ96HA7 1378 aa3.8□□□□□ -1.8
CHD9-218ENST00000566029 L1TD1Q5T7N2 865 aaKnown RBP3.8□□□□□ -1.8
CHD9-218ENST00000566029 MRS2Q9HD23 443 aa3.8□□□□□ -1.8
CHD9-218ENST00000566029 FSD2A1L4K1 749 aa3.8□□□□□ -1.8
CHD9-218ENST00000566029 ERCC6Q03468 1493 aa3.8□□□□□ -1.8
CHD9-218ENST00000566029 POGKQ9P215 609 aa3.8□□□□□ -1.8
CHD9-218ENST00000566029 AQRO60306 1485 aaKnown RBP eCLIP3.8□□□□□ -1.85e-7■■□□□ 14.2
CHD9-218ENST00000566029 HSP90AA2PQ14568 343 aaPredicted RBP3.79□□□□□ -1.8
CHD9-218ENST00000566029 RIPK4P57078 832 aa3.79□□□□□ -1.8
CHD9-218ENST00000566029 DHX29Q7Z478 1369 aaKnown RBP3.79□□□□□ -1.8
CHD9-218ENST00000566029 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.79□□□□□ -1.83e-10■■■■■ 27.7
CHD9-218ENST00000566029 NCOA1Q15788 1441 aa3.79□□□□□ -1.8
CHD9-218ENST00000566029 MYOM3Q5VTT5 1437 aa3.79□□□□□ -1.8
CHD9-218ENST00000566029 BCL11BQ9C0K0 894 aaPredicted RBP3.79□□□□□ -1.8
CHD9-218ENST00000566029 RRP1P56182 461 aaKnown RBP3.79□□□□□ -1.8
CHD9-218ENST00000566029 PDCL3Q9H2J4 239 aa3.79□□□□□ -1.8
CHD9-218ENST00000566029 LRPPRCP42704 1394 aaKnown RBP3.79□□□□□ -1.8
CHD9-218ENST00000566029 PAXIP1Q6ZW49 1069 aaPredicted RBP3.79□□□□□ -1.8
CHD9-218ENST00000566029 MAP3K1Q13233 1512 aa3.78□□□□□ -1.8
CHD9-218ENST00000566029 APPP05067 770 aa3.78□□□□□ -1.8
CHD9-218ENST00000566029 SLC4A3P48751 1232 aa3.78□□□□□ -1.8
CHD9-218ENST00000566029 CLSTN1O94985 981 aa3.78□□□□□ -1.8
CHD9-218ENST00000566029 TERF1P54274 439 aa3.78□□□□□ -1.8
CHD9-218ENST00000566029 FAM9BQ8IZU0 186 aa3.78□□□□□ -1.8
CHD9-218ENST00000566029 ERICH3Q5RHP9 1530 aa3.78□□□□□ -1.8
CHD9-218ENST00000566029 CALRP27797 417 aaKnown RBP3.78□□□□□ -1.8
CHD9-218ENST00000566029 XRCC6P12956 609 aaKnown RBP eCLIP3.78□□□□□ -1.83e-6■■■□□ 16.1
CHD9-218ENST00000566029 CHMP4AQ9BY43 222 aa3.77□□□□□ -1.81
CHD9-218ENST00000566029 PTMAP06454 111 aaKnown RBP3.77□□□□□ -1.81
CHD9-218ENST00000566029 CCDC9Q9Y3X0 531 aaKnown RBP3.77□□□□□ -1.81
CHD9-218ENST00000566029 UACAQ9BZF9 1416 aa3.77□□□□□ -1.81
CHD9-218ENST00000566029 PEG3Q9GZU2 1588 aa3.77□□□□□ -1.81
CHD9-218ENST00000566029 SCRIBQ14160 1630 aa3.77□□□□□ -1.81
CHD9-218ENST00000566029 EIF3DO15371 548 aaKnown RBP eCLIP3.77□□□□□ -1.819e-7■□□□□ 9.6
CHD9-218ENST00000566029 WWC1Q8IX03 1113 aa3.77□□□□□ -1.81
CHD9-218ENST00000566029 PLCD4Q9BRC7 762 aa3.77□□□□□ -1.81
CHD9-218ENST00000566029 USP19O94966 1318 aa3.77□□□□□ -1.81
CHD9-218ENST00000566029 KDM2BQ8NHM5 1336 aa3.77□□□□□ -1.81
CHD9-218ENST00000566029 OFD1O75665 1012 aa3.77□□□□□ -1.81
CHD9-218ENST00000566029 PDIA4P13667 645 aaKnown RBP3.77□□□□□ -1.81
CHD9-218ENST00000566029 UTP14CQ5TAP6 766 aaKnown RBP3.77□□□□□ -1.81
CHD9-218ENST00000566029 PRM3Q9NNZ6 103 aa3.77□□□□□ -1.81
CHD9-218ENST00000566029 ERBB4Q15303 1308 aa3.76□□□□□ -1.81
CHD9-218ENST00000566029 KIF21AQ7Z4S6 1674 aa3.76□□□□□ -1.81
CHD9-218ENST00000566029 INSRP06213 1382 aa3.76□□□□□ -1.81
CHD9-218ENST00000566029 DHX37Q8IY37 1157 aaKnown RBP3.76□□□□□ -1.81
CHD9-218ENST00000566029 SMAP1Q8IYB5 467 aaPredicted RBP3.76□□□□□ -1.81
CHD9-218ENST00000566029 KIF7Q2M1P5 1343 aa3.76□□□□□ -1.81
CHD9-218ENST00000566029 ARHGAP35Q9NRY4 1499 aa3.76□□□□□ -1.81
CHD9-218ENST00000566029 PNISRQ8TF01 805 aaKnown RBP3.76□□□□□ -1.81
CHD9-218ENST00000566029 EIF4G2P78344 907 aaKnown RBP eCLIP3.75□□□□□ -1.81
CHD9-218ENST00000566029 PDE3BQ13370 1112 aa3.75□□□□□ -1.81
CHD9-218ENST00000566029 LRRC9Q6ZRR7 1453 aa3.75□□□□□ -1.81
CHD9-218ENST00000566029 C8orf34Q49A92 452 aa3.75□□□□□ -1.81
CHD9-218ENST00000566029 HFM1A2PYH4 1435 aa3.75□□□□□ -1.81
CHD9-218ENST00000566029 FAM161AQ3B820 660 aa3.75□□□□□ -1.81
CHD9-218ENST00000566029 SKAP1Q86WV1 359 aa3.75□□□□□ -1.81
CHD9-218ENST00000566029 STAC3Q96MF2 364 aa3.75□□□□□ -1.81
CHD9-218ENST00000566029 MAPK8IP2Q13387 824 aaPredicted RBP3.75□□□□□ -1.81
CHD9-218ENST00000566029 PTPRKQ15262 1439 aa3.74□□□□□ -1.81
CHD9-218ENST00000566029 SPRYD3Q8NCJ5 442 aa3.74□□□□□ -1.81
CHD9-218ENST00000566029 NAP1L2Q9ULW6 460 aaPredicted RBP3.74□□□□□ -1.81
CHD9-218ENST00000566029 GOLGA6L3A6NEY3 463 aa3.74□□□□□ -1.81
CHD9-218ENST00000566029 ESPNB1AK53 854 aa3.74□□□□□ -1.81
CHD9-218ENST00000566029 RGS3P49796 1198 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 MAP7D2Q96T17 732 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 TRIM44Q96DX7 344 aaPredicted RBP3.73□□□□□ -1.81
CHD9-218ENST00000566029 SPATA31E1Q6ZUB1 1445 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 MRE11P49959 708 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 IPO4Q8TEX9 1081 aaKnown RBP3.73□□□□□ -1.81
CHD9-218ENST00000566029 RCAN3Q9UKA8 241 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 CFAP44Q96MT7 982 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 CRBNQ96SW2 442 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 ANTXR1Q9H6X2 564 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 FMN1Q68DA7 1419 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 SYNJ1O43426 1573 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 CCDC18Q5T9S5 1454 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 BRD4O60885 1362 aaPredicted RBP3.73□□□□□ -1.81
CHD9-218ENST00000566029 ROCK2O75116 1388 aaKnown RBP3.73□□□□□ -1.81
CHD9-218ENST00000566029 KLHL34Q8N239 644 aa3.73□□□□□ -1.81
CHD9-218ENST00000566029 NBPF8Q3BBV2 869 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms