RNA–Protein interactions for RNA: ENST00000560328.1

NEO1-208, Transcript of neogenin 1, human

TSL 1 (best)

Gene NEO1, Length 5,895 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEO1-208	ENST00000560328	ROCK2	O75116	1388 aa	Known RBP	12.19	□□□□□ -0.46
NEO1-208	ENST00000560328	L3MBTL2	Q969R5	705 aa		12.18	□□□□□ -0.46
NEO1-208	ENST00000560328	RAD54L2	Q9Y4B4	1467 aa		12.18	□□□□□ -0.46
NEO1-208	ENST00000560328	MORC1	Q86VD1	984 aa		12.18	□□□□□ -0.46
NEO1-208	ENST00000560328	SPAG9	O60271	1321 aa	Known RBP	12.17	□□□□□ -0.46
NEO1-208	ENST00000560328	FRAT1	Q92837	279 aa	Predicted RBP	12.17	□□□□□ -0.46
NEO1-208	ENST00000560328	GAPVD1	Q14C86	1478 aa		12.17	□□□□□ -0.46
NEO1-208	ENST00000560328	PPP4R2	Q9NY27	417 aa		12.17	□□□□□ -0.46
NEO1-208	ENST00000560328	PNN	Q9H307	717 aa	Known RBP	12.15	□□□□□ -0.46
NEO1-208	ENST00000560328	PTPRG	P23470	1445 aa		12.15	□□□□□ -0.47
NEO1-208	ENST00000560328	KTN1	Q86UP2	1357 aa	Known RBP	12.14	□□□□□ -0.47
NEO1-208	ENST00000560328	SOX12	O15370	315 aa		12.13	□□□□□ -0.47
NEO1-208	ENST00000560328	DDRGK1	Q96HY6	314 aa		12.12	□□□□□ -0.47
NEO1-208	ENST00000560328	ARX	Q96QS3	562 aa		12.12	□□□□□ -0.47
NEO1-208	ENST00000560328	DHX57	Q6P158	1386 aa	Known RBP	12.12	□□□□□ -0.47
NEO1-208	ENST00000560328	BECN1	Q14457	450 aa		12.12	□□□□□ -0.47
NEO1-208	ENST00000560328	WASHC2C	Q9Y4E1	1318 aa		12.11	□□□□□ -0.47
NEO1-208	ENST00000560328	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	12.11	□□□□□ -0.47
NEO1-208	ENST00000560328	B4GALNT3	Q6L9W6	998 aa		12.1	□□□□□ -0.47
NEO1-208	ENST00000560328	RALBP1	Q15311	655 aa		12.09	□□□□□ -0.47
NEO1-208	ENST00000560328	RGS3	P49796	1198 aa		12.09	□□□□□ -0.47
NEO1-208	ENST00000560328	MS4A1	P11836	297 aa		12.08	□□□□□ -0.48
NEO1-208	ENST00000560328	AQR	O60306	1485 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
NEO1-208	ENST00000560328	NUTM2D	Q5VT03	806 aa	Predicted RBP	12.08	□□□□□ -0.48
NEO1-208	ENST00000560328	EIF3A	Q14152	1382 aa	Known RBP	12.07	□□□□□ -0.48
NEO1-208	ENST00000560328	CHMP4B	Q9H444	224 aa	Known RBP	12.06	□□□□□ -0.48
NEO1-208	ENST00000560328	CASC1	Q6TDU7	716 aa		12.06	□□□□□ -0.48
NEO1-208	ENST00000560328	OSCAR	Q8IYS5	282 aa		12.04	□□□□□ -0.48
NEO1-208	ENST00000560328	KIF21B	O75037	1637 aa		12.04	□□□□□ -0.48
NEO1-208	ENST00000560328	CFTR	P13569	1480 aa		12.04	□□□□□ -0.48
NEO1-208	ENST00000560328	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.04	□□□□□ -0.48
NEO1-208	ENST00000560328	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.04	□□□□□ -0.48
NEO1-208	ENST00000560328	CCDC144A	A2RUR9	1427 aa		12.04	□□□□□ -0.48
NEO1-208	ENST00000560328	CYB5RL	Q6IPT4	315 aa		12.03	□□□□□ -0.48
NEO1-208	ENST00000560328	ST20-MTHFS	A0A0A6YYL1	179 aa		12.02	□□□□□ -0.49
NEO1-208	ENST00000560328	PAK3	O75914	559 aa	Predicted RBP	12.02	□□□□□ -0.49
NEO1-208	ENST00000560328	RTF1	Q92541	710 aa	Known RBP	12.01	□□□□□ -0.49
NEO1-208	ENST00000560328	SYNJ1	O43426	1573 aa		12.01	□□□□□ -0.49
NEO1-208	ENST00000560328	ZNF644	Q9H582	1327 aa	Predicted RBP	12.01	□□□□□ -0.49
NEO1-208	ENST00000560328	TRAK1	Q9UPV9	953 aa		12.01	□□□□□ -0.49
NEO1-208	ENST00000560328	EIF5B	O60841	1220 aa	Known RBP	12	□□□□□ -0.49
NEO1-208	ENST00000560328	FGD6	Q6ZV73	1430 aa		12	□□□□□ -0.49
NEO1-208	ENST00000560328	TERF2IP	Q9NYB0	399 aa		12	□□□□□ -0.49
NEO1-208	ENST00000560328	MYOM3	Q5VTT5	1437 aa		12	□□□□□ -0.49
NEO1-208	ENST00000560328	NES	P48681	1621 aa		12	□□□□□ -0.49
NEO1-208	ENST00000560328	PHLDB1	Q86UU1	1377 aa		11.99	□□□□□ -0.49
NEO1-208	ENST00000560328	RCAN3	Q9UKA8	241 aa		11.99	□□□□□ -0.49
NEO1-208	ENST00000560328	EID1	Q9Y6B2	187 aa		11.99	□□□□□ -0.49
NEO1-208	ENST00000560328	OS9	Q13438	667 aa	Predicted RBP	11.99	□□□□□ -0.49
NEO1-208	ENST00000560328	NLRP13	Q86W25	1043 aa		11.98	□□□□□ -0.49
NEO1-208	ENST00000560328	LRRC9	Q6ZRR7	1453 aa		11.98	□□□□□ -0.49
NEO1-208	ENST00000560328	GOLGA6L22	H0YM25	854 aa		11.98	□□□□□ -0.49
NEO1-208	ENST00000560328	NCL	P19338	710 aa	Known RBP	11.98	□□□□□ -0.49
NEO1-208	ENST00000560328	GRIN2B	Q13224	1484 aa		11.98	□□□□□ -0.49
NEO1-208	ENST00000560328	CASKIN1	Q8WXD9	1431 aa		11.97	□□□□□ -0.49
NEO1-208	ENST00000560328	CUX1	P39880	1505 aa		11.96	□□□□□ -0.49
NEO1-208	ENST00000560328	ERICH3	Q5RHP9	1530 aa		11.96	□□□□□ -0.5
NEO1-208	ENST00000560328	PANK3	Q9H999	370 aa		11.96	□□□□□ -0.5
NEO1-208	ENST00000560328	CC2D2A	Q9P2K1	1620 aa		11.95	□□□□□ -0.5
NEO1-208	ENST00000560328	IPO8	O15397	1037 aa	Known RBP	11.95	□□□□□ -0.5
NEO1-208	ENST00000560328	CALD1	Q05682	793 aa	Known RBP	11.95	□□□□□ -0.5
NEO1-208	ENST00000560328	UACA	Q9BZF9	1416 aa		11.95	□□□□□ -0.5
NEO1-208	ENST00000560328	KIF15	Q9NS87	1388 aa		11.95	□□□□□ -0.5
NEO1-208	ENST00000560328	CCDC146	Q8IYE0	955 aa		11.94	□□□□□ -0.5
NEO1-208	ENST00000560328	ARAP1	Q96P48	1450 aa		11.94	□□□□□ -0.5
NEO1-208	ENST00000560328	PRDM2	Q13029	1718 aa		11.94	□□□□□ -0.5
NEO1-208	ENST00000560328	HMGXB3	Q12766	1538 aa		11.94	□□□□□ -0.5
NEO1-208	ENST00000560328	VGF	O15240	615 aa	Predicted RBP	11.94	□□□□□ -0.5
NEO1-208	ENST00000560328	ANP32E	Q9BTT0	268 aa		11.94	□□□□□ -0.5
NEO1-208	ENST00000560328	USP47	Q96K76	1375 aa		11.94	□□□□□ -0.5
NEO1-208	ENST00000560328	NCOA2	Q15596	1464 aa		11.93	□□□□□ -0.5
NEO1-208	ENST00000560328	ERICH6B	Q5W0A0	696 aa		11.93	□□□□□ -0.5
NEO1-208	ENST00000560328	GOLGA2	Q08379	1002 aa		11.93	□□□□□ -0.5
NEO1-208	ENST00000560328	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
NEO1-208	ENST00000560328	NGDN	Q8NEJ9	315 aa	Known RBP	11.93	□□□□□ -0.5
NEO1-208	ENST00000560328	NUTM2F	A1L443	756 aa		11.92	□□□□□ -0.5
NEO1-208	ENST00000560328	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.92	□□□□□ -0.5
NEO1-208	ENST00000560328	NPHP1	O15259	732 aa		11.92	□□□□□ -0.5
NEO1-208	ENST00000560328	MRC2	Q9UBG0	1479 aa		11.92	□□□□□ -0.5
NEO1-208	ENST00000560328	TOP2B	Q02880	1626 aa		11.91	□□□□□ -0.5
NEO1-208	ENST00000560328	CSB-PGBD3	P0DP91	1061 aa		11.91	□□□□□ -0.5
NEO1-208	ENST00000560328	NOP58	Q9Y2X3	529 aa	Known RBP	11.91	□□□□□ -0.5
NEO1-208	ENST00000560328	FYCO1	Q9BQS8	1478 aa		11.91	□□□□□ -0.5
NEO1-208	ENST00000560328	TOPBP1	Q92547	1522 aa		11.91	□□□□□ -0.5
NEO1-208	ENST00000560328	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.9	□□□□□ -0.5
NEO1-208	ENST00000560328	ITPRIP	Q8IWB1	547 aa		11.9	□□□□□ -0.5
NEO1-208	ENST00000560328	PRX	Q9BXM0	1461 aa		11.9	□□□□□ -0.5
NEO1-208	ENST00000560328	HSP90AB1	P08238	724 aa	Known RBP	11.89	□□□□□ -0.51
NEO1-208	ENST00000560328	PDE3B	Q13370	1112 aa		11.89	□□□□□ -0.51
NEO1-208	ENST00000560328	POLA1	P09884	1462 aa	Predicted RBP	11.89	□□□□□ -0.51
NEO1-208	ENST00000560328	TPRN	Q4KMQ1	711 aa		11.89	□□□□□ -0.51
NEO1-208	ENST00000560328	KCNJ4	P48050	445 aa		11.89	□□□□□ -0.51
NEO1-208	ENST00000560328	FAM69C	Q0P6D2	419 aa		11.88	□□□□□ -0.51
NEO1-208	ENST00000560328	IFT140	Q96RY7	1462 aa		11.88	□□□□□ -0.51
NEO1-208	ENST00000560328	APBB1	O00213	710 aa		11.88	□□□□□ -0.51
NEO1-208	ENST00000560328	ANKRD50	Q9ULJ7	1429 aa		11.88	□□□□□ -0.51
NEO1-208	ENST00000560328	EVC2	Q86UK5	1308 aa		11.88	□□□□□ -0.51
NEO1-208	ENST00000560328	PRG4	Q92954	1404 aa	Predicted RBP	11.88	□□□□□ -0.51
NEO1-208	ENST00000560328	RWDD1	Q9H446	243 aa	Predicted RBP	11.88	□□□□□ -0.51
NEO1-208	ENST00000560328	SMC4	Q9NTJ3	1288 aa		11.87	□□□□□ -0.51

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