RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 PHF23Q9BUL5 403 aaPredicted RBP23.46■■□□□ 1.35
TMEM260-215ENST00000557626 CFAP74Q9C0B2 1584 aa23.44■■□□□ 1.34
TMEM260-215ENST00000557626 MAGI2Q86UL8 1455 aa23.44■■□□□ 1.34
TMEM260-215ENST00000557626 FAM9AQ8IZU1 332 aaPredicted RBP23.39■■□□□ 1.33
TMEM260-215ENST00000557626 HECW1Q76N89 1606 aa23.38■■□□□ 1.33
TMEM260-215ENST00000557626 HSPA1LP34931 641 aa23.38■■□□□ 1.33
TMEM260-215ENST00000557626 NCOA1Q15788 1441 aa23.38■■□□□ 1.33
TMEM260-215ENST00000557626 ZNF335Q9H4Z2 1342 aaPredicted RBP23.33■■□□□ 1.33
TMEM260-215ENST00000557626 SCAF1Q9H7N4 1312 aaKnown RBP23.33■■□□□ 1.33
TMEM260-215ENST00000557626 C9orf84Q5VXU9 1444 aa23.33■■□□□ 1.33
TMEM260-215ENST00000557626 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.33■■□□□ 1.33
TMEM260-215ENST00000557626 HNRNPUL2Q1KMD3 747 aaKnown RBP23.33■■□□□ 1.33
TMEM260-215ENST00000557626 ATP10AO60312 1499 aa23.32■■□□□ 1.32
TMEM260-215ENST00000557626 C3P01024 1663 aa23.29■■□□□ 1.32
TMEM260-215ENST00000557626 PIP4K2BP78356 416 aa23.26■■□□□ 1.31
TMEM260-215ENST00000557626 CAMSAP1Q5T5Y3 1602 aa23.25■■□□□ 1.31
TMEM260-215ENST00000557626 RAPGEF6Q8TEU7 1601 aa23.24■■□□□ 1.31
TMEM260-215ENST00000557626 TRAPPC8Q9Y2L5 1435 aa23.23■■□□□ 1.31
TMEM260-215ENST00000557626 P3H3Q8IVL6 736 aa23.2■■□□□ 1.3
TMEM260-215ENST00000557626 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.19■■□□□ 1.3
TMEM260-215ENST00000557626 SCAPERQ9BY12 1400 aa23.19■■□□□ 1.3
TMEM260-215ENST00000557626 NCKAP5LQ9HCH0 1330 aa23.17■■□□□ 1.3
TMEM260-215ENST00000557626 TOM1O60784 492 aa23.16■■□□□ 1.3
TMEM260-215ENST00000557626 ESF1Q9H501 851 aaKnown RBP23.14■■□□□ 1.29
TMEM260-215ENST00000557626 NUP153P49790 1475 aaKnown RBP23.12■■□□□ 1.29
TMEM260-215ENST00000557626 PLEKHD1A6NEE1 506 aa23.12■■□□□ 1.29
TMEM260-215ENST00000557626 PKD2Q13563 968 aa23.07■■□□□ 1.28
TMEM260-215ENST00000557626 SUPT6HQ7KZ85 1726 aaKnown RBP23.05■■□□□ 1.28
TMEM260-215ENST00000557626 PLA2R1Q13018 1463 aa23.05■■□□□ 1.28
TMEM260-215ENST00000557626 REREQ9P2R6 1566 aa23.03■■□□□ 1.28
TMEM260-215ENST00000557626 PPP6R1Q9UPN7 881 aa23.03■■□□□ 1.28
TMEM260-215ENST00000557626 DIP2CQ9Y2E4 1556 aa23.02■■□□□ 1.28
TMEM260-215ENST00000557626 RGS17Q9UGC6 210 aaPredicted RBP23.02■■□□□ 1.28
TMEM260-215ENST00000557626 SAMD9Q5K651 1589 aa23.01■■□□□ 1.27
TMEM260-215ENST00000557626 NPATQ14207 1427 aa23.01■■□□□ 1.27
TMEM260-215ENST00000557626 CNTLNQ9NXG0 1405 aa23.01■■□□□ 1.27
TMEM260-215ENST00000557626 TCOF1Q13428 1488 aaKnown RBP23.01■■□□□ 1.27
TMEM260-215ENST00000557626 ZNF518AQ6AHZ1 1483 aa23.01■■□□□ 1.27
TMEM260-215ENST00000557626 AGLP35573 1532 aa23.01■■□□□ 1.27
TMEM260-215ENST00000557626 PLCH2O75038 1416 aa23■■□□□ 1.27
TMEM260-215ENST00000557626 CPS1P31327 1500 aa23■■□□□ 1.27
TMEM260-215ENST00000557626 MYT1LQ9UL68 1186 aa23■■□□□ 1.27
TMEM260-215ENST00000557626 ZNF142P52746 1687 aaPredicted RBP22.99■■□□□ 1.27
TMEM260-215ENST00000557626 KDM5CP41229 1560 aa22.97■■□□□ 1.27
TMEM260-215ENST00000557626 PTPRKQ15262 1439 aa22.97■■□□□ 1.27
TMEM260-215ENST00000557626 SENP3Q9H4L4 574 aaPredicted RBP22.96■■□□□ 1.27
TMEM260-215ENST00000557626 ABCA6Q8N139 1617 aa22.95■■□□□ 1.26
TMEM260-215ENST00000557626 MYO3AQ8NEV4 1616 aa22.94■■□□□ 1.26
TMEM260-215ENST00000557626 MROH2AA6NES4 1674 aa22.93■■□□□ 1.26
TMEM260-215ENST00000557626 EFCAB2Q5VUJ9 269 aa22.92■■□□□ 1.26
TMEM260-215ENST00000557626 CEP170BQ9Y4F5 1589 aaPredicted RBP22.92■■□□□ 1.26
TMEM260-215ENST00000557626 MYO5CQ9NQX4 1742 aa22.91■■□□□ 1.26
TMEM260-215ENST00000557626 ALKQ9UM73 1620 aa22.91■■□□□ 1.26
TMEM260-215ENST00000557626 AFAP1Q8N556 730 aa22.91■■□□□ 1.26
TMEM260-215ENST00000557626 PRXQ9BXM0 1461 aa22.9■■□□□ 1.26
TMEM260-215ENST00000557626 SHANK2Q9UPX8 1470 aa22.88■■□□□ 1.25
TMEM260-215ENST00000557626 SRCAPQ6ZRS2 3230 aa22.88■■□□□ 1.25
TMEM260-215ENST00000557626 SETD1AO15047 1707 aaKnown RBP22.87■■□□□ 1.25
TMEM260-215ENST00000557626 POTEAQ6S8J7 498 aa22.85■■□□□ 1.25
TMEM260-215ENST00000557626 ZMYM3Q14202 1370 aa22.85■■□□□ 1.25
TMEM260-215ENST00000557626 MLH3Q9UHC1 1453 aa22.83■■□□□ 1.25
TMEM260-215ENST00000557626 POLR1AO95602 1720 aaPredicted RBP22.81■■□□□ 1.24
TMEM260-215ENST00000557626 ARHGAP5Q13017 1502 aa22.78■■□□□ 1.24
TMEM260-215ENST00000557626 CDK13Q14004 1512 aaKnown RBP22.78■■□□□ 1.24
TMEM260-215ENST00000557626 CHIC1Q5VXU3 224 aa22.77■■□□□ 1.24
TMEM260-215ENST00000557626 NEURL4Q96JN8 1562 aa22.75■■□□□ 1.23
TMEM260-215ENST00000557626 CLTCQ00610 1675 aaKnown RBP22.74■■□□□ 1.23
TMEM260-215ENST00000557626 VWDEQ8N2E2 1590 aa22.74■■□□□ 1.23
TMEM260-215ENST00000557626 DNMT1P26358 1616 aaKnown RBP22.72■■□□□ 1.23
TMEM260-215ENST00000557626 RNF17Q9BXT8 1623 aaKnown RBP22.72■■□□□ 1.23
TMEM260-215ENST00000557626 A2ML1A8K2U0 1454 aa22.71■■□□□ 1.23
TMEM260-215ENST00000557626 KIDINS220Q9ULH0 1771 aa22.7■■□□□ 1.22
TMEM260-215ENST00000557626 RANGAP1P46060 587 aaPredicted RBP22.69■■□□□ 1.22
TMEM260-215ENST00000557626 KIF14Q15058 1648 aa22.68■■□□□ 1.22
TMEM260-215ENST00000557626 UPF1Q92900 1129 aaKnown RBP eCLIP22.65■■□□□ 1.22
TMEM260-215ENST00000557626 ITSN2Q9NZM3 1697 aa22.63■■□□□ 1.21
TMEM260-215ENST00000557626 SYNMO15061 1565 aa22.62■■□□□ 1.21
TMEM260-215ENST00000557626 ABCC1P33527 1531 aa22.62■■□□□ 1.21
TMEM260-215ENST00000557626 LRRC7Q96NW7 1537 aa22.62■■□□□ 1.21
TMEM260-215ENST00000557626 CDC42BPBQ9Y5S2 1711 aa22.6■■□□□ 1.21
TMEM260-215ENST00000557626 STRCP1A6NGW2 1772 aa22.58■■□□□ 1.21
TMEM260-215ENST00000557626 ANKLE2Q86XL3 938 aa22.57■■□□□ 1.2
TMEM260-215ENST00000557626 NPHP4O75161 1426 aaPredicted RBP22.56■■□□□ 1.2
TMEM260-215ENST00000557626 CDK11AQ9UQ88 783 aaPredicted RBP22.55■■□□□ 1.2
TMEM260-215ENST00000557626 IQGAP1P46940 1657 aa22.52■■□□□ 1.2
TMEM260-215ENST00000557626 DEPDC5O75140 1603 aa22.52■■□□□ 1.2
TMEM260-215ENST00000557626 MED14O60244 1454 aa22.52■■□□□ 1.2
TMEM260-215ENST00000557626 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.51■■□□□ 1.19
TMEM260-215ENST00000557626 PREX2Q70Z35 1606 aa22.5■■□□□ 1.19
TMEM260-215ENST00000557626 TROQ12816 1431 aaPredicted RBP22.5■■□□□ 1.19
TMEM260-215ENST00000557626 GGT6Q6P531 493 aa22.5■■□□□ 1.19
TMEM260-215ENST00000557626 SAMD9LQ8IVG5 1584 aa22.5■■□□□ 1.19
TMEM260-215ENST00000557626 CLIP1P30622 1438 aa22.49■■□□□ 1.19
TMEM260-215ENST00000557626 ATP1B4Q9UN42 357 aaPredicted RBP22.49■■□□□ 1.19
TMEM260-215ENST00000557626 PLXNC1O60486 1568 aa22.48■■□□□ 1.19
TMEM260-215ENST00000557626 TNRQ92752 1358 aa22.47■■□□□ 1.19
TMEM260-215ENST00000557626 FAM135BQ49AJ0 1406 aa22.45■■□□□ 1.18
TMEM260-215ENST00000557626 THEMISQ8N1K5 641 aaPredicted RBP22.44■■□□□ 1.18
TMEM260-215ENST00000557626 TRIM52Q96A61 297 aa22.44■■□□□ 1.18
TMEM260-215ENST00000557626 A2MP01023 1474 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms