RNA–Protein interactions for RNA: ENST00000554040.5

ATXN3-224, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-224ENST00000554040 PRDM2Q13029 1718 aa12.95□□□□□ -0.34
ATXN3-224ENST00000554040 POLA1P09884 1462 aaPredicted RBP12.95□□□□□ -0.34
ATXN3-224ENST00000554040 RAD54L2Q9Y4B4 1467 aa12.93□□□□□ -0.34
ATXN3-224ENST00000554040 SOGA1O94964 1423 aa12.93□□□□□ -0.34
ATXN3-224ENST00000554040 CLASP1Q7Z460 1538 aa12.92□□□□□ -0.34
ATXN3-224ENST00000554040 SNAPC4Q5SXM2 1469 aa12.91□□□□□ -0.34
ATXN3-224ENST00000554040 MAMSTRQ6ZN01 415 aa12.9□□□□□ -0.34
ATXN3-224ENST00000554040 SEC24BO95487 1268 aa12.89□□□□□ -0.35
ATXN3-224ENST00000554040 IRX5P78411 483 aaPredicted RBP12.88□□□□□ -0.35
ATXN3-224ENST00000554040 SYNJ1O43426 1573 aa12.88□□□□□ -0.35
ATXN3-224ENST00000554040 GAPVD1Q14C86 1478 aa12.87□□□□□ -0.35
ATXN3-224ENST00000554040 MAGI1Q96QZ7 1491 aaPredicted RBP12.86□□□□□ -0.35
ATXN3-224ENST00000554040 ZNF467Q7Z7K2 595 aaPredicted RBP12.86□□□□□ -0.35
ATXN3-224ENST00000554040 SCUBE2Q9NQ36 999 aa12.84□□□□□ -0.35
ATXN3-224ENST00000554040 GRIN2BQ13224 1484 aa12.84□□□□□ -0.35
ATXN3-224ENST00000554040 CIZ1Q9ULV3 898 aaPredicted RBP12.83□□□□□ -0.36
ATXN3-224ENST00000554040 SYNJ2O15056 1496 aa12.83□□□□□ -0.36
ATXN3-224ENST00000554040 WDR97A6NE52 1622 aa12.8□□□□□ -0.36
ATXN3-224ENST00000554040 FGD5Q6ZNL6 1462 aa12.79□□□□□ -0.36
ATXN3-224ENST00000554040 PLCG2P16885 1265 aa12.79□□□□□ -0.36
ATXN3-224ENST00000554040 LCE2DQ5TA82 110 aaPredicted RBP12.79□□□□□ -0.36
ATXN3-224ENST00000554040 PSEN1P49768 467 aa12.78□□□□□ -0.36
ATXN3-224ENST00000554040 ILDR1Q86SU0 546 aaPredicted RBP12.76□□□□□ -0.37
ATXN3-224ENST00000554040 OCEL1Q9H607 264 aa12.76□□□□□ -0.37
ATXN3-224ENST00000554040 PDCD7Q8N8D1 485 aaKnown RBP12.74□□□□□ -0.37
ATXN3-224ENST00000554040 PDAP1Q13442 181 aaKnown RBP12.72□□□□□ -0.37
ATXN3-224ENST00000554040 CUX1P39880 1505 aa12.71□□□□□ -0.38
ATXN3-224ENST00000554040 KDM4FA0A1W2PPD8 638 aa12.7□□□□□ -0.38
ATXN3-224ENST00000554040 POTEMA6NI47 508 aa12.7□□□□□ -0.38
ATXN3-224ENST00000554040 ERCC6L2Q5T890 1561 aa12.69□□□□□ -0.38
ATXN3-224ENST00000554040 FAM69CQ0P6D2 419 aa12.68□□□□□ -0.38
ATXN3-224ENST00000554040 POTEGQ6S5H5 508 aa12.68□□□□□ -0.38
ATXN3-224ENST00000554040 NUP160Q12769 1436 aa12.65□□□□□ -0.38
ATXN3-224ENST00000554040 MKRN3Q13064 507 aaKnown RBP12.65□□□□□ -0.38
ATXN3-224ENST00000554040 FAM163AQ96GL9 167 aaPredicted RBP12.65□□□□□ -0.38
ATXN3-224ENST00000554040 GRIN2AQ12879 1464 aa12.65□□□□□ -0.38
ATXN3-224ENST00000554040 ABCA10Q8WWZ4 1543 aa12.64□□□□□ -0.39
ATXN3-224ENST00000554040 SLAIN1Q8ND83 568 aa12.64□□□□□ -0.39
ATXN3-224ENST00000554040 RNF25Q96BH1 459 aaPredicted RBP12.64□□□□□ -0.39
ATXN3-224ENST00000554040 CEP170Q5SW79 1584 aa12.64□□□□□ -0.39
ATXN3-224ENST00000554040 GOLGA2Q08379 1002 aa12.62□□□□□ -0.39
ATXN3-224ENST00000554040 CABP2Q9NPB3 220 aa12.62□□□□□ -0.39
ATXN3-224ENST00000554040 JPH4Q96JJ6 628 aa12.61□□□□□ -0.39
ATXN3-224ENST00000554040 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.61□□□□□ -0.393e-6■■□□□ 13.5
ATXN3-224ENST00000554040 ABCC10Q5T3U5 1492 aa12.6□□□□□ -0.39
ATXN3-224ENST00000554040 PBRM1Q86U86 1689 aa12.6□□□□□ -0.39
ATXN3-224ENST00000554040 KIF13AQ9H1H9 1805 aa12.58□□□□□ -0.4
ATXN3-224ENST00000554040 PRG4Q92954 1404 aaPredicted RBP12.58□□□□□ -0.4
ATXN3-224ENST00000554040 ABCA5Q8WWZ7 1642 aa12.58□□□□□ -0.4
ATXN3-224ENST00000554040 FHAD1B1AJZ9 1412 aa12.57□□□□□ -0.4
ATXN3-224ENST00000554040 DPY19L2Q6NUT2 758 aa12.57□□□□□ -0.4
ATXN3-224ENST00000554040 SHROOM2Q13796 1616 aa12.55□□□□□ -0.4
ATXN3-224ENST00000554040 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.54□□□□□ -0.4
ATXN3-224ENST00000554040 WRNQ14191 1432 aaPredicted RBP eCLIP12.54□□□□□ -0.4
ATXN3-224ENST00000554040 RIOK3O14730 519 aaKnown RBP12.53□□□□□ -0.4
ATXN3-224ENST00000554040 L3MBTL3Q96JM7 780 aaPredicted RBP12.52□□□□□ -0.41
ATXN3-224ENST00000554040 ADAMTS12P58397 1594 aa12.52□□□□□ -0.41
ATXN3-224ENST00000554040 ST18O60284 1047 aa12.51□□□□□ -0.41
ATXN3-224ENST00000554040 EFCAB3Q8N7B9 438 aa12.51□□□□□ -0.41
ATXN3-224ENST00000554040 MAPKBP1O60336 1514 aa12.5□□□□□ -0.41
ATXN3-224ENST00000554040 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.48□□□□□ -0.41
ATXN3-224ENST00000554040 ZFP91Q96JP5 570 aaPredicted RBP12.48□□□□□ -0.41
ATXN3-224ENST00000554040 KDM6BO15054 1643 aa12.47□□□□□ -0.41
ATXN3-224ENST00000554040 DIP2BQ9P265 1576 aa12.47□□□□□ -0.41
ATXN3-224ENST00000554040 C3orf67Q6ZVT6 689 aa12.46□□□□□ -0.41
ATXN3-224ENST00000554040 VGFO15240 615 aaPredicted RBP12.45□□□□□ -0.42
ATXN3-224ENST00000554040 PLSCR2Q9NRY7 297 aa12.45□□□□□ -0.42
ATXN3-224ENST00000554040 ERICH3Q5RHP9 1530 aa12.45□□□□□ -0.42
ATXN3-224ENST00000554040 PCDH10Q9P2E7 1040 aa12.43□□□□□ -0.42
ATXN3-224ENST00000554040 BOLA1Q9Y3E2 137 aa12.43□□□□□ -0.42
ATXN3-224ENST00000554040 PKD2Q13563 968 aa12.42□□□□□ -0.42
ATXN3-224ENST00000554040 TMEM121BQ9BXQ6 578 aaPredicted RBP12.41□□□□□ -0.42
ATXN3-224ENST00000554040 ADCY10Q96PN6 1610 aa12.4□□□□□ -0.42
ATXN3-224ENST00000554040 MS4A4AQ96JQ5 239 aa12.4□□□□□ -0.42
ATXN3-224ENST00000554040 ADGRL1O94910 1474 aa12.39□□□□□ -0.43
ATXN3-224ENST00000554040 SNPHO15079 494 aa12.37□□□□□ -0.43
ATXN3-224ENST00000554040 TSPOAP1O95153 1857 aa12.36□□□□□ -0.43
ATXN3-224ENST00000554040 SOX12O15370 315 aa12.36□□□□□ -0.43
ATXN3-224ENST00000554040 PHF8Q9UPP1 1060 aa12.36□□□□□ -0.43
ATXN3-224ENST00000554040 PTPRGP23470 1445 aa12.36□□□□□ -0.43
ATXN3-224ENST00000554040 ECM2O94769 699 aaPredicted RBP12.35□□□□□ -0.43
ATXN3-224ENST00000554040 TOP2BQ02880 1626 aa12.35□□□□□ -0.43
ATXN3-224ENST00000554040 KIAA0586Q9BVV6 1533 aa12.34□□□□□ -0.43
ATXN3-224ENST00000554040 FBXO41Q8TF61 875 aa12.34□□□□□ -0.43
ATXN3-224ENST00000554040 RUSC2Q8N2Y8 1516 aa12.33□□□□□ -0.44
ATXN3-224ENST00000554040 RGL2O15211 777 aa12.33□□□□□ -0.44
ATXN3-224ENST00000554040 BCL11BQ9C0K0 894 aaPredicted RBP12.33□□□□□ -0.44
ATXN3-224ENST00000554040 COL17A1Q9UMD9 1497 aaPredicted RBP12.33□□□□□ -0.44
ATXN3-224ENST00000554040 HECW2Q9P2P5 1572 aa12.32□□□□□ -0.44
ATXN3-224ENST00000554040 CDAN1Q8IWY9 1227 aa12.32□□□□□ -0.44
ATXN3-224ENST00000554040 PLB1Q6P1J6 1458 aa12.32□□□□□ -0.44
ATXN3-224ENST00000554040 TTBK1Q5TCY1 1321 aaPredicted RBP12.32□□□□□ -0.44
ATXN3-224ENST00000554040 ASXL2Q76L83 1435 aa12.31□□□□□ -0.44
ATXN3-224ENST00000554040 BIVM-ERCC5R4GMW8 1640 aa12.31□□□□□ -0.44
ATXN3-224ENST00000554040 MICALL2Q8IY33 904 aa12.31□□□□□ -0.44
ATXN3-224ENST00000554040 HOXB3P14651 431 aaPredicted RBP12.3□□□□□ -0.44
ATXN3-224ENST00000554040 TMEM92Q6UXU6 159 aa12.3□□□□□ -0.44
ATXN3-224ENST00000554040 FBXO22Q8NEZ5 403 aa12.3□□□□□ -0.44
ATXN3-224ENST00000554040 MARVELD3Q96A59 401 aa12.3□□□□□ -0.44
ATXN3-224ENST00000554040 IGF1RP08069 1367 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms