RNA–Protein interactions for RNA: ENST00000554040.5

ATXN3-224, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-224ENST00000554040 AEBP2Q6ZN18 517 aaPredicted RBP27.41■■□□□ 1.98
ATXN3-224ENST00000554040 CHIC1Q5VXU3 224 aa26.08■■□□□ 1.77
ATXN3-224ENST00000554040 SENP3Q9H4L4 574 aaPredicted RBP23.22■■□□□ 1.31
ATXN3-224ENST00000554040 PHF23Q9BUL5 403 aaPredicted RBP22.98■■□□□ 1.27
ATXN3-224ENST00000554040 FOXD1Q16676 465 aa21.71■■□□□ 1.07
ATXN3-224ENST00000554040 PLPPR3Q6T4P5 718 aa20.83■□□□□ 0.93
ATXN3-224ENST00000554040 PPP6R1Q9UPN7 881 aa20.44■□□□□ 0.86
ATXN3-224ENST00000554040 ADRA2BP18089 450 aa20.33■□□□□ 0.85
ATXN3-224ENST00000554040 PIAS4Q8N2W9 510 aaPredicted RBP20.24■□□□□ 0.83
ATXN3-224ENST00000554040 MSH5O43196 834 aa20.17■□□□□ 0.82
ATXN3-224ENST00000554040 POTEDQ86YR6 584 aa19.55■□□□□ 0.72
ATXN3-224ENST00000554040 MAPK8IP2Q13387 824 aaPredicted RBP18.67■□□□□ 0.58
ATXN3-224ENST00000554040 DMRT2Q9Y5R5 561 aa18.48■□□□□ 0.55
ATXN3-224ENST00000554040 SCAF1Q9H7N4 1312 aaKnown RBP18.47■□□□□ 0.55
ATXN3-224ENST00000554040 PPP4R3CPQ6ZMV5 832 aa18.31■□□□□ 0.52
ATXN3-224ENST00000554040 CNKSR2Q8WXI2 1034 aa17.91■□□□□ 0.46
ATXN3-224ENST00000554040 HOXD11P31277 338 aaPredicted RBP17.87■□□□□ 0.45
ATXN3-224ENST00000554040 RNF216Q9NWF9 866 aaPredicted RBP17.73■□□□□ 0.43
ATXN3-224ENST00000554040 DCAF8L1A6NGE4 600 aa17.61■□□□□ 0.41
ATXN3-224ENST00000554040 NCBP3Q53F19 620 aaKnown RBP17.55■□□□□ 0.4
ATXN3-224ENST00000554040 NISCHQ9Y2I1 1504 aa17.55■□□□□ 0.4
ATXN3-224ENST00000554040 NPM3O75607 178 aaKnown RBP17.42■□□□□ 0.38
ATXN3-224ENST00000554040 RNF39Q9H2S5 420 aa17.3■□□□□ 0.36
ATXN3-224ENST00000554040 CACNB1Q02641 598 aaPredicted RBP17.22■□□□□ 0.35
ATXN3-224ENST00000554040 KCNA4P22459 653 aa17.21■□□□□ 0.35
ATXN3-224ENST00000554040 DNAJC5BQ9UF47 199 aa17.2■□□□□ 0.34
ATXN3-224ENST00000554040 C1QBPQ07021 282 aaKnown RBP16.99■□□□□ 0.31
ATXN3-224ENST00000554040 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.92■□□□□ 0.3
ATXN3-224ENST00000554040 U3KPZ7 1027 aaPredicted RBP16.69■□□□□ 0.26
ATXN3-224ENST00000554040 SLC4A2P04920 1241 aa16.65■□□□□ 0.26
ATXN3-224ENST00000554040 SPINK5Q9NQ38 1064 aaPredicted RBP16.41■□□□□ 0.22
ATXN3-224ENST00000554040 ABCC9O60706 1549 aa16.36■□□□□ 0.21
ATXN3-224ENST00000554040 CAPN15O75808 1086 aa16.28■□□□□ 0.2
ATXN3-224ENST00000554040 DSG3P32926 999 aa16.23■□□□□ 0.19
ATXN3-224ENST00000554040 SLC4A1APQ9BWU0 796 aaKnown RBP16.21■□□□□ 0.19
ATXN3-224ENST00000554040 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.12■□□□□ 0.17
ATXN3-224ENST00000554040 HNRNPUL2Q1KMD3 747 aaKnown RBP16.12■□□□□ 0.17
ATXN3-224ENST00000554040 SAMD1Q6SPF0 538 aaPredicted RBP16.07■□□□□ 0.16
ATXN3-224ENST00000554040 APLP2Q06481 763 aa16.06■□□□□ 0.16
ATXN3-224ENST00000554040 MYCNP04198 464 aaPredicted RBP16.05■□□□□ 0.16
ATXN3-224ENST00000554040 TRHP20396 242 aaPredicted RBP16.05■□□□□ 0.16
ATXN3-224ENST00000554040 ZNF219Q9P2Y4 722 aaPredicted RBP16.02■□□□□ 0.16
ATXN3-224ENST00000554040 FOXD4L1Q9NU39 408 aa15.97■□□□□ 0.15
ATXN3-224ENST00000554040 ABCB7O75027 752 aa15.96■□□□□ 0.15
ATXN3-224ENST00000554040 ZBTB22O15209 634 aa15.9■□□□□ 0.14
ATXN3-224ENST00000554040 CCDC180Q9P1Z9 1646 aa15.8■□□□□ 0.12
ATXN3-224ENST00000554040 ATF5Q9Y2D1 282 aaPredicted RBP15.78■□□□□ 0.12
ATXN3-224ENST00000554040 POLA2Q14181 598 aa15.68■□□□□ 0.1
ATXN3-224ENST00000554040 ATXN8OSP0DMR3 200 aa15.45■□□□□ 0.06
ATXN3-224ENST00000554040 RBM42Q9BTD8 480 aaKnown RBP15.38■□□□□ 0.05
ATXN3-224ENST00000554040 RB1CC1Q8TDY2 1594 aa15.33■□□□□ 0.05
ATXN3-224ENST00000554040 POTEHQ6S545 545 aa15.31■□□□□ 0.04
ATXN3-224ENST00000554040 ZBTB12Q9Y330 459 aaPredicted RBP15.3■□□□□ 0.04
ATXN3-224ENST00000554040 PABPN1Q86U42 306 aaKnown RBP eCLIP15.26■□□□□ 0.03
ATXN3-224ENST00000554040 CSRNP3Q8WYN3 585 aa15.23■□□□□ 0.03
ATXN3-224ENST00000554040 OSCARQ8IYS5 282 aa15.2■□□□□ 0.02
ATXN3-224ENST00000554040 NACADO15069 1562 aa15.15■□□□□ 0.02
ATXN3-224ENST00000554040 DCAF8L2P0C7V8 631 aa15.12■□□□□ 0.01
ATXN3-224ENST00000554040 AKT1S1Q96B36 256 aa15.1■□□□□ 0.01
ATXN3-224ENST00000554040 MKRN4PQ13434 485 aaPredicted RBP15.06■□□□□ 0
ATXN3-224ENST00000554040 CHRDL2Q6WN34 429 aa15.06■□□□□ 0
ATXN3-224ENST00000554040 EHMT2Q96KQ7 1210 aa15.03■□□□□ -0
ATXN3-224ENST00000554040 REM2Q8IYK8 340 aaPredicted RBP14.99□□□□□ -0.01
ATXN3-224ENST00000554040 FBLN2P98095 1184 aa14.98□□□□□ -0.01
ATXN3-224ENST00000554040 BICRAQ9NZM4 1560 aa14.9□□□□□ -0.02
ATXN3-224ENST00000554040 SPDYE2BA6NHP3 402 aa14.9□□□□□ -0.02
ATXN3-224ENST00000554040 SPDYE6P0CI01 402 aa14.9□□□□□ -0.02
ATXN3-224ENST00000554040 SPDYE2Q495Y8 402 aa14.9□□□□□ -0.02
ATXN3-224ENST00000554040 DNAJC5Q9H3Z4 198 aa14.89□□□□□ -0.03
ATXN3-224ENST00000554040 UNC13AQ9UPW8 1703 aa14.86□□□□□ -0.03
ATXN3-224ENST00000554040 PITPNM1O00562 1244 aa14.85□□□□□ -0.03
ATXN3-224ENST00000554040 MYO15BQ96JP2 1530 aa14.82□□□□□ -0.04
ATXN3-224ENST00000554040 CECR2Q9BXF3 1484 aa14.81□□□□□ -0.04
ATXN3-224ENST00000554040 SSUH2Q9Y2M2 353 aa14.78□□□□□ -0.04
ATXN3-224ENST00000554040 PIP4P2Q8N4L2 257 aa14.76□□□□□ -0.05
ATXN3-224ENST00000554040 ZNF692Q9BU19 519 aaPredicted RBP14.72□□□□□ -0.05
ATXN3-224ENST00000554040 CC2D2AQ9P2K1 1620 aa14.7□□□□□ -0.06
ATXN3-224ENST00000554040 FXR2P51116 673 aaKnown RBP eCLIP14.7□□□□□ -0.06
ATXN3-224ENST00000554040 SHROOM4Q9ULL8 1493 aa14.68□□□□□ -0.06
ATXN3-224ENST00000554040 SPDYE1Q8NFV5 336 aaPredicted RBP14.58□□□□□ -0.08
ATXN3-224ENST00000554040 EIF4G1Q04637 1599 aaKnown RBP14.58□□□□□ -0.08
ATXN3-224ENST00000554040 CLEC11AQ9Y240 323 aa14.53□□□□□ -0.08
ATXN3-224ENST00000554040 DCAF1Q9Y4B6 1507 aa14.46□□□□□ -0.1
ATXN3-224ENST00000554040 ZCCHC6Q5VYS8 1495 aaKnown RBP14.43□□□□□ -0.1
ATXN3-224ENST00000554040 SCRIBQ14160 1630 aa14.42□□□□□ -0.1
ATXN3-224ENST00000554040 PRKAR2AP13861 404 aaKnown RBP14.42□□□□□ -0.1
ATXN3-224ENST00000554040 SP7Q8TDD2 431 aaPredicted RBP14.41□□□□□ -0.1
ATXN3-224ENST00000554040 HAX1O00165 279 aa14.38□□□□□ -0.11
ATXN3-224ENST00000554040 EVX2Q03828 476 aa14.35□□□□□ -0.11
ATXN3-224ENST00000554040 CHADLQ6NUI6 762 aa14.33□□□□□ -0.12
ATXN3-224ENST00000554040 PRR29P0C7W0 189 aa14.32□□□□□ -0.12
ATXN3-224ENST00000554040 SPDYE4A6NLX3 237 aa14.31□□□□□ -0.12
ATXN3-224ENST00000554040 CUX2O14529 1486 aa14.28□□□□□ -0.12
ATXN3-224ENST00000554040 C19orf67A6NJJ6 358 aa14.23□□□□□ -0.13
ATXN3-224ENST00000554040 ERCC6Q03468 1493 aa14.16□□□□□ -0.14
ATXN3-224ENST00000554040 FARP1Q9Y4F1 1045 aaPredicted RBP14.11□□□□□ -0.15
ATXN3-224ENST00000554040 PROM2Q8N271 834 aa14.1□□□□□ -0.15
ATXN3-224ENST00000554040 STAG3Q9UJ98 1225 aa14.1□□□□□ -0.15
ATXN3-224ENST00000554040 CREBZFQ9NS37 354 aa14.09□□□□□ -0.15
ATXN3-224ENST00000554040 NCAPD3P42695 1498 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms