RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 SPOCK2Q92563 424 aa10.68□□□□□ -0.7
DEPDC4-209ENST00000550587 PLCG2P16885 1265 aa10.67□□□□□ -0.7
DEPDC4-209ENST00000550587 EIF4G3O43432 1585 aaKnown RBP10.67□□□□□ -0.7
DEPDC4-209ENST00000550587 ARHGEF11O15085 1522 aa10.67□□□□□ -0.7
DEPDC4-209ENST00000550587 FAM163AQ96GL9 167 aaPredicted RBP10.66□□□□□ -0.7
DEPDC4-209ENST00000550587 AQRO60306 1485 aaKnown RBP eCLIP10.66□□□□□ -0.7
DEPDC4-209ENST00000550587 CHRM1P11229 460 aaPredicted RBP10.65□□□□□ -0.7
DEPDC4-209ENST00000550587 ZNF467Q7Z7K2 595 aaPredicted RBP10.65□□□□□ -0.7
DEPDC4-209ENST00000550587 CIZ1Q9ULV3 898 aaPredicted RBP10.65□□□□□ -0.7
DEPDC4-209ENST00000550587 LCE2DQ5TA82 110 aaPredicted RBP10.64□□□□□ -0.71
DEPDC4-209ENST00000550587 SOGA1O94964 1423 aa10.63□□□□□ -0.71
DEPDC4-209ENST00000550587 CHMP7Q8WUX9 453 aaPredicted RBP10.62□□□□□ -0.71
DEPDC4-209ENST00000550587 OCEL1Q9H607 264 aa10.62□□□□□ -0.71
DEPDC4-209ENST00000550587 TARBP1Q13395 1621 aaKnown RBP10.62□□□□□ -0.71
DEPDC4-209ENST00000550587 POLA1P09884 1462 aaPredicted RBP10.61□□□□□ -0.71
DEPDC4-209ENST00000550587 CHD1O14646 1710 aa10.61□□□□□ -0.71
DEPDC4-209ENST00000550587 PSEN1P49768 467 aa10.6□□□□□ -0.71
DEPDC4-209ENST00000550587 TDRD9Q8NDG6 1382 aaKnown RBP10.6□□□□□ -0.71
DEPDC4-209ENST00000550587 SLAIN1Q8ND83 568 aa10.59□□□□□ -0.71
DEPDC4-209ENST00000550587 RAD54L2Q9Y4B4 1467 aa10.58□□□□□ -0.72
DEPDC4-209ENST00000550587 WDR97A6NE52 1622 aa10.57□□□□□ -0.72
DEPDC4-209ENST00000550587 GOLGA2Q08379 1002 aa10.56□□□□□ -0.72
DEPDC4-209ENST00000550587 MKRN3Q13064 507 aaKnown RBP10.55□□□□□ -0.72
DEPDC4-209ENST00000550587 FGD5Q6ZNL6 1462 aa10.55□□□□□ -0.72
DEPDC4-209ENST00000550587 SYNJ1O43426 1573 aa10.54□□□□□ -0.72
DEPDC4-209ENST00000550587 ILDR1Q86SU0 546 aaPredicted RBP10.54□□□□□ -0.72
DEPDC4-209ENST00000550587 GRIN2BQ13224 1484 aa10.54□□□□□ -0.72
DEPDC4-209ENST00000550587 SNAPC4Q5SXM2 1469 aa10.54□□□□□ -0.72
DEPDC4-209ENST00000550587 MAGI1Q96QZ7 1491 aaPredicted RBP10.54□□□□□ -0.72
DEPDC4-209ENST00000550587 PDAP1Q13442 181 aaKnown RBP10.53□□□□□ -0.72
DEPDC4-209ENST00000550587 PDCD7Q8N8D1 485 aaKnown RBP10.53□□□□□ -0.72
DEPDC4-209ENST00000550587 ARAP1Q96P48 1450 aa10.53□□□□□ -0.72
DEPDC4-209ENST00000550587 SYNJ2O15056 1496 aa10.5□□□□□ -0.73
DEPDC4-209ENST00000550587 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.5□□□□□ -0.73
DEPDC4-209ENST00000550587 CUX1P39880 1505 aa10.49□□□□□ -0.73
DEPDC4-209ENST00000550587 GAPVD1Q14C86 1478 aa10.49□□□□□ -0.73
DEPDC4-209ENST00000550587 CABP2Q9NPB3 220 aa10.48□□□□□ -0.73
DEPDC4-209ENST00000550587 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.48□□□□□ -0.73
DEPDC4-209ENST00000550587 CLASP1Q7Z460 1538 aa10.46□□□□□ -0.74
DEPDC4-209ENST00000550587 ST18O60284 1047 aa10.45□□□□□ -0.74
DEPDC4-209ENST00000550587 PBRM1Q86U86 1689 aa10.44□□□□□ -0.74
DEPDC4-209ENST00000550587 DPY19L2Q6NUT2 758 aa10.44□□□□□ -0.74
DEPDC4-209ENST00000550587 WRNQ14191 1432 aaPredicted RBP eCLIP10.43□□□□□ -0.74
DEPDC4-209ENST00000550587 L3MBTL3Q96JM7 780 aaPredicted RBP10.43□□□□□ -0.74
DEPDC4-209ENST00000550587 ABCA10Q8WWZ4 1543 aa10.43□□□□□ -0.74
DEPDC4-209ENST00000550587 C3orf67Q6ZVT6 689 aa10.41□□□□□ -0.74
DEPDC4-209ENST00000550587 ABCA5Q8WWZ7 1642 aa10.38□□□□□ -0.75
DEPDC4-209ENST00000550587 GRIN2AQ12879 1464 aa10.37□□□□□ -0.75
DEPDC4-209ENST00000550587 RNF25Q96BH1 459 aaPredicted RBP10.37□□□□□ -0.75
DEPDC4-209ENST00000550587 EFCAB3Q8N7B9 438 aa10.36□□□□□ -0.75
DEPDC4-209ENST00000550587 FHAD1B1AJZ9 1412 aa10.35□□□□□ -0.75
DEPDC4-209ENST00000550587 SNPHO15079 494 aa10.35□□□□□ -0.75
DEPDC4-209ENST00000550587 CDAN1Q8IWY9 1227 aa10.35□□□□□ -0.75
DEPDC4-209ENST00000550587 RIOK3O14730 519 aaKnown RBP10.34□□□□□ -0.75
DEPDC4-209ENST00000550587 TOP2BQ02880 1626 aa10.33□□□□□ -0.76
DEPDC4-209ENST00000550587 BOLA1Q9Y3E2 137 aa10.33□□□□□ -0.76
DEPDC4-209ENST00000550587 BIVM-ERCC5R4GMW8 1640 aa10.32□□□□□ -0.76
DEPDC4-209ENST00000550587 ERICH3Q5RHP9 1530 aa10.32□□□□□ -0.76
DEPDC4-209ENST00000550587 NUP160Q12769 1436 aa10.32□□□□□ -0.76
DEPDC4-209ENST00000550587 ADAMTS12P58397 1594 aa10.31□□□□□ -0.76
DEPDC4-209ENST00000550587 CEP170Q5SW79 1584 aa10.31□□□□□ -0.76
DEPDC4-209ENST00000550587 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.31□□□□□ -0.76
DEPDC4-209ENST00000550587 ZFP91Q96JP5 570 aaPredicted RBP10.31□□□□□ -0.76
DEPDC4-209ENST00000550587 G3V3G9 751 aa10.3□□□□□ -0.76
DEPDC4-209ENST00000550587 MARVELD3Q96A59 401 aa10.3□□□□□ -0.76
DEPDC4-209ENST00000550587 JPH4Q96JJ6 628 aa10.3□□□□□ -0.76
DEPDC4-209ENST00000550587 TMEM121BQ9BXQ6 578 aaPredicted RBP10.29□□□□□ -0.76
DEPDC4-209ENST00000550587 PRG4Q92954 1404 aaPredicted RBP10.28□□□□□ -0.76
DEPDC4-209ENST00000550587 VGFO15240 615 aaPredicted RBP10.28□□□□□ -0.76
DEPDC4-209ENST00000550587 ERCC6L2Q5T890 1561 aa10.26□□□□□ -0.77
DEPDC4-209ENST00000550587 SHROOM2Q13796 1616 aa10.26□□□□□ -0.77
DEPDC4-209ENST00000550587 FAM69CQ0P6D2 419 aa10.23□□□□□ -0.77
DEPDC4-209ENST00000550587 PHF8Q9UPP1 1060 aa10.23□□□□□ -0.77
DEPDC4-209ENST00000550587 SOX12O15370 315 aa10.22□□□□□ -0.77
DEPDC4-209ENST00000550587 MS4A4AQ96JQ5 239 aa10.22□□□□□ -0.77
DEPDC4-209ENST00000550587 EMP3P54852 163 aa10.2□□□□□ -0.78
DEPDC4-209ENST00000550587 KIF27Q86VH2 1401 aa10.2□□□□□ -0.78
DEPDC4-209ENST00000550587 MICALL2Q8IY33 904 aa10.2□□□□□ -0.78
DEPDC4-209ENST00000550587 ECM2O94769 699 aaPredicted RBP10.19□□□□□ -0.78
DEPDC4-209ENST00000550587 HOXB3P14651 431 aaPredicted RBP10.19□□□□□ -0.78
DEPDC4-209ENST00000550587 BCL11BQ9C0K0 894 aaPredicted RBP10.19□□□□□ -0.78
DEPDC4-209ENST00000550587 KIAA0586Q9BVV6 1533 aa10.18□□□□□ -0.78
DEPDC4-209ENST00000550587 POTEB3A0JP26 581 aa10.17□□□□□ -0.78
DEPDC4-209ENST00000550587 POTEBQ6S5H4 581 aa10.17□□□□□ -0.78
DEPDC4-209ENST00000550587 TMEM92Q6UXU6 159 aa10.17□□□□□ -0.78
DEPDC4-209ENST00000550587 RUSC2Q8N2Y8 1516 aa10.17□□□□□ -0.78
DEPDC4-209ENST00000550587 ABCC10Q5T3U5 1492 aa10.17□□□□□ -0.78
DEPDC4-209ENST00000550587 KIF13AQ9H1H9 1805 aa10.17□□□□□ -0.78
DEPDC4-209ENST00000550587 STK24Q9Y6E0 443 aa10.16□□□□□ -0.78
DEPDC4-209ENST00000550587 CARMIL2Q6F5E8 1435 aa10.16□□□□□ -0.78
DEPDC4-209ENST00000550587 CUL7Q14999 1698 aa10.15□□□□□ -0.78
DEPDC4-209ENST00000550587 IGF1RP08069 1367 aa10.15□□□□□ -0.78
DEPDC4-209ENST00000550587 TTBK1Q5TCY1 1321 aaPredicted RBP10.15□□□□□ -0.78
DEPDC4-209ENST00000550587 FAM205CA6NFA0 338 aa10.15□□□□□ -0.78
DEPDC4-209ENST00000550587 PKD2Q13563 968 aa10.15□□□□□ -0.78
DEPDC4-209ENST00000550587 MAPKBP1O60336 1514 aa10.14□□□□□ -0.79
DEPDC4-209ENST00000550587 HS3ST6Q96QI5 342 aa10.14□□□□□ -0.79
DEPDC4-209ENST00000550587 PTPRGP23470 1445 aa10.14□□□□□ -0.79
DEPDC4-209ENST00000550587 TAOK2Q9UL54 1235 aa10.13□□□□□ -0.79
DEPDC4-209ENST00000550587 CARMIL1Q5VZK9 1371 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms