RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 AEBP2Q6ZN18 517 aaPredicted RBP22.78■■□□□ 1.24
DEPDC4-209ENST00000550587 CHIC1Q5VXU3 224 aa21.62■■□□□ 1.05
DEPDC4-209ENST00000550587 SENP3Q9H4L4 574 aaPredicted RBP19.35■□□□□ 0.69
DEPDC4-209ENST00000550587 PHF23Q9BUL5 403 aaPredicted RBP19.15■□□□□ 0.66
DEPDC4-209ENST00000550587 FOXD1Q16676 465 aa18.09■□□□□ 0.49
DEPDC4-209ENST00000550587 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
DEPDC4-209ENST00000550587 POTEDQ86YR6 584 aa17.11■□□□□ 0.33
DEPDC4-209ENST00000550587 PPP6R1Q9UPN7 881 aa16.97■□□□□ 0.31
DEPDC4-209ENST00000550587 ADRA2BP18089 450 aa16.93■□□□□ 0.3
DEPDC4-209ENST00000550587 PIAS4Q8N2W9 510 aaPredicted RBP16.9■□□□□ 0.3
DEPDC4-209ENST00000550587 MSH5O43196 834 aa16.85■□□□□ 0.29
DEPDC4-209ENST00000550587 MAPK8IP2Q13387 824 aaPredicted RBP15.54■□□□□ 0.08
DEPDC4-209ENST00000550587 SCAF1Q9H7N4 1312 aaKnown RBP15.39■□□□□ 0.05
DEPDC4-209ENST00000550587 DMRT2Q9Y5R5 561 aa15.37■□□□□ 0.05
DEPDC4-209ENST00000550587 PPP4R3CPQ6ZMV5 832 aa15.18■□□□□ 0.02
DEPDC4-209ENST00000550587 CNKSR2Q8WXI2 1034 aa14.85□□□□□ -0.03
DEPDC4-209ENST00000550587 HOXD11P31277 338 aaPredicted RBP14.81□□□□□ -0.04
DEPDC4-209ENST00000550587 DCAF8L1A6NGE4 600 aa14.78□□□□□ -0.04
DEPDC4-209ENST00000550587 RNF216Q9NWF9 866 aaPredicted RBP14.71□□□□□ -0.05
DEPDC4-209ENST00000550587 NCBP3Q53F19 620 aaKnown RBP14.56□□□□□ -0.08
DEPDC4-209ENST00000550587 CACNB1Q02641 598 aaPredicted RBP14.55□□□□□ -0.08
DEPDC4-209ENST00000550587 NISCHQ9Y2I1 1504 aa14.52□□□□□ -0.08
DEPDC4-209ENST00000550587 NPM3O75607 178 aaKnown RBP14.41□□□□□ -0.1
DEPDC4-209ENST00000550587 RNF39Q9H2S5 420 aa14.4□□□□□ -0.1
DEPDC4-209ENST00000550587 DNAJC5BQ9UF47 199 aa14.23□□□□□ -0.13
DEPDC4-209ENST00000550587 KCNA4P22459 653 aa14.19□□□□□ -0.14
DEPDC4-209ENST00000550587 C1QBPQ07021 282 aaKnown RBP14.17□□□□□ -0.14
DEPDC4-209ENST00000550587 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.14□□□□□ -0.15
DEPDC4-209ENST00000550587 U3KPZ7 1027 aaPredicted RBP13.85□□□□□ -0.19
DEPDC4-209ENST00000550587 SLC4A2P04920 1241 aa13.76□□□□□ -0.21
DEPDC4-209ENST00000550587 SPINK5Q9NQ38 1064 aaPredicted RBP13.67□□□□□ -0.22
DEPDC4-209ENST00000550587 CAPN15O75808 1086 aa13.63□□□□□ -0.23
DEPDC4-209ENST00000550587 DSG3P32926 999 aa13.52□□□□□ -0.25
DEPDC4-209ENST00000550587 TRHP20396 242 aaPredicted RBP13.43□□□□□ -0.26
DEPDC4-209ENST00000550587 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.39□□□□□ -0.27
DEPDC4-209ENST00000550587 APLP2Q06481 763 aa13.39□□□□□ -0.27
DEPDC4-209ENST00000550587 HNRNPUL2Q1KMD3 747 aaKnown RBP13.39□□□□□ -0.27
DEPDC4-209ENST00000550587 SLC4A1APQ9BWU0 796 aaKnown RBP13.37□□□□□ -0.27
DEPDC4-209ENST00000550587 ABCB7O75027 752 aa13.34□□□□□ -0.27
DEPDC4-209ENST00000550587 SAMD1Q6SPF0 538 aaPredicted RBP13.34□□□□□ -0.27
DEPDC4-209ENST00000550587 ZNF219Q9P2Y4 722 aaPredicted RBP13.34□□□□□ -0.27
DEPDC4-209ENST00000550587 POTEHQ6S545 545 aa13.3□□□□□ -0.28
DEPDC4-209ENST00000550587 MYCNP04198 464 aaPredicted RBP13.29□□□□□ -0.28
DEPDC4-209ENST00000550587 FOXD4L1Q9NU39 408 aa13.18□□□□□ -0.3
DEPDC4-209ENST00000550587 ABCC9O60706 1549 aa13.17□□□□□ -0.3
DEPDC4-209ENST00000550587 CCDC180Q9P1Z9 1646 aa13.07□□□□□ -0.32
DEPDC4-209ENST00000550587 POLA2Q14181 598 aa13.06□□□□□ -0.32
DEPDC4-209ENST00000550587 ZBTB22O15209 634 aa13.05□□□□□ -0.32
DEPDC4-209ENST00000550587 ATF5Q9Y2D1 282 aaPredicted RBP13.05□□□□□ -0.32
DEPDC4-209ENST00000550587 RBM42Q9BTD8 480 aaKnown RBP12.85□□□□□ -0.35
DEPDC4-209ENST00000550587 ATXN8OSP0DMR3 200 aa12.73□□□□□ -0.37
DEPDC4-209ENST00000550587 ZBTB12Q9Y330 459 aaPredicted RBP12.72□□□□□ -0.37
DEPDC4-209ENST00000550587 OSCARQ8IYS5 282 aa12.65□□□□□ -0.38
DEPDC4-209ENST00000550587 CHRDL2Q6WN34 429 aa12.59□□□□□ -0.39
DEPDC4-209ENST00000550587 AKT1S1Q96B36 256 aa12.59□□□□□ -0.39
DEPDC4-209ENST00000550587 RB1CC1Q8TDY2 1594 aa12.53□□□□□ -0.4
DEPDC4-209ENST00000550587 REM2Q8IYK8 340 aaPredicted RBP12.5□□□□□ -0.41
DEPDC4-209ENST00000550587 CSRNP3Q8WYN3 585 aa12.48□□□□□ -0.41
DEPDC4-209ENST00000550587 FBLN2P98095 1184 aa12.47□□□□□ -0.41
DEPDC4-209ENST00000550587 DCAF8L2P0C7V8 631 aa12.46□□□□□ -0.41
DEPDC4-209ENST00000550587 MKRN4PQ13434 485 aaPredicted RBP12.43□□□□□ -0.42
DEPDC4-209ENST00000550587 NACADO15069 1562 aa12.42□□□□□ -0.42
DEPDC4-209ENST00000550587 PITPNM1O00562 1244 aa12.37□□□□□ -0.43
DEPDC4-209ENST00000550587 SPDYE2BA6NHP3 402 aa12.36□□□□□ -0.43
DEPDC4-209ENST00000550587 SPDYE6P0CI01 402 aa12.36□□□□□ -0.43
DEPDC4-209ENST00000550587 SPDYE2Q495Y8 402 aa12.36□□□□□ -0.43
DEPDC4-209ENST00000550587 EHMT2Q96KQ7 1210 aa12.35□□□□□ -0.43
DEPDC4-209ENST00000550587 PIP4P2Q8N4L2 257 aa12.32□□□□□ -0.44
DEPDC4-209ENST00000550587 PABPN1Q86U42 306 aaKnown RBP eCLIP12.27□□□□□ -0.45
DEPDC4-209ENST00000550587 SP7Q8TDD2 431 aaPredicted RBP12.26□□□□□ -0.45
DEPDC4-209ENST00000550587 ZNF692Q9BU19 519 aaPredicted RBP12.26□□□□□ -0.45
DEPDC4-209ENST00000550587 FXR2P51116 673 aaKnown RBP eCLIP12.24□□□□□ -0.45
DEPDC4-209ENST00000550587 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
DEPDC4-209ENST00000550587 DNAJC5Q9H3Z4 198 aa12.19□□□□□ -0.46
DEPDC4-209ENST00000550587 MYO15BQ96JP2 1530 aa12.19□□□□□ -0.46
DEPDC4-209ENST00000550587 CLEC11AQ9Y240 323 aa12.18□□□□□ -0.46
DEPDC4-209ENST00000550587 UNC13AQ9UPW8 1703 aa12.14□□□□□ -0.47
DEPDC4-209ENST00000550587 SPDYE1Q8NFV5 336 aaPredicted RBP12.14□□□□□ -0.47
DEPDC4-209ENST00000550587 HAX1O00165 279 aa12.08□□□□□ -0.48
DEPDC4-209ENST00000550587 BICRAQ9NZM4 1560 aa12.05□□□□□ -0.48
DEPDC4-209ENST00000550587 PRKAR2AP13861 404 aaKnown RBP12.05□□□□□ -0.48
DEPDC4-209ENST00000550587 DCAF1Q9Y4B6 1507 aa12□□□□□ -0.49
DEPDC4-209ENST00000550587 EVX2Q03828 476 aa11.99□□□□□ -0.49
DEPDC4-209ENST00000550587 ZCCHC6Q5VYS8 1495 aaKnown RBP11.99□□□□□ -0.49
DEPDC4-209ENST00000550587 SHROOM4Q9ULL8 1493 aa11.99□□□□□ -0.49
DEPDC4-209ENST00000550587 CHADLQ6NUI6 762 aa11.96□□□□□ -0.49
DEPDC4-209ENST00000550587 PRR29P0C7W0 189 aa11.95□□□□□ -0.5
DEPDC4-209ENST00000550587 SCRIBQ14160 1630 aa11.89□□□□□ -0.51
DEPDC4-209ENST00000550587 CECR2Q9BXF3 1484 aa11.89□□□□□ -0.51
DEPDC4-209ENST00000550587 CC2D2AQ9P2K1 1620 aa11.87□□□□□ -0.51
DEPDC4-209ENST00000550587 C19orf67A6NJJ6 358 aa11.84□□□□□ -0.51
DEPDC4-209ENST00000550587 SPDYE4A6NLX3 237 aa11.84□□□□□ -0.51
DEPDC4-209ENST00000550587 EIF4G1Q04637 1599 aaKnown RBP11.83□□□□□ -0.52
DEPDC4-209ENST00000550587 FARP1Q9Y4F1 1045 aaPredicted RBP11.74□□□□□ -0.53
DEPDC4-209ENST00000550587 STAG3Q9UJ98 1225 aa11.71□□□□□ -0.53
DEPDC4-209ENST00000550587 GABBR2O75899 941 aa11.68□□□□□ -0.54
DEPDC4-209ENST00000550587 CREBZFQ9NS37 354 aa11.68□□□□□ -0.54
DEPDC4-209ENST00000550587 CD44P16070 742 aaKnown RBP11.66□□□□□ -0.54
DEPDC4-209ENST00000550587 PROM2Q8N271 834 aa11.53□□□□□ -0.56
DEPDC4-209ENST00000550587 ZRANB1Q9UGI0 708 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms