RNA–Protein interactions for RNA: ENST00000544585.5

CPSF7-222, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 2

Gene CPSF7, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-222	ENST00000544585	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.99	□□□□□ -0.65
CPSF7-222	ENST00000544585	TARBP1	Q13395	1621 aa	Known RBP	10.96	□□□□□ -0.65
CPSF7-222	ENST00000544585	POLA1	P09884	1462 aa	Predicted RBP	10.96	□□□□□ -0.65
CPSF7-222	ENST00000544585	RAD54L2	Q9Y4B4	1467 aa		10.94	□□□□□ -0.66
CPSF7-222	ENST00000544585	PCDHB8	Q9UN66	801 aa		10.94	□□□□□ -0.66
CPSF7-222	ENST00000544585	PCDHB13	Q9Y5F0	798 aa		10.94	□□□□□ -0.66
CPSF7-222	ENST00000544585	CHD1	O14646	1710 aa		10.94	□□□□□ -0.66
CPSF7-222	ENST00000544585	PSEN1	P49768	467 aa		10.92	□□□□□ -0.66
CPSF7-222	ENST00000544585	CHADL	Q6NUI6	762 aa		10.91	□□□□□ -0.66
CPSF7-222	ENST00000544585	MFRP	Q9BY79	579 aa		10.91	□□□□□ -0.66
CPSF7-222	ENST00000544585	ARHGEF1	Q92888	912 aa	Known RBP	10.9	□□□□□ -0.66
CPSF7-222	ENST00000544585	GRIN2B	Q13224	1484 aa		10.89	□□□□□ -0.67
CPSF7-222	ENST00000544585	SNAPC4	Q5SXM2	1469 aa		10.89	□□□□□ -0.67
CPSF7-222	ENST00000544585	MAGI1	Q96QZ7	1491 aa	Predicted RBP	10.89	□□□□□ -0.67
CPSF7-222	ENST00000544585	ZNF579	Q8NAF0	562 aa	Known RBP	10.89	□□□□□ -0.67
CPSF7-222	ENST00000544585	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.89	□□□□□ -0.67
CPSF7-222	ENST00000544585	SYNJ1	O43426	1573 aa		10.89	□□□□□ -0.67
CPSF7-222	ENST00000544585	WDR97	A6NE52	1622 aa		10.87	□□□□□ -0.67
CPSF7-222	ENST00000544585	CLASP1	Q7Z460	1538 aa		10.87	□□□□□ -0.67
CPSF7-222	ENST00000544585	SYNJ2	O15056	1496 aa		10.87	□□□□□ -0.67
CPSF7-222	ENST00000544585	E2F4	Q16254	413 aa		10.86	□□□□□ -0.67
CPSF7-222	ENST00000544585	C14orf37	Q86TY3	774 aa		10.86	□□□□□ -0.67
CPSF7-222	ENST00000544585	GAPVD1	Q14C86	1478 aa		10.86	□□□□□ -0.67
CPSF7-222	ENST00000544585	FGD5	Q6ZNL6	1462 aa		10.85	□□□□□ -0.67
CPSF7-222	ENST00000544585	NLRP6	P59044	892 aa		10.84	□□□□□ -0.67
CPSF7-222	ENST00000544585	CCDC61	Q9Y6R9	512 aa		10.84	□□□□□ -0.67
CPSF7-222	ENST00000544585	ARX	Q96QS3	562 aa		10.83	□□□□□ -0.68
CPSF7-222	ENST00000544585	BRPF1	P55201	1214 aa	Predicted RBP	10.82	□□□□□ -0.68
CPSF7-222	ENST00000544585	ZC3H15	Q8WU90	426 aa	Known RBP	10.82	□□□□□ -0.68
CPSF7-222	ENST00000544585	SOX12	O15370	315 aa		10.81	□□□□□ -0.68
CPSF7-222	ENST00000544585	PPP1R37	O75864	691 aa		10.81	□□□□□ -0.68
CPSF7-222	ENST00000544585	PAK3	O75914	559 aa	Predicted RBP	10.8	□□□□□ -0.68
CPSF7-222	ENST00000544585	EFCAB3	Q8N7B9	438 aa		10.8	□□□□□ -0.68
CPSF7-222	ENST00000544585	CABP2	Q9NPB3	220 aa		10.79	□□□□□ -0.68
CPSF7-222	ENST00000544585	SEMA3E	O15041	775 aa		10.78	□□□□□ -0.68
CPSF7-222	ENST00000544585	FBXO22	Q8NEZ5	403 aa		10.78	□□□□□ -0.68
CPSF7-222	ENST00000544585	CUX1	P39880	1505 aa		10.78	□□□□□ -0.68
CPSF7-222	ENST00000544585	TESPA1	A2RU30	521 aa	Predicted RBP	10.77	□□□□□ -0.69
CPSF7-222	ENST00000544585	NEUROD2	Q15784	382 aa		10.77	□□□□□ -0.69
CPSF7-222	ENST00000544585	IFNL1	Q8IU54	200 aa		10.77	□□□□□ -0.69
CPSF7-222	ENST00000544585	PHF8	Q9UPP1	1060 aa		10.77	□□□□□ -0.69
CPSF7-222	ENST00000544585	PRKAR2A	P13861	404 aa	Known RBP	10.76	□□□□□ -0.69
CPSF7-222	ENST00000544585	SMYD5	Q6GMV2	418 aa		10.76	□□□□□ -0.69
CPSF7-222	ENST00000544585	SLC24A3	Q9HC58	644 aa		10.74	□□□□□ -0.69
CPSF7-222	ENST00000544585	ABCA10	Q8WWZ4	1543 aa		10.74	□□□□□ -0.69
CPSF7-222	ENST00000544585	PDE4A	P27815	886 aa		10.73	□□□□□ -0.69
CPSF7-222	ENST00000544585	JPH4	Q96JJ6	628 aa		10.73	□□□□□ -0.69
CPSF7-222	ENST00000544585	FAM69C	Q0P6D2	419 aa		10.72	□□□□□ -0.69
CPSF7-222	ENST00000544585	LARP6	Q9BRS8	491 aa	Known RBP	10.72	□□□□□ -0.69
CPSF7-222	ENST00000544585	GRIN2A	Q12879	1464 aa		10.72	□□□□□ -0.69
CPSF7-222	ENST00000544585	MAP3K13	O43283	966 aa		10.71	□□□□□ -0.69
CPSF7-222	ENST00000544585	NUP160	Q12769	1436 aa		10.7	□□□□□ -0.7
CPSF7-222	ENST00000544585	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.7	□□□□□ -0.7
CPSF7-222	ENST00000544585	NCKAP5L	Q9HCH0	1330 aa		10.69	□□□□□ -0.7
CPSF7-222	ENST00000544585	KIF12	Q96FN5	646 aa		10.69	□□□□□ -0.7
CPSF7-222	ENST00000544585	FHAD1	B1AJZ9	1412 aa		10.68	□□□□□ -0.7
CPSF7-222	ENST00000544585	CEP170	Q5SW79	1584 aa		10.67	□□□□□ -0.7
CPSF7-222	ENST00000544585	PRG4	Q92954	1404 aa	Predicted RBP	10.67	□□□□□ -0.7
CPSF7-222	ENST00000544585	PBRM1	Q86U86	1689 aa		10.66	□□□□□ -0.7
CPSF7-222	ENST00000544585	ERCC6L2	Q5T890	1561 aa		10.66	□□□□□ -0.7
CPSF7-222	ENST00000544585	ZMYND10	O75800	440 aa		10.66	□□□□□ -0.7
CPSF7-222	ENST00000544585	DDX27	Q96GQ7	796 aa	Known RBP	10.65	□□□□□ -0.7
CPSF7-222	ENST00000544585	ABCA5	Q8WWZ7	1642 aa		10.65	□□□□□ -0.7
CPSF7-222	ENST00000544585	KDM4F	A0A1W2PPD8	638 aa		10.64	□□□□□ -0.71
CPSF7-222	ENST00000544585	GOLGA2	Q08379	1002 aa		10.64	□□□□□ -0.71
CPSF7-222	ENST00000544585	MFSD10	Q14728	455 aa		10.64	□□□□□ -0.71
CPSF7-222	ENST00000544585	HOMEZ	Q8IX15	550 aa		10.64	□□□□□ -0.71
CPSF7-222	ENST00000544585	ABCC10	Q5T3U5	1492 aa		10.62	□□□□□ -0.71
CPSF7-222	ENST00000544585	FXR2	P51116	673 aa	Known RBP eCLIP	10.62	□□□□□ -0.71
CPSF7-222	ENST00000544585	CRISPLD2	Q9H0B8	497 aa		10.62	□□□□□ -0.71
CPSF7-222	ENST00000544585	ARIH1	Q9Y4X5	557 aa	Predicted RBP	10.62	□□□□□ -0.71
CPSF7-222	ENST00000544585	SHROOM2	Q13796	1616 aa		10.6	□□□□□ -0.71
CPSF7-222	ENST00000544585	MS4A4A	Q96JQ5	239 aa		10.6	□□□□□ -0.71
CPSF7-222	ENST00000544585	ERICH3	Q5RHP9	1530 aa		10.59	□□□□□ -0.71
CPSF7-222	ENST00000544585	SUPT5H	O00267	1087 aa	Known RBP	10.59	□□□□□ -0.71
CPSF7-222	ENST00000544585	BARGIN	Q6ZT62	677 aa		10.59	□□□□□ -0.71
CPSF7-222	ENST00000544585	ADAMTS12	P58397	1594 aa		10.58	□□□□□ -0.72
CPSF7-222	ENST00000544585	DAXX	Q9UER7	740 aa	Predicted RBP	10.58	□□□□□ -0.72
CPSF7-222	ENST00000544585	KIF13A	Q9H1H9	1805 aa		10.57	□□□□□ -0.72
CPSF7-222	ENST00000544585	CAMK2B	Q13554	666 aa		10.57	□□□□□ -0.72
CPSF7-222	ENST00000544585	AK7	Q96M32	723 aa		10.56	□□□□□ -0.72
CPSF7-222	ENST00000544585	ZRANB1	Q9UGI0	708 aa		10.56	□□□□□ -0.72
CPSF7-222	ENST00000544585	KRI1	Q8N9T8	703 aa	Known RBP	10.55	□□□□□ -0.72
CPSF7-222	ENST00000544585	MAPKBP1	O60336	1514 aa		10.54	□□□□□ -0.72
CPSF7-222	ENST00000544585	MKRN3	Q13064	507 aa	Known RBP	10.54	□□□□□ -0.72
CPSF7-222	ENST00000544585	GPIHBP1	Q8IV16	184 aa		10.54	□□□□□ -0.72
CPSF7-222	ENST00000544585	TMEM106C	Q9BVX2	250 aa		10.54	□□□□□ -0.72
CPSF7-222	ENST00000544585	TOP2B	Q02880	1626 aa		10.53	□□□□□ -0.72
CPSF7-222	ENST00000544585	RBM26	Q5T8P6	1007 aa	Known RBP	10.52	□□□□□ -0.73
CPSF7-222	ENST00000544585	LMTK3	Q96Q04	1460 aa		10.51	□□□□□ -0.73
CPSF7-222	ENST00000544585	KIAA0586	Q9BVV6	1533 aa		10.51	□□□□□ -0.73
CPSF7-222	ENST00000544585	PTPRG	P23470	1445 aa		10.5	□□□□□ -0.73
CPSF7-222	ENST00000544585	CD44	P16070	742 aa	Known RBP	10.5	□□□□□ -0.73
CPSF7-222	ENST00000544585	MLLT3	P42568	568 aa	Predicted RBP	10.5	□□□□□ -0.73
CPSF7-222	ENST00000544585	PHF12	Q96QT6	1004 aa		10.5	□□□□□ -0.73
CPSF7-222	ENST00000544585	BIVM-ERCC5	R4GMW8	1640 aa		10.49	□□□□□ -0.73
CPSF7-222	ENST00000544585	SOCS7	O14512	581 aa		10.49	□□□□□ -0.73
CPSF7-222	ENST00000544585	PPP1R15B	Q5SWA1	713 aa		10.49	□□□□□ -0.73
CPSF7-222	ENST00000544585	IGF1R	P08069	1367 aa		10.49	□□□□□ -0.73
CPSF7-222	ENST00000544585	DIP2B	Q9P265	1576 aa		10.48	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms