RNA–Protein interactions for RNA: ENST00000544585.5

CPSF7-222, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 2

Gene CPSF7, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-222ENST00000544585 CHIC1Q5VXU3 224 aa20.27■□□□□ 0.84
CPSF7-222ENST00000544585 AEBP2Q6ZN18 517 aaPredicted RBP19.96■□□□□ 0.79
CPSF7-222ENST00000544585 PHF23Q9BUL5 403 aaPredicted RBP17.89■□□□□ 0.45
CPSF7-222ENST00000544585 SENP3Q9H4L4 574 aaPredicted RBP16.88■□□□□ 0.29
CPSF7-222ENST00000544585 PLPPR3Q6T4P5 718 aa16.85■□□□□ 0.29
CPSF7-222ENST00000544585 ADRA2BP18089 450 aa15.71■□□□□ 0.11
CPSF7-222ENST00000544585 FOXD1Q16676 465 aa15.54■□□□□ 0.08
CPSF7-222ENST00000544585 PPP6R1Q9UPN7 881 aa15.53■□□□□ 0.08
CPSF7-222ENST00000544585 KCNA4P22459 653 aa15.44■□□□□ 0.06
CPSF7-222ENST00000544585 EHMT2Q96KQ7 1210 aa15.35■□□□□ 0.05
CPSF7-222ENST00000544585 PPP4R3CPQ6ZMV5 832 aa14.93□□□□□ -0.02
CPSF7-222ENST00000544585 NISCHQ9Y2I1 1504 aa14.92□□□□□ -0.02
CPSF7-222ENST00000544585 PIAS4Q8N2W9 510 aaPredicted RBP14.89□□□□□ -0.03
CPSF7-222ENST00000544585 SLC4A1APQ9BWU0 796 aaKnown RBP14.88□□□□□ -0.03
CPSF7-222ENST00000544585 NCBP3Q53F19 620 aaKnown RBP14.81□□□□□ -0.04
CPSF7-222ENST00000544585 CSRNP3Q8WYN3 585 aa14.76□□□□□ -0.05
CPSF7-222ENST00000544585 NPM3O75607 178 aaKnown RBP14.53□□□□□ -0.08
CPSF7-222ENST00000544585 CNKSR2Q8WXI2 1034 aa14.35□□□□□ -0.11
CPSF7-222ENST00000544585 SCAF1Q9H7N4 1312 aaKnown RBP14.34□□□□□ -0.11
CPSF7-222ENST00000544585 ZBTB22O15209 634 aa14.19□□□□□ -0.14
CPSF7-222ENST00000544585 MSH5O43196 834 aa14.07□□□□□ -0.16
CPSF7-222ENST00000544585 FOXD4L1Q9NU39 408 aa14.01□□□□□ -0.17
CPSF7-222ENST00000544585 DNAJC5BQ9UF47 199 aa13.95□□□□□ -0.18
CPSF7-222ENST00000544585 MAPK8IP2Q13387 824 aaPredicted RBP13.91□□□□□ -0.18
CPSF7-222ENST00000544585 RNF216Q9NWF9 866 aaPredicted RBP13.87□□□□□ -0.19
CPSF7-222ENST00000544585 ABCC9O60706 1549 aa13.74□□□□□ -0.21
CPSF7-222ENST00000544585 HOXD11P31277 338 aaPredicted RBP13.59□□□□□ -0.23
CPSF7-222ENST00000544585 DMRT2Q9Y5R5 561 aa13.57□□□□□ -0.24
CPSF7-222ENST00000544585 AMER1Q5JTC6 1135 aaPredicted RBP13.53□□□□□ -0.24
CPSF7-222ENST00000544585 SLC4A2P04920 1241 aa13.51□□□□□ -0.25
CPSF7-222ENST00000544585 RTN4Q9NQC3 1192 aaKnown RBP13.48□□□□□ -0.25
CPSF7-222ENST00000544585 SLC24A1O60721 1099 aa13.47□□□□□ -0.25
CPSF7-222ENST00000544585 ATXN8OSP0DMR3 200 aa13.45□□□□□ -0.26
CPSF7-222ENST00000544585 MYCNP04198 464 aaPredicted RBP13.44□□□□□ -0.26
CPSF7-222ENST00000544585 CCDC180Q9P1Z9 1646 aa13.41□□□□□ -0.26
CPSF7-222ENST00000544585 FKBP8Q14318 412 aa13.34□□□□□ -0.27
CPSF7-222ENST00000544585 DCAF8L1A6NGE4 600 aa13.03□□□□□ -0.32
CPSF7-222ENST00000544585 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.02□□□□□ -0.332e-8■■□□□ 11.7
CPSF7-222ENST00000544585 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13□□□□□ -0.33
CPSF7-222ENST00000544585 HNRNPUL2Q1KMD3 747 aaKnown RBP13□□□□□ -0.33
CPSF7-222ENST00000544585 SAMD1Q6SPF0 538 aaPredicted RBP12.97□□□□□ -0.33
CPSF7-222ENST00000544585 ATF5Q9Y2D1 282 aaPredicted RBP12.97□□□□□ -0.33
CPSF7-222ENST00000544585 RB1CC1Q8TDY2 1594 aa12.97□□□□□ -0.33
CPSF7-222ENST00000544585 DCAF8L2P0C7V8 631 aa12.89□□□□□ -0.35
CPSF7-222ENST00000544585 PABPN1Q86U42 306 aaKnown RBP eCLIP12.86□□□□□ -0.35
CPSF7-222ENST00000544585 NACADO15069 1562 aa12.84□□□□□ -0.35
CPSF7-222ENST00000544585 U3KPZ7 1027 aaPredicted RBP12.83□□□□□ -0.36
CPSF7-222ENST00000544585 DNAJC5Q9H3Z4 198 aa12.73□□□□□ -0.37
CPSF7-222ENST00000544585 ZNF219Q9P2Y4 722 aaPredicted RBP12.72□□□□□ -0.37
CPSF7-222ENST00000544585 APLP2Q06481 763 aa12.7□□□□□ -0.38
CPSF7-222ENST00000544585 FBXO3Q9UK99 471 aa12.69□□□□□ -0.38
CPSF7-222ENST00000544585 MYO15BQ96JP2 1530 aa12.61□□□□□ -0.39
CPSF7-222ENST00000544585 SPDYE4A6NLX3 237 aa12.6□□□□□ -0.39
CPSF7-222ENST00000544585 BICRAQ9NZM4 1560 aa12.55□□□□□ -0.4
CPSF7-222ENST00000544585 UNC13AQ9UPW8 1703 aa12.51□□□□□ -0.41
CPSF7-222ENST00000544585 FBLN2P98095 1184 aa12.46□□□□□ -0.41
CPSF7-222ENST00000544585 VASPP50552 380 aaPredicted RBP12.45□□□□□ -0.42
CPSF7-222ENST00000544585 CECR2Q9BXF3 1484 aa12.45□□□□□ -0.42
CPSF7-222ENST00000544585 PLCB2Q00722 1185 aa12.44□□□□□ -0.42
CPSF7-222ENST00000544585 MKRN4PQ13434 485 aaPredicted RBP12.44□□□□□ -0.42
CPSF7-222ENST00000544585 SHROOM4Q9ULL8 1493 aa12.43□□□□□ -0.42
CPSF7-222ENST00000544585 PROM2Q8N271 834 aa12.43□□□□□ -0.42
CPSF7-222ENST00000544585 CC2D2AQ9P2K1 1620 aa12.37□□□□□ -0.43
CPSF7-222ENST00000544585 TRHP20396 242 aaPredicted RBP12.34□□□□□ -0.43
CPSF7-222ENST00000544585 IFNLR1Q8IU57 520 aaPredicted RBP12.33□□□□□ -0.44
CPSF7-222ENST00000544585 DCAF1Q9Y4B6 1507 aa12.32□□□□□ -0.44
CPSF7-222ENST00000544585 HAP1P54257 671 aaPredicted RBP12.3□□□□□ -0.44
CPSF7-222ENST00000544585 POLA2Q14181 598 aa12.3□□□□□ -0.44
CPSF7-222ENST00000544585 EIF4G1Q04637 1599 aaKnown RBP12.29□□□□□ -0.44
CPSF7-222ENST00000544585 ZCCHC6Q5VYS8 1495 aaKnown RBP12.27□□□□□ -0.45
CPSF7-222ENST00000544585 SPINK5Q9NQ38 1064 aaPredicted RBP12.25□□□□□ -0.45
CPSF7-222ENST00000544585 CAPN15O75808 1086 aa12.22□□□□□ -0.45
CPSF7-222ENST00000544585 SCRIBQ14160 1630 aa12.21□□□□□ -0.46
CPSF7-222ENST00000544585 PKD2Q13563 968 aa12.2□□□□□ -0.46
CPSF7-222ENST00000544585 ZBTB12Q9Y330 459 aaPredicted RBP12.18□□□□□ -0.46
CPSF7-222ENST00000544585 BCANQ96GW7 911 aa12.14□□□□□ -0.47
CPSF7-222ENST00000544585 VSIG10Q8N0Z9 540 aa12.12□□□□□ -0.47
CPSF7-222ENST00000544585 KLHL34Q8N239 644 aa12.12□□□□□ -0.47
CPSF7-222ENST00000544585 RNF39Q9H2S5 420 aa12.1□□□□□ -0.47
CPSF7-222ENST00000544585 SPOCK2Q92563 424 aa12.08□□□□□ -0.48
CPSF7-222ENST00000544585 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.08□□□□□ -0.48
CPSF7-222ENST00000544585 ECM2O94769 699 aaPredicted RBP12.05□□□□□ -0.48
CPSF7-222ENST00000544585 ABCB7O75027 752 aa12.03□□□□□ -0.48
CPSF7-222ENST00000544585 BBXQ8WY36 941 aaPredicted RBP12.03□□□□□ -0.48
CPSF7-222ENST00000544585 C1QBPQ07021 282 aaKnown RBP12.02□□□□□ -0.49
CPSF7-222ENST00000544585 STAG3Q9UJ98 1225 aa12.01□□□□□ -0.49
CPSF7-222ENST00000544585 CUX2O14529 1486 aa11.99□□□□□ -0.49
CPSF7-222ENST00000544585 PLCD3Q8N3E9 789 aa11.98□□□□□ -0.49
CPSF7-222ENST00000544585 ZNF692Q9BU19 519 aaPredicted RBP11.98□□□□□ -0.49
CPSF7-222ENST00000544585 PAXIP1Q6ZW49 1069 aaPredicted RBP11.96□□□□□ -0.49
CPSF7-222ENST00000544585 CFAP44Q96MT7 982 aa11.94□□□□□ -0.5
CPSF7-222ENST00000544585 TAOK2Q9UL54 1235 aa11.94□□□□□ -0.5
CPSF7-222ENST00000544585 NCAPD3P42695 1498 aa11.92□□□□□ -0.5
CPSF7-222ENST00000544585 ERCC6Q03468 1493 aa11.92□□□□□ -0.5
CPSF7-222ENST00000544585 PRKCSHP14314 528 aaPredicted RBP11.91□□□□□ -0.5
CPSF7-222ENST00000544585 NPM1P06748 294 aaKnown RBP eCLIP11.9□□□□□ -0.5
CPSF7-222ENST00000544585 SPDYE2BA6NHP3 402 aa11.89□□□□□ -0.51
CPSF7-222ENST00000544585 SPDYE6P0CI01 402 aa11.89□□□□□ -0.51
CPSF7-222ENST00000544585 SPDYE2Q495Y8 402 aa11.89□□□□□ -0.51
CPSF7-222ENST00000544585 MIER1Q8N108 512 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms