RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 SYNJ2O15056 1496 aa14.15□□□□□ -0.14
LMO3-227ENST00000541764 NUP153P49790 1475 aaKnown RBP14.15□□□□□ -0.14
LMO3-227ENST00000541764 TONSLQ96HA7 1378 aa14.15□□□□□ -0.14
LMO3-227ENST00000541764 KDM5BQ9UGL1 1544 aa14.14□□□□□ -0.15
LMO3-227ENST00000541764 NUP160Q12769 1436 aa14.13□□□□□ -0.15
LMO3-227ENST00000541764 CDK11AQ9UQ88 783 aaPredicted RBP14.12□□□□□ -0.15
LMO3-227ENST00000541764 DENND4BO75064 1496 aaPredicted RBP14.11□□□□□ -0.15
LMO3-227ENST00000541764 DNMT1P26358 1616 aaKnown RBP14.11□□□□□ -0.15
LMO3-227ENST00000541764 ERCC6Q03468 1493 aa14.1□□□□□ -0.15
LMO3-227ENST00000541764 CEP170Q5SW79 1584 aa14.09□□□□□ -0.15
LMO3-227ENST00000541764 DAPK1P53355 1430 aa14.09□□□□□ -0.15
LMO3-227ENST00000541764 TROQ12816 1431 aaPredicted RBP14.09□□□□□ -0.15
LMO3-227ENST00000541764 ADCY10Q96PN6 1610 aa14.09□□□□□ -0.15
LMO3-227ENST00000541764 CCER2I3L3R5 266 aa14.07□□□□□ -0.16
LMO3-227ENST00000541764 ABCC5O15440 1437 aa14.07□□□□□ -0.16
LMO3-227ENST00000541764 CARMIL2Q6F5E8 1435 aa14.07□□□□□ -0.16
LMO3-227ENST00000541764 KDM6BO15054 1643 aa14.05□□□□□ -0.16
LMO3-227ENST00000541764 ITSN2Q9NZM3 1697 aa14.04□□□□□ -0.16
LMO3-227ENST00000541764 RRP7BPQ9NSQ0 103 aa14.04□□□□□ -0.16
LMO3-227ENST00000541764 ADGRL2O95490 1459 aa14.03□□□□□ -0.16
LMO3-227ENST00000541764 CHMP7Q8WUX9 453 aaPredicted RBP14.03□□□□□ -0.16
LMO3-227ENST00000541764 DDX10Q13206 875 aaKnown RBP14.02□□□□□ -0.16
LMO3-227ENST00000541764 MPHOSPH9Q99550 1183 aa14.02□□□□□ -0.16
LMO3-227ENST00000541764 DSG3P32926 999 aa14.01□□□□□ -0.17
LMO3-227ENST00000541764 ANKRD30BQ9BXX2 1392 aa14.01□□□□□ -0.17
LMO3-227ENST00000541764 ABCA8O94911 1581 aa14.01□□□□□ -0.17
LMO3-227ENST00000541764 GPATCH8Q9UKJ3 1502 aaKnown RBP14.01□□□□□ -0.17
LMO3-227ENST00000541764 CHIC2Q9UKJ5 165 aa14□□□□□ -0.17
LMO3-227ENST00000541764 JPH4Q96JJ6 628 aa13.99□□□□□ -0.17
LMO3-227ENST00000541764 RPRD2Q5VT52 1461 aaKnown RBP13.99□□□□□ -0.17
LMO3-227ENST00000541764 PLB1Q6P1J6 1458 aa13.99□□□□□ -0.17
LMO3-227ENST00000541764 PRG4Q92954 1404 aaPredicted RBP13.98□□□□□ -0.17
LMO3-227ENST00000541764 CAMSAP2Q08AD1 1489 aa13.98□□□□□ -0.17
LMO3-227ENST00000541764 NCOA1Q15788 1441 aa13.98□□□□□ -0.17
LMO3-227ENST00000541764 ADGBQ8N7X0 1667 aa13.98□□□□□ -0.17
LMO3-227ENST00000541764 ANP32CO43423 234 aa13.97□□□□□ -0.17
LMO3-227ENST00000541764 TRIM52Q96A61 297 aa13.97□□□□□ -0.17
LMO3-227ENST00000541764 SHANK2Q9UPX8 1470 aa13.97□□□□□ -0.17
LMO3-227ENST00000541764 CROCC2H7BZ55 1655 aa13.96□□□□□ -0.17
LMO3-227ENST00000541764 ABCC10Q5T3U5 1492 aa13.95□□□□□ -0.18
LMO3-227ENST00000541764 TEX14Q8IWB6 1497 aa13.94□□□□□ -0.18
LMO3-227ENST00000541764 PZPP20742 1482 aa13.94□□□□□ -0.18
LMO3-227ENST00000541764 CFDP1Q9UEE9 299 aaPredicted RBP13.93□□□□□ -0.18
LMO3-227ENST00000541764 ZNF644Q9H582 1327 aaPredicted RBP13.93□□□□□ -0.18
LMO3-227ENST00000541764 KIF14Q15058 1648 aa13.93□□□□□ -0.18
LMO3-227ENST00000541764 ATP10BO94823 1461 aa13.93□□□□□ -0.18
LMO3-227ENST00000541764 KCNH8Q96L42 1107 aa13.92□□□□□ -0.18
LMO3-227ENST00000541764 EIF4G2P78344 907 aaKnown RBP eCLIP13.91□□□□□ -0.18
LMO3-227ENST00000541764 L3MBTL2Q969R5 705 aa13.91□□□□□ -0.18
LMO3-227ENST00000541764 SUPT16HQ9Y5B9 1047 aaKnown RBP13.91□□□□□ -0.18
LMO3-227ENST00000541764 ANKRD30AQ9BXX3 1397 aa13.91□□□□□ -0.18
LMO3-227ENST00000541764 ARID3CA6NKF2 412 aa13.9□□□□□ -0.18
LMO3-227ENST00000541764 PLEKHD1A6NEE1 506 aa13.89□□□□□ -0.19
LMO3-227ENST00000541764 HSPA5P11021 654 aaKnown RBP13.89□□□□□ -0.19
LMO3-227ENST00000541764 KCNA4P22459 653 aa13.89□□□□□ -0.19
LMO3-227ENST00000541764 CDC42BPAQ5VT25 1732 aa13.88□□□□□ -0.19
LMO3-227ENST00000541764 ARHGEF5Q12774 1597 aa13.88□□□□□ -0.19
LMO3-227ENST00000541764 KDM5DQ9BY66 1539 aa13.88□□□□□ -0.19
LMO3-227ENST00000541764 KIAA1107Q9UPP5 1409 aa13.88□□□□□ -0.19
LMO3-227ENST00000541764 CAPN15O75808 1086 aa13.88□□□□□ -0.19
LMO3-227ENST00000541764 SPATA31E1Q6ZUB1 1445 aa13.88□□□□□ -0.19
LMO3-227ENST00000541764 HIRIP3Q9BW71 556 aaPredicted RBP13.87□□□□□ -0.19
LMO3-227ENST00000541764 SLC4A1APQ9BWU0 796 aaKnown RBP13.87□□□□□ -0.19
LMO3-227ENST00000541764 MBD5Q9P267 1494 aa13.87□□□□□ -0.19
LMO3-227ENST00000541764 WASHC2AQ641Q2 1341 aa13.87□□□□□ -0.19
LMO3-227ENST00000541764 FBLN2P98095 1184 aa13.85□□□□□ -0.19
LMO3-227ENST00000541764 CNTLNQ9NXG0 1405 aa13.84□□□□□ -0.19
LMO3-227ENST00000541764 ANKRD50Q9ULJ7 1429 aa13.84□□□□□ -0.19
LMO3-227ENST00000541764 SHROOM2Q13796 1616 aa13.84□□□□□ -0.19
LMO3-227ENST00000541764 NCBP3Q53F19 620 aaKnown RBP13.84□□□□□ -0.19
LMO3-227ENST00000541764 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
LMO3-227ENST00000541764 PTPRGP23470 1445 aa13.84□□□□□ -0.19
LMO3-227ENST00000541764 RSPH4AQ5TD94 716 aa13.83□□□□□ -0.2
LMO3-227ENST00000541764 U3KPZ7 1027 aaPredicted RBP13.83□□□□□ -0.2
LMO3-227ENST00000541764 C9orf84Q5VXU9 1444 aa13.83□□□□□ -0.2
LMO3-227ENST00000541764 CCDC7Q96M83 1385 aa13.83□□□□□ -0.2
LMO3-227ENST00000541764 POLR1AO95602 1720 aaPredicted RBP13.83□□□□□ -0.2
LMO3-227ENST00000541764 NBPF8Q3BBV2 869 aa13.82□□□□□ -0.2
LMO3-227ENST00000541764 UHRF1BP1Q6BDS2 1440 aa13.81□□□□□ -0.2
LMO3-227ENST00000541764 ARHGEF12Q9NZN5 1544 aa13.8□□□□□ -0.2
LMO3-227ENST00000541764 ARID4BQ4LE39 1312 aaPredicted RBP13.79□□□□□ -0.2
LMO3-227ENST00000541764 PREX2Q70Z35 1606 aa13.79□□□□□ -0.2
LMO3-227ENST00000541764 MAST1Q9Y2H9 1570 aa13.79□□□□□ -0.2
LMO3-227ENST00000541764 CCDC141Q6ZP82 1450 aa13.77□□□□□ -0.2
LMO3-227ENST00000541764 TSPY4P0CV99 314 aa13.77□□□□□ -0.21
LMO3-227ENST00000541764 TSPY10P0CW01 314 aa13.77□□□□□ -0.21
LMO3-227ENST00000541764 ZNF777Q9ULD5 760 aaPredicted RBP13.76□□□□□ -0.21
LMO3-227ENST00000541764 PKD2Q13563 968 aa13.75□□□□□ -0.21
LMO3-227ENST00000541764 SAMD9LQ8IVG5 1584 aa13.75□□□□□ -0.21
LMO3-227ENST00000541764 KIF15Q9NS87 1388 aa13.75□□□□□ -0.21
LMO3-227ENST00000541764 CHD1O14646 1710 aa13.74□□□□□ -0.21
LMO3-227ENST00000541764 CDC42BPBQ9Y5S2 1711 aa13.74□□□□□ -0.21
LMO3-227ENST00000541764 RALGAPBQ86X10 1494 aa13.74□□□□□ -0.21
LMO3-227ENST00000541764 PLEKHH2Q8IVE3 1493 aa13.74□□□□□ -0.21
LMO3-227ENST00000541764 ABCC2Q92887 1545 aa13.74□□□□□ -0.21
LMO3-227ENST00000541764 C11orf95C9JLR9 678 aaPredicted RBP13.74□□□□□ -0.21
LMO3-227ENST00000541764 NUP155O75694 1391 aa13.73□□□□□ -0.21
LMO3-227ENST00000541764 PRKRIP1Q9H875 184 aaPredicted RBP13.73□□□□□ -0.21
LMO3-227ENST00000541764 KIF7Q2M1P5 1343 aa13.72□□□□□ -0.21
LMO3-227ENST00000541764 UHRF1BP1LA0JNW5 1464 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms