RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 LRRIQ1Q96JM4 1722 aa20.12■□□□□ 0.81
SYNE1-236ENST00000537750 HECW1Q76N89 1606 aa20.1■□□□□ 0.81
SYNE1-236ENST00000537750 SPATA31E1Q6ZUB1 1445 aa20.09■□□□□ 0.81
SYNE1-236ENST00000537750 ABCA10Q8WWZ4 1543 aa20.08■□□□□ 0.81
SYNE1-236ENST00000537750 SUPT6HQ7KZ85 1726 aaKnown RBP20.08■□□□□ 0.8
SYNE1-236ENST00000537750 DHX29Q7Z478 1369 aaKnown RBP20.07■□□□□ 0.8
SYNE1-236ENST00000537750 NEFMP07197 916 aa20.07■□□□□ 0.8
SYNE1-236ENST00000537750 CTTNBP2Q8WZ74 1663 aa20.07■□□□□ 0.8
SYNE1-236ENST00000537750 GRIN2BQ13224 1484 aa20.06■□□□□ 0.8
SYNE1-236ENST00000537750 FANCD2Q9BXW9 1451 aa20.05■□□□□ 0.8
SYNE1-236ENST00000537750 UGGT2Q9NYU1 1516 aa20.05■□□□□ 0.8
SYNE1-236ENST00000537750 MAGI3Q5TCQ9 1506 aa20.04■□□□□ 0.8
SYNE1-236ENST00000537750 ANKRD30BQ9BXX2 1392 aa20.04■□□□□ 0.8
SYNE1-236ENST00000537750 POLA1P09884 1462 aaPredicted RBP20.04■□□□□ 0.8
SYNE1-236ENST00000537750 EXOC6Q8TAG9 804 aa20.04■□□□□ 0.8
SYNE1-236ENST00000537750 GCC2Q8IWJ2 1684 aa20.03■□□□□ 0.8
SYNE1-236ENST00000537750 PNISRQ8TF01 805 aaKnown RBP20.03■□□□□ 0.8
SYNE1-236ENST00000537750 EHBP1L1Q8N3D4 1523 aa20.03■□□□□ 0.8
SYNE1-236ENST00000537750 ARID3CA6NKF2 412 aa20.02■□□□□ 0.8
SYNE1-236ENST00000537750 CC2D2AQ9P2K1 1620 aa20.02■□□□□ 0.8
SYNE1-236ENST00000537750 RPRD2Q5VT52 1461 aaKnown RBP20.02■□□□□ 0.8
SYNE1-236ENST00000537750 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.01■□□□□ 0.79
SYNE1-236ENST00000537750 CUL7Q14999 1698 aa20.01■□□□□ 0.79
SYNE1-236ENST00000537750 TEX14Q8IWB6 1497 aa20.01■□□□□ 0.79
SYNE1-236ENST00000537750 PDE4AP27815 886 aa20.01■□□□□ 0.79
SYNE1-236ENST00000537750 ZNF326Q5BKZ1 582 aaKnown RBP20.01■□□□□ 0.79
SYNE1-236ENST00000537750 TMC1Q8TDI8 760 aa20.01■□□□□ 0.79
SYNE1-236ENST00000537750 SLC4A1APQ9BWU0 796 aaKnown RBP19.99■□□□□ 0.79
SYNE1-236ENST00000537750 ARHGEF11O15085 1522 aa19.98■□□□□ 0.79
SYNE1-236ENST00000537750 TCOF1Q13428 1488 aaKnown RBP19.98■□□□□ 0.79
SYNE1-236ENST00000537750 ABCA5Q8WWZ7 1642 aa19.98■□□□□ 0.79
SYNE1-236ENST00000537750 DNMBPQ6XZF7 1577 aa19.97■□□□□ 0.79
SYNE1-236ENST00000537750 TOPBP1Q92547 1522 aa19.97■□□□□ 0.79
SYNE1-236ENST00000537750 SAMD9Q5K651 1589 aa19.97■□□□□ 0.79
SYNE1-236ENST00000537750 RRP1P56182 461 aaKnown RBP19.97■□□□□ 0.79
SYNE1-236ENST00000537750 TCERG1O14776 1098 aaKnown RBP19.96■□□□□ 0.79
SYNE1-236ENST00000537750 BACH2Q9BYV9 841 aa19.95■□□□□ 0.78
SYNE1-236ENST00000537750 SKAP1Q86WV1 359 aa19.93■□□□□ 0.78
SYNE1-236ENST00000537750 POLR1AO95602 1720 aaPredicted RBP19.93■□□□□ 0.78
SYNE1-236ENST00000537750 THOC2Q8NI27 1593 aaKnown RBP19.93■□□□□ 0.78
SYNE1-236ENST00000537750 USP47Q96K76 1375 aa19.92■□□□□ 0.78
SYNE1-236ENST00000537750 USP35Q9P2H5 1018 aa19.92■□□□□ 0.78
SYNE1-236ENST00000537750 TDRD9Q8NDG6 1382 aaKnown RBP19.92■□□□□ 0.78
SYNE1-236ENST00000537750 BCORL1Q5H9F3 1711 aa19.91■□□□□ 0.78
SYNE1-236ENST00000537750 MIA2Q96PC5 1412 aa19.9■□□□□ 0.78
SYNE1-236ENST00000537750 RCAN3Q9UKA8 241 aa19.9■□□□□ 0.78
SYNE1-236ENST00000537750 WASHC2CQ9Y4E1 1318 aa19.89■□□□□ 0.78
SYNE1-236ENST00000537750 BRPF3Q9ULD4 1205 aa19.89■□□□□ 0.77
SYNE1-236ENST00000537750 ZNF644Q9H582 1327 aaPredicted RBP19.88■□□□□ 0.77
SYNE1-236ENST00000537750 PPM1GO15355 546 aaPredicted RBP19.87■□□□□ 0.77
SYNE1-236ENST00000537750 PLIN1O60240 522 aa19.84■□□□□ 0.77
SYNE1-236ENST00000537750 CDK13Q14004 1512 aaKnown RBP19.84■□□□□ 0.77
SYNE1-236ENST00000537750 LRPPRCP42704 1394 aaKnown RBP19.84■□□□□ 0.77
SYNE1-236ENST00000537750 MS4A1P11836 297 aa19.84■□□□□ 0.77
SYNE1-236ENST00000537750 SLC4A3P48751 1232 aa19.84■□□□□ 0.77
SYNE1-236ENST00000537750 DAPK1P53355 1430 aa19.82■□□□□ 0.76
SYNE1-236ENST00000537750 CDCA7LQ96GN5 454 aa19.82■□□□□ 0.76
SYNE1-236ENST00000537750 EPRSP07814 1512 aaKnown RBP19.81■□□□□ 0.76
SYNE1-236ENST00000537750 NESP48681 1621 aa19.81■□□□□ 0.76
SYNE1-236ENST00000537750 ABCC5O15440 1437 aa19.8■□□□□ 0.76
SYNE1-236ENST00000537750 GSE1Q14687 1217 aa19.8■□□□□ 0.76
SYNE1-236ENST00000537750 GAPVD1Q14C86 1478 aa19.79■□□□□ 0.76
SYNE1-236ENST00000537750 ROCK1Q13464 1354 aa19.79■□□□□ 0.76
SYNE1-236ENST00000537750 KIF15Q9NS87 1388 aa19.79■□□□□ 0.76
SYNE1-236ENST00000537750 MYBBP1AQ9BQG0 1328 aaKnown RBP19.78■□□□□ 0.76
SYNE1-236ENST00000537750 NFKBIBQ15653 356 aa19.78■□□□□ 0.76
SYNE1-236ENST00000537750 ARID4BQ4LE39 1312 aaPredicted RBP19.77■□□□□ 0.76
SYNE1-236ENST00000537750 CARD11Q9BXL7 1154 aa19.77■□□□□ 0.76
SYNE1-236ENST00000537750 BRD4O60885 1362 aaPredicted RBP19.77■□□□□ 0.76
SYNE1-236ENST00000537750 MBD5Q9P267 1494 aa19.77■□□□□ 0.75
SYNE1-236ENST00000537750 PZPP20742 1482 aa19.76■□□□□ 0.75
SYNE1-236ENST00000537750 ST20-MTHFSA0A0A6YYL1 179 aa19.75■□□□□ 0.75
SYNE1-236ENST00000537750 PKD2Q13563 968 aa19.75■□□□□ 0.75
SYNE1-236ENST00000537750 CRBNQ96SW2 442 aa19.75■□□□□ 0.75
SYNE1-236ENST00000537750 KDM5CP41229 1560 aa19.75■□□□□ 0.75
SYNE1-236ENST00000537750 FRAT1Q92837 279 aaPredicted RBP19.74■□□□□ 0.75
SYNE1-236ENST00000537750 ROCK2O75116 1388 aaKnown RBP19.74■□□□□ 0.75
SYNE1-236ENST00000537750 DDRGK1Q96HY6 314 aa19.73■□□□□ 0.75
SYNE1-236ENST00000537750 RALBP1Q15311 655 aa19.73■□□□□ 0.75
SYNE1-236ENST00000537750 KDM2AQ9Y2K7 1162 aa19.73■□□□□ 0.75
SYNE1-236ENST00000537750 URB2Q14146 1524 aaKnown RBP19.73■□□□□ 0.75
SYNE1-236ENST00000537750 KIF21AQ7Z4S6 1674 aa19.71■□□□□ 0.75
SYNE1-236ENST00000537750 EIF5BO60841 1220 aaKnown RBP19.7■□□□□ 0.74
SYNE1-236ENST00000537750 LAMC3Q9Y6N6 1575 aa19.69■□□□□ 0.74
SYNE1-236ENST00000537750 PDE3BQ13370 1112 aa19.69■□□□□ 0.74
SYNE1-236ENST00000537750 KIAA1107Q9UPP5 1409 aa19.69■□□□□ 0.74
SYNE1-236ENST00000537750 C20orf194Q5TEA3 1177 aa19.68■□□□□ 0.74
SYNE1-236ENST00000537750 DNMT1P26358 1616 aaKnown RBP19.68■□□□□ 0.74
SYNE1-236ENST00000537750 KIF14Q15058 1648 aa19.67■□□□□ 0.74
SYNE1-236ENST00000537750 NLRP13Q86W25 1043 aa19.67■□□□□ 0.74
SYNE1-236ENST00000537750 DAXXQ9UER7 740 aaPredicted RBP19.66■□□□□ 0.74
SYNE1-236ENST00000537750 ZNF777Q9ULD5 760 aaPredicted RBP19.64■□□□□ 0.73
SYNE1-236ENST00000537750 WDR62O43379 1518 aa19.63■□□□□ 0.73
SYNE1-236ENST00000537750 RALGAPBQ86X10 1494 aa19.62■□□□□ 0.73
SYNE1-236ENST00000537750 KTN1Q86UP2 1357 aaKnown RBP19.62■□□□□ 0.73
SYNE1-236ENST00000537750 FRAT2O75474 233 aaPredicted RBP19.62■□□□□ 0.73
SYNE1-236ENST00000537750 DCAF11Q8TEB1 546 aa19.62■□□□□ 0.73
SYNE1-236ENST00000537750 UBE2Q2Q8WVN8 375 aa19.61■□□□□ 0.73
SYNE1-236ENST00000537750 CC2D1BQ5T0F9 858 aaKnown RBP19.6■□□□□ 0.73
SYNE1-236ENST00000537750 UHRF1BP1Q6BDS2 1440 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms