RNA–Protein interactions for RNA: ENST00000537162.5

CPSF7-217, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 3

Gene CPSF7, Length 801 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-217ENST00000537162 NCOA1Q15788 1441 aa17.15■□□□□ 0.34
CPSF7-217ENST00000537162 RAPGEF2Q9Y4G8 1499 aa17.15■□□□□ 0.34
CPSF7-217ENST00000537162 CTTNBP2Q8WZ74 1663 aa17.14■□□□□ 0.33
CPSF7-217ENST00000537162 PHF23Q9BUL5 403 aaPredicted RBP17.14■□□□□ 0.33
CPSF7-217ENST00000537162 SUPT5HO00267 1087 aaKnown RBP17.12■□□□□ 0.33
CPSF7-217ENST00000537162 GOLGA3Q08378 1498 aa17.12■□□□□ 0.33
CPSF7-217ENST00000537162 C3P01024 1663 aa17.11■□□□□ 0.33
CPSF7-217ENST00000537162 PIP4K2BP78356 416 aa17.09■□□□□ 0.33
CPSF7-217ENST00000537162 SCAF1Q9H7N4 1312 aaKnown RBP17.09■□□□□ 0.33
CPSF7-217ENST00000537162 MAGI2Q86UL8 1455 aa17.09■□□□□ 0.33
CPSF7-217ENST00000537162 CAMSAP1Q5T5Y3 1602 aa17.07■□□□□ 0.32
CPSF7-217ENST00000537162 CFAP74Q9C0B2 1584 aa17.06■□□□□ 0.32
CPSF7-217ENST00000537162 ATP10AO60312 1499 aa17.06■□□□□ 0.32
CPSF7-217ENST00000537162 NCKAP5LQ9HCH0 1330 aa17.05■□□□□ 0.32
CPSF7-217ENST00000537162 C9orf84Q5VXU9 1444 aa17.04■□□□□ 0.32
CPSF7-217ENST00000537162 RGS17Q9UGC6 210 aaPredicted RBP17.04■□□□□ 0.32
CPSF7-217ENST00000537162 P3H3Q8IVL6 736 aa17.02■□□□□ 0.32
CPSF7-217ENST00000537162 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.01■□□□□ 0.31
CPSF7-217ENST00000537162 TRAPPC8Q9Y2L5 1435 aa16.99■□□□□ 0.31
CPSF7-217ENST00000537162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.99■□□□□ 0.31
CPSF7-217ENST00000537162 HNRNPUL2Q1KMD3 747 aaKnown RBP16.99■□□□□ 0.31
CPSF7-217ENST00000537162 RAPGEF6Q8TEU7 1601 aa16.99■□□□□ 0.31
CPSF7-217ENST00000537162 SCAPERQ9BY12 1400 aa16.97■□□□□ 0.31
CPSF7-217ENST00000537162 ALKQ9UM73 1620 aa16.96■□□□□ 0.31
CPSF7-217ENST00000537162 SENP3Q9H4L4 574 aaPredicted RBP16.94■□□□□ 0.3
CPSF7-217ENST00000537162 NUP153P49790 1475 aaKnown RBP16.93■□□□□ 0.3
CPSF7-217ENST00000537162 TOM1O60784 492 aa16.92■□□□□ 0.3
CPSF7-217ENST00000537162 SETD1AO15047 1707 aaKnown RBP16.91■□□□□ 0.3
CPSF7-217ENST00000537162 DIP2CQ9Y2E4 1556 aa16.89■□□□□ 0.29
CPSF7-217ENST00000537162 POTEAQ6S8J7 498 aa16.88■□□□□ 0.29
CPSF7-217ENST00000537162 SUPT6HQ7KZ85 1726 aaKnown RBP16.87■□□□□ 0.29
CPSF7-217ENST00000537162 TCOF1Q13428 1488 aaKnown RBP16.87■□□□□ 0.29
CPSF7-217ENST00000537162 PLEKHD1A6NEE1 506 aa16.84■□□□□ 0.29
CPSF7-217ENST00000537162 PLA2R1Q13018 1463 aa16.84■□□□□ 0.29
CPSF7-217ENST00000537162 ABCA6Q8N139 1617 aa16.84■□□□□ 0.29
CPSF7-217ENST00000537162 ZNF142P52746 1687 aaPredicted RBP16.84■□□□□ 0.29
CPSF7-217ENST00000537162 PKD2Q13563 968 aa16.83■□□□□ 0.28
CPSF7-217ENST00000537162 REREQ9P2R6 1566 aa16.83■□□□□ 0.28
CPSF7-217ENST00000537162 PPP6R1Q9UPN7 881 aa16.83■□□□□ 0.28
CPSF7-217ENST00000537162 MYO3AQ8NEV4 1616 aa16.82■□□□□ 0.28
CPSF7-217ENST00000537162 SAMD9Q5K651 1589 aa16.82■□□□□ 0.28
CPSF7-217ENST00000537162 FAM9AQ8IZU1 332 aaPredicted RBP16.82■□□□□ 0.28
CPSF7-217ENST00000537162 KDM5CP41229 1560 aa16.81■□□□□ 0.28
CPSF7-217ENST00000537162 PLCH2O75038 1416 aa16.81■□□□□ 0.28
CPSF7-217ENST00000537162 AFAP1Q8N556 730 aa16.81■□□□□ 0.28
CPSF7-217ENST00000537162 CPS1P31327 1500 aa16.8■□□□□ 0.28
CPSF7-217ENST00000537162 AGLP35573 1532 aa16.8■□□□□ 0.28
CPSF7-217ENST00000537162 NPATQ14207 1427 aa16.8■□□□□ 0.28
CPSF7-217ENST00000537162 ESF1Q9H501 851 aaKnown RBP16.8■□□□□ 0.28
CPSF7-217ENST00000537162 CEP170BQ9Y4F5 1589 aaPredicted RBP16.78■□□□□ 0.28
CPSF7-217ENST00000537162 SHANK2Q9UPX8 1470 aa16.78■□□□□ 0.28
CPSF7-217ENST00000537162 MROH2AA6NES4 1674 aa16.78■□□□□ 0.28
CPSF7-217ENST00000537162 ZNF518AQ6AHZ1 1483 aa16.77■□□□□ 0.28
CPSF7-217ENST00000537162 PTPRKQ15262 1439 aa16.76■□□□□ 0.27
CPSF7-217ENST00000537162 MYT1LQ9UL68 1186 aa16.75■□□□□ 0.27
CPSF7-217ENST00000537162 CNTLNQ9NXG0 1405 aa16.75■□□□□ 0.27
CPSF7-217ENST00000537162 NEURL4Q96JN8 1562 aa16.74■□□□□ 0.27
CPSF7-217ENST00000537162 ZMYM3Q14202 1370 aa16.74■□□□□ 0.27
CPSF7-217ENST00000537162 MYO5CQ9NQX4 1742 aa16.73■□□□□ 0.27
CPSF7-217ENST00000537162 VWDEQ8N2E2 1590 aa16.72■□□□□ 0.27
CPSF7-217ENST00000537162 PRXQ9BXM0 1461 aa16.72■□□□□ 0.27
CPSF7-217ENST00000537162 POLR1AO95602 1720 aaPredicted RBP16.71■□□□□ 0.27
CPSF7-217ENST00000537162 EFCAB2Q5VUJ9 269 aa16.7■□□□□ 0.26
CPSF7-217ENST00000537162 CDK13Q14004 1512 aaKnown RBP16.7■□□□□ 0.26
CPSF7-217ENST00000537162 SRCAPQ6ZRS2 3230 aa16.7■□□□□ 0.26
CPSF7-217ENST00000537162 CLTCQ00610 1675 aaKnown RBP16.69■□□□□ 0.26
CPSF7-217ENST00000537162 DNMT1P26358 1616 aaKnown RBP16.68■□□□□ 0.26
CPSF7-217ENST00000537162 UPF1Q92900 1129 aaKnown RBP eCLIP16.68■□□□□ 0.26
CPSF7-217ENST00000537162 STRCP1A6NGW2 1772 aa16.68■□□□□ 0.26
CPSF7-217ENST00000537162 MLH3Q9UHC1 1453 aa16.67■□□□□ 0.26
CPSF7-217ENST00000537162 KIDINS220Q9ULH0 1771 aa16.65■□□□□ 0.26
CPSF7-217ENST00000537162 KIF14Q15058 1648 aa16.63■□□□□ 0.25
CPSF7-217ENST00000537162 RNF17Q9BXT8 1623 aaKnown RBP16.63■□□□□ 0.25
CPSF7-217ENST00000537162 ARHGAP5Q13017 1502 aa16.62■□□□□ 0.25
CPSF7-217ENST00000537162 LRRC7Q96NW7 1537 aa16.61■□□□□ 0.25
CPSF7-217ENST00000537162 RANGAP1P46060 587 aaPredicted RBP16.61■□□□□ 0.25
CPSF7-217ENST00000537162 A2ML1A8K2U0 1454 aa16.61■□□□□ 0.25
CPSF7-217ENST00000537162 CDC42BPBQ9Y5S2 1711 aa16.57■□□□□ 0.24
CPSF7-217ENST00000537162 ITSN2Q9NZM3 1697 aa16.56■□□□□ 0.24
CPSF7-217ENST00000537162 ABCC1P33527 1531 aa16.54■□□□□ 0.24
CPSF7-217ENST00000537162 XIRP1Q702N8 1843 aaKnown RBP16.52■□□□□ 0.24
CPSF7-217ENST00000537162 SYNMO15061 1565 aa16.52■□□□□ 0.24
CPSF7-217ENST00000537162 NPHP4O75161 1426 aaPredicted RBP16.51■□□□□ 0.23
CPSF7-217ENST00000537162 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.51■□□□□ 0.231e-11■■□□□ 12.1
CPSF7-217ENST00000537162 IQGAP1P46940 1657 aa16.5■□□□□ 0.23
CPSF7-217ENST00000537162 TRIM52Q96A61 297 aa16.49■□□□□ 0.23
CPSF7-217ENST00000537162 MED14O60244 1454 aa16.48■□□□□ 0.23
CPSF7-217ENST00000537162 DEPDC5O75140 1603 aa16.48■□□□□ 0.23
CPSF7-217ENST00000537162 ANKLE2Q86XL3 938 aa16.47■□□□□ 0.23
CPSF7-217ENST00000537162 SAMD9LQ8IVG5 1584 aa16.47■□□□□ 0.23
CPSF7-217ENST00000537162 PLXNC1O60486 1568 aa16.46■□□□□ 0.23
CPSF7-217ENST00000537162 FBXO31Q5XUX0 539 aaPredicted RBP16.45■□□□□ 0.22
CPSF7-217ENST00000537162 GGT6Q6P531 493 aa16.45■□□□□ 0.22
CPSF7-217ENST00000537162 PREX2Q70Z35 1606 aa16.45■□□□□ 0.22
CPSF7-217ENST00000537162 FAM135BQ49AJ0 1406 aa16.44■□□□□ 0.22
CPSF7-217ENST00000537162 ROBO1Q9Y6N7 1651 aa16.43■□□□□ 0.22
CPSF7-217ENST00000537162 TNRQ92752 1358 aa16.41■□□□□ 0.22
CPSF7-217ENST00000537162 TROQ12816 1431 aaPredicted RBP16.41■□□□□ 0.22
CPSF7-217ENST00000537162 ZC3H13Q5T200 1668 aaKnown RBP16.4■□□□□ 0.22
CPSF7-217ENST00000537162 ATP1B4Q9UN42 357 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms