RNA–Protein interactions for RNA: ENST00000534320.5

PHRF1-206, Transcript of PHD and ring finger domains 1, humanhuman

TSL 5

Gene PHRF1, Length 5,178 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-206ENST00000534320 AQRO60306 1485 aaKnown RBP eCLIP22.48■■□□□ 1.192e-7■■■■■ 30.3
PHRF1-206ENST00000534320 LRRC9Q6ZRR7 1453 aa22.47■■□□□ 1.19
PHRF1-206ENST00000534320 ARAP1Q96P48 1450 aa22.47■■□□□ 1.19
PHRF1-206ENST00000534320 MAPK8IP3Q9UPT6 1336 aa22.46■■□□□ 1.19
PHRF1-206ENST00000534320 SPAG9O60271 1321 aaKnown RBP22.46■■□□□ 1.19
PHRF1-206ENST00000534320 PHLDB1Q86UU1 1377 aa22.46■■□□□ 1.19
PHRF1-206ENST00000534320 FGD6Q6ZV73 1430 aa22.46■■□□□ 1.19
PHRF1-206ENST00000534320 KTN1Q86UP2 1357 aaKnown RBP22.46■■□□□ 1.19
PHRF1-206ENST00000534320 PRXQ9BXM0 1461 aa22.45■■□□□ 1.18
PHRF1-206ENST00000534320 CUX1P39880 1505 aa22.45■■□□□ 1.18
PHRF1-206ENST00000534320 KIF3BO15066 747 aa22.45■■□□□ 1.18
PHRF1-206ENST00000534320 ZBTB7CA1YPR0 619 aa22.44■■□□□ 1.18
PHRF1-206ENST00000534320 BICRAQ9NZM4 1560 aa22.44■■□□□ 1.18
PHRF1-206ENST00000534320 MLECQ14165 292 aa22.44■■□□□ 1.18
PHRF1-206ENST00000534320 CASKIN1Q8WXD9 1431 aa22.43■■□□□ 1.18
PHRF1-206ENST00000534320 NESP48681 1621 aa22.43■■□□□ 1.18
PHRF1-206ENST00000534320 MYOM3Q5VTT5 1437 aa22.43■■□□□ 1.18
PHRF1-206ENST00000534320 CC2D2AQ9P2K1 1620 aa22.42■■□□□ 1.18
PHRF1-206ENST00000534320 PLEKHG5O94827 1062 aa22.41■■□□□ 1.18
PHRF1-206ENST00000534320 RALBP1Q15311 655 aa22.39■■□□□ 1.18
PHRF1-206ENST00000534320 SRPK2P78362 688 aaKnown RBP22.39■■□□□ 1.17
PHRF1-206ENST00000534320 MORC1Q86VD1 984 aa22.38■■□□□ 1.17
PHRF1-206ENST00000534320 U2SURPO15042 1029 aaKnown RBP22.38■■□□□ 1.17
PHRF1-206ENST00000534320 SAFB2Q14151 953 aaKnown RBP eCLIP22.38■■□□□ 1.17
PHRF1-206ENST00000534320 B4GALNT3Q6L9W6 998 aa22.37■■□□□ 1.17
PHRF1-206ENST00000534320 FTSJ3Q8IY81 847 aaKnown RBP22.37■■□□□ 1.17
PHRF1-206ENST00000534320 ERICH6BQ5W0A0 696 aa22.37■■□□□ 1.17
PHRF1-206ENST00000534320 HDGFP51858 240 aaKnown RBP22.36■■□□□ 1.17
PHRF1-206ENST00000534320 GRIN2BQ13224 1484 aa22.36■■□□□ 1.17
PHRF1-206ENST00000534320 ARXQ96QS3 562 aa22.35■■□□□ 1.17
PHRF1-206ENST00000534320 TOPBP1Q92547 1522 aa22.35■■□□□ 1.17
PHRF1-206ENST00000534320 LAS1LQ9Y4W2 734 aaKnown RBP22.34■■□□□ 1.17
PHRF1-206ENST00000534320 FRAT1Q92837 279 aaPredicted RBP22.33■■□□□ 1.17
PHRF1-206ENST00000534320 DDRGK1Q96HY6 314 aa22.33■■□□□ 1.17
PHRF1-206ENST00000534320 TRIM44Q96DX7 344 aaPredicted RBP22.33■■□□□ 1.17
PHRF1-206ENST00000534320 FYCO1Q9BQS8 1478 aa22.33■■□□□ 1.16
PHRF1-206ENST00000534320 STK26Q9P289 416 aa22.33■■□□□ 1.16
PHRF1-206ENST00000534320 NCOA2Q15596 1464 aa22.32■■□□□ 1.16
PHRF1-206ENST00000534320 CCDC144AA2RUR9 1427 aa22.31■■□□□ 1.16
PHRF1-206ENST00000534320 POLA1P09884 1462 aaPredicted RBP22.31■■□□□ 1.16
PHRF1-206ENST00000534320 RRBP1Q9P2E9 1410 aaKnown RBP22.31■■□□□ 1.16
PHRF1-206ENST00000534320 EIF3AQ14152 1382 aaKnown RBP22.3■■□□□ 1.16
PHRF1-206ENST00000534320 ZNF644Q9H582 1327 aaPredicted RBP22.3■■□□□ 1.16
PHRF1-206ENST00000534320 PNNQ9H307 717 aaKnown RBP22.3■■□□□ 1.16
PHRF1-206ENST00000534320 UACAQ9BZF9 1416 aa22.28■■□□□ 1.16
PHRF1-206ENST00000534320 EFCAB5A4FU69 1503 aa22.27■■□□□ 1.16
PHRF1-206ENST00000534320 BECN1Q14457 450 aa22.26■■□□□ 1.15
PHRF1-206ENST00000534320 ST20-MTHFSA0A0A6YYL1 179 aa22.26■■□□□ 1.15
PHRF1-206ENST00000534320 WASHC2CQ9Y4E1 1318 aa22.25■■□□□ 1.15
PHRF1-206ENST00000534320 MRC2Q9UBG0 1479 aa22.25■■□□□ 1.15
PHRF1-206ENST00000534320 PRDM2Q13029 1718 aa22.25■■□□□ 1.15
PHRF1-206ENST00000534320 RGS3P49796 1198 aa22.23■■□□□ 1.15
PHRF1-206ENST00000534320 DNMBPQ6XZF7 1577 aa22.23■■□□□ 1.15
PHRF1-206ENST00000534320 MS4A1P11836 297 aa22.22■■□□□ 1.15
PHRF1-206ENST00000534320 HDGFL2Q7Z4V5 671 aaPredicted RBP22.22■■□□□ 1.15
PHRF1-206ENST00000534320 NLRP13Q86W25 1043 aa22.21■■□□□ 1.15
PHRF1-206ENST00000534320 TRHP20396 242 aaPredicted RBP22.21■■□□□ 1.15
PHRF1-206ENST00000534320 USP47Q96K76 1375 aa22.19■■□□□ 1.14
PHRF1-206ENST00000534320 IFT140Q96RY7 1462 aa22.19■■□□□ 1.14
PHRF1-206ENST00000534320 CDK11BP21127 795 aaKnown RBP22.18■■□□□ 1.14
PHRF1-206ENST00000534320 RCAN3Q9UKA8 241 aa22.18■■□□□ 1.14
PHRF1-206ENST00000534320 KIF15Q9NS87 1388 aa22.18■■□□□ 1.14
PHRF1-206ENST00000534320 PEG3Q9GZU2 1588 aa22.17■■□□□ 1.14
PHRF1-206ENST00000534320 LMOD2Q6P5Q4 547 aa22.17■■□□□ 1.14
PHRF1-206ENST00000534320 PRKRIP1Q9H875 184 aaPredicted RBP22.16■■□□□ 1.14
PHRF1-206ENST00000534320 CHMP4BQ9H444 224 aaKnown RBP22.15■■□□□ 1.14
PHRF1-206ENST00000534320 NAP1L5Q96NT1 182 aaPredicted RBP22.15■■□□□ 1.14
PHRF1-206ENST00000534320 TIAM1Q13009 1591 aa22.14■■□□□ 1.13
PHRF1-206ENST00000534320 NUTM2DQ5VT03 806 aaPredicted RBP22.14■■□□□ 1.13
PHRF1-206ENST00000534320 U2AF1L5P0DN76 240 aaPredicted RBP22.13■■□□□ 1.13
PHRF1-206ENST00000534320 HAP1P54257 671 aaPredicted RBP22.13■■□□□ 1.13
PHRF1-206ENST00000534320 U2AF1Q01081 240 aaKnown RBP eCLIP22.13■■□□□ 1.13
PHRF1-206ENST00000534320 OSCARQ8IYS5 282 aa22.12■■□□□ 1.13
PHRF1-206ENST00000534320 SOX12O15370 315 aa22.12■■□□□ 1.13
PHRF1-206ENST00000534320 ANKRD50Q9ULJ7 1429 aa22.12■■□□□ 1.13
PHRF1-206ENST00000534320 A0A0G2JS52 829 aa22.11■■□□□ 1.13
PHRF1-206ENST00000534320 MYBBP1AQ9BQG0 1328 aaKnown RBP22.11■■□□□ 1.13
PHRF1-206ENST00000534320 EHBP1L1Q8N3D4 1523 aa22.1■■□□□ 1.13
PHRF1-206ENST00000534320 ABCA10Q8WWZ4 1543 aa22.1■■□□□ 1.13
PHRF1-206ENST00000534320 PANK3Q9H999 370 aa22.1■■□□□ 1.13
PHRF1-206ENST00000534320 TRAK1Q9UPV9 953 aa22.09■■□□□ 1.13
PHRF1-206ENST00000534320 RTN4Q9NQC3 1192 aaKnown RBP22.08■■□□□ 1.13
PHRF1-206ENST00000534320 TERF2IPQ9NYB0 399 aa22.07■■□□□ 1.12
PHRF1-206ENST00000534320 UNC13AQ9UPW8 1703 aa22.07■■□□□ 1.12
PHRF1-206ENST00000534320 PDE3BQ13370 1112 aa22.06■■□□□ 1.12
PHRF1-206ENST00000534320 RBM19Q9Y4C8 960 aaKnown RBP22.06■■□□□ 1.12
PHRF1-206ENST00000534320 CASC1Q6TDU7 716 aa22.05■■□□□ 1.12
PHRF1-206ENST00000534320 PRG4Q92954 1404 aaPredicted RBP22.05■■□□□ 1.12
PHRF1-206ENST00000534320 NOP58Q9Y2X3 529 aaKnown RBP22.05■■□□□ 1.12
PHRF1-206ENST00000534320 SYNJ2O15056 1496 aa22.04■■□□□ 1.12
PHRF1-206ENST00000534320 SNAPC4Q5SXM2 1469 aa22.04■■□□□ 1.12
PHRF1-206ENST00000534320 GOLGA6L22H0YM25 854 aa22.04■■□□□ 1.12
PHRF1-206ENST00000534320 NCLP19338 710 aaKnown RBP22.03■■□□□ 1.12
PHRF1-206ENST00000534320 GOLGA2Q08379 1002 aa22.03■■□□□ 1.12
PHRF1-206ENST00000534320 MIA2Q96PC5 1412 aa22.03■■□□□ 1.12
PHRF1-206ENST00000534320 LAMC3Q9Y6N6 1575 aa22.02■■□□□ 1.12
PHRF1-206ENST00000534320 HECW1Q76N89 1606 aa22.01■■□□□ 1.11
PHRF1-206ENST00000534320 CCDC7Q96M83 1385 aa22.01■■□□□ 1.11
PHRF1-206ENST00000534320 CCDC146Q8IYE0 955 aa22.01■■□□□ 1.11
PHRF1-206ENST00000534320 CYB5RLQ6IPT4 315 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms