RNA–Protein interactions for RNA: ENST00000526955.1

PKNOX2-202, Transcript of PBX/knotted 1 homeobox 2, humanhuman

TSL 1 (best)

Gene PKNOX2, Length 4,531 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX2-202ENST00000526955 DDRGK1Q96HY6 314 aa13.65□□□□□ -0.22
PKNOX2-202ENST00000526955 MYOM3Q5VTT5 1437 aa13.64□□□□□ -0.23
PKNOX2-202ENST00000526955 CCDC7Q96M83 1385 aa13.64□□□□□ -0.23
PKNOX2-202ENST00000526955 CADPSQ9ULU8 1353 aa13.63□□□□□ -0.23
PKNOX2-202ENST00000526955 HDGFP51858 240 aaKnown RBP13.62□□□□□ -0.23
PKNOX2-202ENST00000526955 MPHOSPH9Q99550 1183 aa13.61□□□□□ -0.23
PKNOX2-202ENST00000526955 USP35Q9P2H5 1018 aa13.61□□□□□ -0.23
PKNOX2-202ENST00000526955 LMOD2Q6P5Q4 547 aa13.61□□□□□ -0.23
PKNOX2-202ENST00000526955 TCERG1O14776 1098 aaKnown RBP13.6□□□□□ -0.23
PKNOX2-202ENST00000526955 CFDP1Q9UEE9 299 aaPredicted RBP13.6□□□□□ -0.23
PKNOX2-202ENST00000526955 L3MBTL2Q969R5 705 aa13.6□□□□□ -0.23
PKNOX2-202ENST00000526955 PTPN23Q9H3S7 1636 aa13.6□□□□□ -0.23
PKNOX2-202ENST00000526955 MLECQ14165 292 aa13.6□□□□□ -0.23
PKNOX2-202ENST00000526955 SENP3Q9H4L4 574 aaPredicted RBP13.59□□□□□ -0.23
PKNOX2-202ENST00000526955 NAIPQ13075 1403 aa13.59□□□□□ -0.23
PKNOX2-202ENST00000526955 SMG6Q86US8 1419 aaKnown RBP13.58□□□□□ -0.24
PKNOX2-202ENST00000526955 NCOA2Q15596 1464 aa13.58□□□□□ -0.24
PKNOX2-202ENST00000526955 KDM2AQ9Y2K7 1162 aa13.56□□□□□ -0.24
PKNOX2-202ENST00000526955 PDS5BQ9NTI5 1447 aa13.56□□□□□ -0.24
PKNOX2-202ENST00000526955 EHBP1L1Q8N3D4 1523 aa13.56□□□□□ -0.24
PKNOX2-202ENST00000526955 ROCK2O75116 1388 aaKnown RBP13.56□□□□□ -0.24
PKNOX2-202ENST00000526955 SUPT6HQ7KZ85 1726 aaKnown RBP13.54□□□□□ -0.24
PKNOX2-202ENST00000526955 NCOA1Q15788 1441 aa13.53□□□□□ -0.24
PKNOX2-202ENST00000526955 KIF7Q2M1P5 1343 aa13.51□□□□□ -0.25
PKNOX2-202ENST00000526955 PAK3O75914 559 aaPredicted RBP13.51□□□□□ -0.25
PKNOX2-202ENST00000526955 MS4A1P11836 297 aa13.51□□□□□ -0.25
PKNOX2-202ENST00000526955 CUL7Q14999 1698 aa13.5□□□□□ -0.25
PKNOX2-202ENST00000526955 LAS1LQ9Y4W2 734 aaKnown RBP13.5□□□□□ -0.25
PKNOX2-202ENST00000526955 AKNAQ7Z591 1439 aa13.49□□□□□ -0.25
PKNOX2-202ENST00000526955 CC2D2AQ9P2K1 1620 aa13.49□□□□□ -0.25
PKNOX2-202ENST00000526955 PDE3BQ13370 1112 aa13.49□□□□□ -0.25
PKNOX2-202ENST00000526955 RALBP1Q15311 655 aa13.49□□□□□ -0.25
PKNOX2-202ENST00000526955 CCDC184Q52MB2 194 aa13.49□□□□□ -0.25
PKNOX2-202ENST00000526955 NPHP1O15259 732 aa13.48□□□□□ -0.25
PKNOX2-202ENST00000526955 ARXQ96QS3 562 aa13.48□□□□□ -0.25
PKNOX2-202ENST00000526955 FANCD2Q9BXW9 1451 aa13.48□□□□□ -0.25
PKNOX2-202ENST00000526955 THOC2Q8NI27 1593 aaKnown RBP13.48□□□□□ -0.25
PKNOX2-202ENST00000526955 POGKQ9P215 609 aa13.47□□□□□ -0.25
PKNOX2-202ENST00000526955 UBE2Q2Q8WVN8 375 aa13.47□□□□□ -0.25
PKNOX2-202ENST00000526955 RCAN3Q9UKA8 241 aa13.47□□□□□ -0.25
PKNOX2-202ENST00000526955 PRDM2Q13029 1718 aa13.47□□□□□ -0.25
PKNOX2-202ENST00000526955 KIF15Q9NS87 1388 aa13.46□□□□□ -0.25
PKNOX2-202ENST00000526955 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.46□□□□□ -0.25
PKNOX2-202ENST00000526955 MIA2Q96PC5 1412 aa13.46□□□□□ -0.26
PKNOX2-202ENST00000526955 KTN1Q86UP2 1357 aaKnown RBP13.45□□□□□ -0.26
PKNOX2-202ENST00000526955 ABCA10Q8WWZ4 1543 aa13.45□□□□□ -0.26
PKNOX2-202ENST00000526955 RRP1P56182 461 aaKnown RBP13.45□□□□□ -0.26
PKNOX2-202ENST00000526955 FOXD1Q16676 465 aa13.45□□□□□ -0.26
PKNOX2-202ENST00000526955 PDE4AP27815 886 aa13.45□□□□□ -0.26
PKNOX2-202ENST00000526955 PTPRKQ15262 1439 aa13.44□□□□□ -0.26
PKNOX2-202ENST00000526955 RGL3Q3MIN7 710 aa13.44□□□□□ -0.26
PKNOX2-202ENST00000526955 CARD11Q9BXL7 1154 aa13.44□□□□□ -0.26
PKNOX2-202ENST00000526955 CARMIL2Q6F5E8 1435 aa13.44□□□□□ -0.26
PKNOX2-202ENST00000526955 HECW1Q76N89 1606 aa13.43□□□□□ -0.26
PKNOX2-202ENST00000526955 USP47Q96K76 1375 aa13.43□□□□□ -0.26
PKNOX2-202ENST00000526955 WDR43Q15061 677 aaKnown RBP eCLIP13.43□□□□□ -0.26
PKNOX2-202ENST00000526955 MYBBP1AQ9BQG0 1328 aaKnown RBP13.42□□□□□ -0.26
PKNOX2-202ENST00000526955 DNMBPQ6XZF7 1577 aa13.42□□□□□ -0.26
PKNOX2-202ENST00000526955 CTTNBP2Q8WZ74 1663 aa13.42□□□□□ -0.26
PKNOX2-202ENST00000526955 RTN4Q9NQC3 1192 aaKnown RBP13.42□□□□□ -0.26
PKNOX2-202ENST00000526955 RAD54L2Q9Y4B4 1467 aa13.42□□□□□ -0.26
PKNOX2-202ENST00000526955 CDCA8Q53HL2 280 aa13.42□□□□□ -0.26
PKNOX2-202ENST00000526955 OSCARQ8IYS5 282 aa13.42□□□□□ -0.26
PKNOX2-202ENST00000526955 PODXL2Q9NZ53 605 aa13.42□□□□□ -0.26
PKNOX2-202ENST00000526955 KANK1Q14678 1352 aa13.41□□□□□ -0.26
PKNOX2-202ENST00000526955 SALL2Q9Y467 1007 aaPredicted RBP13.41□□□□□ -0.26
PKNOX2-202ENST00000526955 ANO8Q9HCE9 1232 aaPredicted RBP13.41□□□□□ -0.26
PKNOX2-202ENST00000526955 BRD4O60885 1362 aaPredicted RBP13.4□□□□□ -0.26
PKNOX2-202ENST00000526955 SNAPC4Q5SXM2 1469 aa13.4□□□□□ -0.26
PKNOX2-202ENST00000526955 RPRD2Q5VT52 1461 aaKnown RBP13.4□□□□□ -0.26
PKNOX2-202ENST00000526955 CYB5RLQ6IPT4 315 aa13.4□□□□□ -0.27
PKNOX2-202ENST00000526955 GGT6Q6P531 493 aa13.39□□□□□ -0.27
PKNOX2-202ENST00000526955 ROCK1Q13464 1354 aa13.39□□□□□ -0.27
PKNOX2-202ENST00000526955 C11orf95C9JLR9 678 aaPredicted RBP13.39□□□□□ -0.27
PKNOX2-202ENST00000526955 UGGT2Q9NYU1 1516 aa13.39□□□□□ -0.27
PKNOX2-202ENST00000526955 NBPF8Q3BBV2 869 aa13.38□□□□□ -0.27
PKNOX2-202ENST00000526955 TCOF1Q13428 1488 aaKnown RBP13.38□□□□□ -0.27
PKNOX2-202ENST00000526955 NLRP13Q86W25 1043 aa13.38□□□□□ -0.27
PKNOX2-202ENST00000526955 ANKRD30BQ9BXX2 1392 aa13.38□□□□□ -0.27
PKNOX2-202ENST00000526955 EXOC6Q8TAG9 804 aa13.38□□□□□ -0.27
PKNOX2-202ENST00000526955 GRIN2BQ13224 1484 aa13.37□□□□□ -0.27
PKNOX2-202ENST00000526955 RNF123Q5XPI4 1314 aa13.37□□□□□ -0.27
PKNOX2-202ENST00000526955 PNISRQ8TF01 805 aaKnown RBP13.37□□□□□ -0.27
PKNOX2-202ENST00000526955 POLA1P09884 1462 aaPredicted RBP13.37□□□□□ -0.27
PKNOX2-202ENST00000526955 GCC2Q8IWJ2 1684 aa13.36□□□□□ -0.27
PKNOX2-202ENST00000526955 GSE1Q14687 1217 aa13.36□□□□□ -0.27
PKNOX2-202ENST00000526955 CFAP53Q96M91 514 aa13.36□□□□□ -0.27
PKNOX2-202ENST00000526955 EFCAB2Q5VUJ9 269 aa13.36□□□□□ -0.27
PKNOX2-202ENST00000526955 TOPBP1Q92547 1522 aa13.35□□□□□ -0.27
PKNOX2-202ENST00000526955 BACH2Q9BYV9 841 aa13.35□□□□□ -0.27
PKNOX2-202ENST00000526955 GAPVD1Q14C86 1478 aa13.34□□□□□ -0.27
PKNOX2-202ENST00000526955 PKD2Q13563 968 aa13.34□□□□□ -0.27
PKNOX2-202ENST00000526955 TDRD9Q8NDG6 1382 aaKnown RBP13.34□□□□□ -0.27
PKNOX2-202ENST00000526955 SENP3-EIF4A1A0A087X0R7 540 aa13.33□□□□□ -0.27
PKNOX2-202ENST00000526955 BECN1Q14457 450 aa13.33□□□□□ -0.27
PKNOX2-202ENST00000526955 GLIPR1L2Q4G1C9 344 aa13.33□□□□□ -0.28
PKNOX2-202ENST00000526955 ANKRD30AQ9BXX3 1397 aa13.33□□□□□ -0.28
PKNOX2-202ENST00000526955 KIF21AQ7Z4S6 1674 aa13.31□□□□□ -0.28
PKNOX2-202ENST00000526955 DAPK1P53355 1430 aa13.31□□□□□ -0.28
PKNOX2-202ENST00000526955 UPF2Q9HAU5 1272 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms