RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 PRDM2Q13029 1718 aa8.94□□□□□ -0.98
CD44-218ENST00000525469 EIF4G3O43432 1585 aaKnown RBP8.93□□□□□ -0.98
CD44-218ENST00000525469 RNF25Q96BH1 459 aaPredicted RBP8.92□□□□□ -0.98
CD44-218ENST00000525469 OCEL1Q9H607 264 aa8.92□□□□□ -0.98
CD44-218ENST00000525469 CABP2Q9NPB3 220 aa8.91□□□□□ -0.98
CD44-218ENST00000525469 SCUBE2Q9NQ36 999 aa8.91□□□□□ -0.98
CD44-218ENST00000525469 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.89□□□□□ -0.99
CD44-218ENST00000525469 IRX5P78411 483 aaPredicted RBP8.89□□□□□ -0.99
CD44-218ENST00000525469 ZFP91Q96JP5 570 aaPredicted RBP8.89□□□□□ -0.99
CD44-218ENST00000525469 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.87□□□□□ -0.99
CD44-218ENST00000525469 COLQQ9Y215 455 aaPredicted RBP8.87□□□□□ -0.99
CD44-218ENST00000525469 AQRO60306 1485 aaKnown RBP eCLIP8.86□□□□□ -0.99
CD44-218ENST00000525469 STK25O00506 426 aa8.86□□□□□ -0.99
CD44-218ENST00000525469 RGL2O15211 777 aa8.86□□□□□ -0.99
CD44-218ENST00000525469 ABCC8Q09428 1581 aa8.86□□□□□ -0.99
CD44-218ENST00000525469 TOPBP1Q92547 1522 aa8.85□□□□□ -0.99
CD44-218ENST00000525469 G3V3G9 751 aa8.85□□□□□ -0.99
CD44-218ENST00000525469 L3MBTL3Q96JM7 780 aaPredicted RBP8.84□□□□□ -0.99
CD44-218ENST00000525469 BCL11BQ9C0K0 894 aaPredicted RBP8.84□□□□□ -0.99
CD44-218ENST00000525469 STK24Q9Y6E0 443 aa8.84□□□□□ -0.99
CD44-218ENST00000525469 SYNJ1O43426 1573 aa8.83□□□□□ -1
CD44-218ENST00000525469 POTEFA5A3E0 1075 aa8.83□□□□□ -1
CD44-218ENST00000525469 SOX12O15370 315 aa8.83□□□□□ -1
CD44-218ENST00000525469 POTEB2H3BUK9 544 aa8.82□□□□□ -1
CD44-218ENST00000525469 CHMP7Q8WUX9 453 aaPredicted RBP8.82□□□□□ -1
CD44-218ENST00000525469 AMER1Q5JTC6 1135 aaPredicted RBP8.81□□□□□ -1
CD44-218ENST00000525469 EFCAB3Q8N7B9 438 aa8.81□□□□□ -1
CD44-218ENST00000525469 CLASP1Q7Z460 1538 aa8.8□□□□□ -1
CD44-218ENST00000525469 TARBP1Q13395 1621 aaKnown RBP8.8□□□□□ -1
CD44-218ENST00000525469 DNMBPQ6XZF7 1577 aa8.79□□□□□ -1
CD44-218ENST00000525469 GAPVD1Q14C86 1478 aa8.79□□□□□ -1
CD44-218ENST00000525469 C3orf67Q6ZVT6 689 aa8.79□□□□□ -1
CD44-218ENST00000525469 PDCD7Q8N8D1 485 aaKnown RBP8.79□□□□□ -1
CD44-218ENST00000525469 OTUD5Q96G74 571 aa8.79□□□□□ -1
CD44-218ENST00000525469 TOP2AP11388 1531 aaKnown RBP8.78□□□□□ -1
CD44-218ENST00000525469 NLRP6P59044 892 aa8.77□□□□□ -1.01
CD44-218ENST00000525469 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.77□□□□□ -1.01
CD44-218ENST00000525469 HS6ST3Q8IZP7 471 aa8.76□□□□□ -1.01
CD44-218ENST00000525469 SNAPC4Q5SXM2 1469 aa8.76□□□□□ -1.01
CD44-218ENST00000525469 KIF13AQ9H1H9 1805 aa8.75□□□□□ -1.01
CD44-218ENST00000525469 TDRD9Q8NDG6 1382 aaKnown RBP8.74□□□□□ -1.01
CD44-218ENST00000525469 SLC24A1O60721 1099 aa8.74□□□□□ -1.01
CD44-218ENST00000525469 POTEJP0CG39 1038 aa8.74□□□□□ -1.01
CD44-218ENST00000525469 CHGAP10645 457 aaKnown RBP8.73□□□□□ -1.01
CD44-218ENST00000525469 BOLA1Q9Y3E2 137 aa8.73□□□□□ -1.01
CD44-218ENST00000525469 POLA1P09884 1462 aaPredicted RBP8.72□□□□□ -1.01
CD44-218ENST00000525469 MAGI1Q96QZ7 1491 aaPredicted RBP8.72□□□□□ -1.01
CD44-218ENST00000525469 KDM4FA0A1W2PPD8 638 aa8.72□□□□□ -1.01
CD44-218ENST00000525469 PLSCR2Q9NRY7 297 aa8.72□□□□□ -1.01
CD44-218ENST00000525469 RYDENQ9NUL5 291 aaKnown RBP8.72□□□□□ -1.01
CD44-218ENST00000525469 SOGA1O94964 1423 aa8.71□□□□□ -1.01
CD44-218ENST00000525469 SLAIN1Q8ND83 568 aa8.71□□□□□ -1.02
CD44-218ENST00000525469 PHF8Q9UPP1 1060 aa8.71□□□□□ -1.02
CD44-218ENST00000525469 WDR97A6NE52 1622 aa8.71□□□□□ -1.02
CD44-218ENST00000525469 RAD54L2Q9Y4B4 1467 aa8.7□□□□□ -1.02
CD44-218ENST00000525469 SYNJ2O15056 1496 aa8.7□□□□□ -1.02
CD44-218ENST00000525469 CCDC88BA6NC98 1476 aa8.68□□□□□ -1.02
CD44-218ENST00000525469 GRIN2BQ13224 1484 aa8.68□□□□□ -1.02
CD44-218ENST00000525469 SNPHO15079 494 aa8.67□□□□□ -1.02
CD44-218ENST00000525469 DPY19L2Q6NUT2 758 aa8.67□□□□□ -1.02
CD44-218ENST00000525469 MFRPQ9BY79 579 aa8.67□□□□□ -1.02
CD44-218ENST00000525469 FAM69CQ0P6D2 419 aa8.66□□□□□ -1.02
CD44-218ENST00000525469 FBXO22Q8NEZ5 403 aa8.66□□□□□ -1.02
CD44-218ENST00000525469 PBRM1Q86U86 1689 aa8.65□□□□□ -1.02
CD44-218ENST00000525469 MYT1Q01538 1121 aa8.65□□□□□ -1.02
CD44-218ENST00000525469 TSPOAP1O95153 1857 aa8.65□□□□□ -1.02
CD44-218ENST00000525469 KDM6BO15054 1643 aa8.65□□□□□ -1.03
CD44-218ENST00000525469 MICALL2Q8IY33 904 aa8.64□□□□□ -1.03
CD44-218ENST00000525469 MS4A4AQ96JQ5 239 aa8.64□□□□□ -1.03
CD44-218ENST00000525469 TMEM121BQ9BXQ6 578 aaPredicted RBP8.64□□□□□ -1.03
CD44-218ENST00000525469 ERCC6L2Q5T890 1561 aa8.64□□□□□ -1.03
CD44-218ENST00000525469 RTN4Q9NQC3 1192 aaKnown RBP8.62□□□□□ -1.03
CD44-218ENST00000525469 FGD5Q6ZNL6 1462 aa8.62□□□□□ -1.03
CD44-218ENST00000525469 FBXO41Q8TF61 875 aa8.61□□□□□ -1.03
CD44-218ENST00000525469 CEP170Q5SW79 1584 aa8.61□□□□□ -1.03
CD44-218ENST00000525469 ABCC10Q5T3U5 1492 aa8.59□□□□□ -1.03
CD44-218ENST00000525469 HECW2Q9P2P5 1572 aa8.59□□□□□ -1.03
CD44-218ENST00000525469 FAM163AQ96GL9 167 aaPredicted RBP8.56□□□□□ -1.04
CD44-218ENST00000525469 ADGRL1O94910 1474 aa8.56□□□□□ -1.04
CD44-218ENST00000525469 GRIN2AQ12879 1464 aa8.56□□□□□ -1.04
CD44-218ENST00000525469 DIP2BQ9P265 1576 aa8.56□□□□□ -1.04
CD44-218ENST00000525469 SHROOM2Q13796 1616 aa8.54□□□□□ -1.04
CD44-218ENST00000525469 RIMBP2O15034 1052 aa8.54□□□□□ -1.04
CD44-218ENST00000525469 DOK7Q18PE1 504 aa8.54□□□□□ -1.04
CD44-218ENST00000525469 MAPKBP1O60336 1514 aa8.54□□□□□ -1.04
CD44-218ENST00000525469 LMTK3Q96Q04 1460 aa8.53□□□□□ -1.04
CD44-218ENST00000525469 NKX1-1Q15270 411 aaPredicted RBP8.52□□□□□ -1.05
CD44-218ENST00000525469 TMC2Q8TDI7 906 aa8.52□□□□□ -1.05
CD44-218ENST00000525469 CUX1P39880 1505 aa8.52□□□□□ -1.05
CD44-218ENST00000525469 NUP160Q12769 1436 aa8.52□□□□□ -1.05
CD44-218ENST00000525469 PRG4Q92954 1404 aaPredicted RBP8.52□□□□□ -1.05
CD44-218ENST00000525469 ZNF710Q8N1W2 664 aa8.51□□□□□ -1.05
CD44-218ENST00000525469 BBXQ8WY36 941 aaPredicted RBP8.51□□□□□ -1.05
CD44-218ENST00000525469 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.51□□□□□ -1.05
CD44-218ENST00000525469 ABCA5Q8WWZ7 1642 aa8.51□□□□□ -1.05
CD44-218ENST00000525469 JPH4Q96JJ6 628 aa8.49□□□□□ -1.05
CD44-218ENST00000525469 ABCA10Q8WWZ4 1543 aa8.49□□□□□ -1.05
CD44-218ENST00000525469 ADAMTS12P58397 1594 aa8.48□□□□□ -1.05
CD44-218ENST00000525469 PPP1R37O75864 691 aa8.48□□□□□ -1.05
CD44-218ENST00000525469 POTEMA6NI47 508 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms