RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 AEBP2Q6ZN18 517 aaPredicted RBP18.46■□□□□ 0.55
CD44-218ENST00000525469 CHIC1Q5VXU3 224 aa17.95■□□□□ 0.46
CD44-218ENST00000525469 SENP3Q9H4L4 574 aaPredicted RBP15.9■□□□□ 0.14
CD44-218ENST00000525469 PHF23Q9BUL5 403 aaPredicted RBP15.64■□□□□ 0.09
CD44-218ENST00000525469 FOXD1Q16676 465 aa14.64□□□□□ -0.07
CD44-218ENST00000525469 PLPPR3Q6T4P5 718 aa14.56□□□□□ -0.08
CD44-218ENST00000525469 ADRA2BP18089 450 aa13.87□□□□□ -0.19
CD44-218ENST00000525469 PIAS4Q8N2W9 510 aaPredicted RBP13.85□□□□□ -0.19
CD44-218ENST00000525469 PPP6R1Q9UPN7 881 aa13.85□□□□□ -0.19
CD44-218ENST00000525469 MSH5O43196 834 aa13.75□□□□□ -0.21
CD44-218ENST00000525469 POTEDQ86YR6 584 aa13.38□□□□□ -0.27
CD44-218ENST00000525469 SCAF1Q9H7N4 1312 aaKnown RBP12.91□□□□□ -0.34
CD44-218ENST00000525469 PPP4R3CPQ6ZMV5 832 aa12.74□□□□□ -0.37
CD44-218ENST00000525469 MAPK8IP2Q13387 824 aaPredicted RBP12.6□□□□□ -0.39
CD44-218ENST00000525469 DMRT2Q9Y5R5 561 aa12.6□□□□□ -0.39
CD44-218ENST00000525469 NCBP3Q53F19 620 aaKnown RBP12.48□□□□□ -0.41
CD44-218ENST00000525469 CNKSR2Q8WXI2 1034 aa12.48□□□□□ -0.41
CD44-218ENST00000525469 RNF216Q9NWF9 866 aaPredicted RBP12.28□□□□□ -0.44
CD44-218ENST00000525469 HOXD11P31277 338 aaPredicted RBP12.25□□□□□ -0.45
CD44-218ENST00000525469 KCNA4P22459 653 aa12.16□□□□□ -0.46
CD44-218ENST00000525469 NPM3O75607 178 aaKnown RBP12.14□□□□□ -0.47
CD44-218ENST00000525469 DCAF8L1A6NGE4 600 aa12.11□□□□□ -0.47
CD44-218ENST00000525469 DNAJC5BQ9UF47 199 aa11.88□□□□□ -0.51
CD44-218ENST00000525469 NISCHQ9Y2I1 1504 aa11.75□□□□□ -0.53
CD44-218ENST00000525469 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.73□□□□□ -0.53
CD44-218ENST00000525469 RNF39Q9H2S5 420 aa11.66□□□□□ -0.54
CD44-218ENST00000525469 SLC4A1APQ9BWU0 796 aaKnown RBP11.62□□□□□ -0.55
CD44-218ENST00000525469 C1QBPQ07021 282 aaKnown RBP11.58□□□□□ -0.56
CD44-218ENST00000525469 CACNB1Q02641 598 aaPredicted RBP11.56□□□□□ -0.56
CD44-218ENST00000525469 SLC4A2P04920 1241 aa11.46□□□□□ -0.57
CD44-218ENST00000525469 U3KPZ7 1027 aaPredicted RBP11.43□□□□□ -0.58
CD44-218ENST00000525469 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.41□□□□□ -0.58
CD44-218ENST00000525469 HNRNPUL2Q1KMD3 747 aaKnown RBP11.41□□□□□ -0.58
CD44-218ENST00000525469 APLP2Q06481 763 aa11.39□□□□□ -0.59
CD44-218ENST00000525469 FOXD4L1Q9NU39 408 aa11.35□□□□□ -0.59
CD44-218ENST00000525469 MYCNP04198 464 aaPredicted RBP11.32□□□□□ -0.6
CD44-218ENST00000525469 SAMD1Q6SPF0 538 aaPredicted RBP11.32□□□□□ -0.6
CD44-218ENST00000525469 CAPN15O75808 1086 aa11.21□□□□□ -0.61
CD44-218ENST00000525469 ABCC9O60706 1549 aa11.2□□□□□ -0.62
CD44-218ENST00000525469 ZNF219Q9P2Y4 722 aaPredicted RBP11.17□□□□□ -0.62
CD44-218ENST00000525469 SPINK5Q9NQ38 1064 aaPredicted RBP11.14□□□□□ -0.63
CD44-218ENST00000525469 ZBTB22O15209 634 aa11.11□□□□□ -0.63
CD44-218ENST00000525469 TRHP20396 242 aaPredicted RBP11.09□□□□□ -0.63
CD44-218ENST00000525469 EHMT2Q96KQ7 1210 aa11.02□□□□□ -0.65
CD44-218ENST00000525469 ATXN8OSP0DMR3 200 aa11.01□□□□□ -0.65
CD44-218ENST00000525469 DSG3P32926 999 aa11.01□□□□□ -0.65
CD44-218ENST00000525469 CSRNP3Q8WYN3 585 aa10.92□□□□□ -0.66
CD44-218ENST00000525469 ABCB7O75027 752 aa10.91□□□□□ -0.66
CD44-218ENST00000525469 ATF5Q9Y2D1 282 aaPredicted RBP10.85□□□□□ -0.67
CD44-218ENST00000525469 POLA2Q14181 598 aa10.84□□□□□ -0.67
CD44-218ENST00000525469 ZBTB12Q9Y330 459 aaPredicted RBP10.81□□□□□ -0.68
CD44-218ENST00000525469 CCDC180Q9P1Z9 1646 aa10.77□□□□□ -0.68
CD44-218ENST00000525469 RBM42Q9BTD8 480 aaKnown RBP10.66□□□□□ -0.7
CD44-218ENST00000525469 FBLN2P98095 1184 aa10.64□□□□□ -0.71
CD44-218ENST00000525469 RB1CC1Q8TDY2 1594 aa10.49□□□□□ -0.73
CD44-218ENST00000525469 OSCARQ8IYS5 282 aa10.48□□□□□ -0.73
CD44-218ENST00000525469 SPDYE2BA6NHP3 402 aa10.42□□□□□ -0.74
CD44-218ENST00000525469 SPDYE6P0CI01 402 aa10.42□□□□□ -0.74
CD44-218ENST00000525469 SPDYE2Q495Y8 402 aa10.42□□□□□ -0.74
CD44-218ENST00000525469 AKT1S1Q96B36 256 aa10.41□□□□□ -0.74
CD44-218ENST00000525469 MKRN4PQ13434 485 aaPredicted RBP10.39□□□□□ -0.75
CD44-218ENST00000525469 PABPN1Q86U42 306 aaKnown RBP eCLIP10.37□□□□□ -0.75
CD44-218ENST00000525469 DNAJC5Q9H3Z4 198 aa10.36□□□□□ -0.75
CD44-218ENST00000525469 POTEHQ6S545 545 aa10.32□□□□□ -0.76
CD44-218ENST00000525469 ZNF692Q9BU19 519 aaPredicted RBP10.31□□□□□ -0.76
CD44-218ENST00000525469 NACADO15069 1562 aa10.29□□□□□ -0.76
CD44-218ENST00000525469 UNC13AQ9UPW8 1703 aa10.27□□□□□ -0.77
CD44-218ENST00000525469 SSUH2Q9Y2M2 353 aa10.25□□□□□ -0.77
CD44-218ENST00000525469 DCAF8L2P0C7V8 631 aa10.24□□□□□ -0.77
CD44-218ENST00000525469 REM2Q8IYK8 340 aaPredicted RBP10.24□□□□□ -0.77
CD44-218ENST00000525469 CHRDL2Q6WN34 429 aa10.19□□□□□ -0.78
CD44-218ENST00000525469 SPDYE4A6NLX3 237 aa10.18□□□□□ -0.78
CD44-218ENST00000525469 SPDYE1Q8NFV5 336 aaPredicted RBP10.18□□□□□ -0.78
CD44-218ENST00000525469 CECR2Q9BXF3 1484 aa10.14□□□□□ -0.79
CD44-218ENST00000525469 PITPNM1O00562 1244 aa10.12□□□□□ -0.79
CD44-218ENST00000525469 BICRAQ9NZM4 1560 aa10.12□□□□□ -0.79
CD44-218ENST00000525469 CC2D2AQ9P2K1 1620 aa10.1□□□□□ -0.79
CD44-218ENST00000525469 CLEC11AQ9Y240 323 aa10.09□□□□□ -0.79
CD44-218ENST00000525469 STAG3Q9UJ98 1225 aa10.05□□□□□ -0.8
CD44-218ENST00000525469 PRR29P0C7W0 189 aa9.99□□□□□ -0.81
CD44-218ENST00000525469 FXR2P51116 673 aaKnown RBP eCLIP9.98□□□□□ -0.81
CD44-218ENST00000525469 SHROOM4Q9ULL8 1493 aa9.98□□□□□ -0.81
CD44-218ENST00000525469 FKBP8Q14318 412 aa9.97□□□□□ -0.81
CD44-218ENST00000525469 PIP4P2Q8N4L2 257 aa9.97□□□□□ -0.81
CD44-218ENST00000525469 MYO15BQ96JP2 1530 aa9.95□□□□□ -0.82
CD44-218ENST00000525469 EIF4G1Q04637 1599 aaKnown RBP9.95□□□□□ -0.82
CD44-218ENST00000525469 PROM2Q8N271 834 aa9.93□□□□□ -0.82
CD44-218ENST00000525469 PRKAR2AP13861 404 aaKnown RBP9.9□□□□□ -0.82
CD44-218ENST00000525469 CUX2O14529 1486 aa9.85□□□□□ -0.83
CD44-218ENST00000525469 PLEKHG5O94827 1062 aa9.81□□□□□ -0.84
CD44-218ENST00000525469 FBXO3Q9UK99 471 aa9.8□□□□□ -0.84
CD44-218ENST00000525469 SCRIBQ14160 1630 aa9.79□□□□□ -0.84
CD44-218ENST00000525469 CHADLQ6NUI6 762 aa9.78□□□□□ -0.84
CD44-218ENST00000525469 TRIM41Q8WV44 630 aa9.78□□□□□ -0.84
CD44-218ENST00000525469 HAX1O00165 279 aa9.76□□□□□ -0.85
CD44-218ENST00000525469 ERCC6Q03468 1493 aa9.76□□□□□ -0.85
CD44-218ENST00000525469 CREBZFQ9NS37 354 aa9.73□□□□□ -0.85
CD44-218ENST00000525469 FARP1Q9Y4F1 1045 aaPredicted RBP9.73□□□□□ -0.85
CD44-218ENST00000525469 NPM1P06748 294 aaKnown RBP eCLIP9.72□□□□□ -0.85
CD44-218ENST00000525469 PLCD3Q8N3E9 789 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms