RNA–Protein interactions for RNA: ENST00000524646.1

PKP3-202, Transcript of plakophilin 3, humanhuman

TSL 2

Gene PKP3, Length 312 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-202ENST00000524646 ANP32CO43423 234 aa12.6□□□□□ -0.39
PKP3-202ENST00000524646 ABCC5O15440 1437 aa12.6□□□□□ -0.39
PKP3-202ENST00000524646 TROQ12816 1431 aaPredicted RBP12.6□□□□□ -0.39
PKP3-202ENST00000524646 SYNJ2O15056 1496 aa12.59□□□□□ -0.39
PKP3-202ENST00000524646 ADGRL2O95490 1459 aa12.59□□□□□ -0.39
PKP3-202ENST00000524646 RPRD2Q5VT52 1461 aaKnown RBP12.59□□□□□ -0.39
PKP3-202ENST00000524646 RRP7BPQ9NSQ0 103 aa12.58□□□□□ -0.4
PKP3-202ENST00000524646 CNTLNQ9NXG0 1405 aa12.57□□□□□ -0.4
PKP3-202ENST00000524646 ABCA8O94911 1581 aa12.56□□□□□ -0.4
PKP3-202ENST00000524646 NUP160Q12769 1436 aa12.55□□□□□ -0.4
PKP3-202ENST00000524646 PZPP20742 1482 aa12.55□□□□□ -0.4
PKP3-202ENST00000524646 MBD5Q9P267 1494 aa12.55□□□□□ -0.4
PKP3-202ENST00000524646 SHANK2Q9UPX8 1470 aa12.55□□□□□ -0.4
PKP3-202ENST00000524646 HIRIP3Q9BW71 556 aaPredicted RBP12.54□□□□□ -0.4
PKP3-202ENST00000524646 NCOA1Q15788 1441 aa12.54□□□□□ -0.4
PKP3-202ENST00000524646 ERCC6Q03468 1493 aa12.53□□□□□ -0.4
PKP3-202ENST00000524646 CHIC2Q9UKJ5 165 aa12.53□□□□□ -0.4
PKP3-202ENST00000524646 ANKRD30BQ9BXX2 1392 aa12.53□□□□□ -0.4
PKP3-202ENST00000524646 KDM5DQ9BY66 1539 aa12.52□□□□□ -0.4
PKP3-202ENST00000524646 TRIM52Q96A61 297 aa12.52□□□□□ -0.41
PKP3-202ENST00000524646 GPATCH8Q9UKJ3 1502 aaKnown RBP12.52□□□□□ -0.41
PKP3-202ENST00000524646 MPHOSPH9Q99550 1183 aa12.51□□□□□ -0.41
PKP3-202ENST00000524646 PLB1Q6P1J6 1458 aa12.51□□□□□ -0.41
PKP3-202ENST00000524646 CARMIL2Q6F5E8 1435 aa12.5□□□□□ -0.41
PKP3-202ENST00000524646 PRG4Q92954 1404 aaPredicted RBP12.5□□□□□ -0.41
PKP3-202ENST00000524646 ARHGEF5Q12774 1597 aa12.5□□□□□ -0.41
PKP3-202ENST00000524646 PREX2Q70Z35 1606 aa12.5□□□□□ -0.41
PKP3-202ENST00000524646 NEFLP07196 543 aa12.49□□□□□ -0.41
PKP3-202ENST00000524646 HSPA5P11021 654 aaKnown RBP12.49□□□□□ -0.41
PKP3-202ENST00000524646 CDK11AQ9UQ88 783 aaPredicted RBP12.49□□□□□ -0.41
PKP3-202ENST00000524646 KDM5CP41229 1560 aa12.48□□□□□ -0.41
PKP3-202ENST00000524646 ABCC10Q5T3U5 1492 aa12.48□□□□□ -0.41
PKP3-202ENST00000524646 WASHC2AQ641Q2 1341 aa12.48□□□□□ -0.41
PKP3-202ENST00000524646 CCDC7Q96M83 1385 aa12.47□□□□□ -0.41
PKP3-202ENST00000524646 EIF4G2P78344 907 aaKnown RBP eCLIP12.47□□□□□ -0.41
PKP3-202ENST00000524646 ARHGEF12Q9NZN5 1544 aa12.47□□□□□ -0.41
PKP3-202ENST00000524646 KIAA1107Q9UPP5 1409 aa12.46□□□□□ -0.41
PKP3-202ENST00000524646 ARID3CA6NKF2 412 aa12.46□□□□□ -0.41
PKP3-202ENST00000524646 TSHZ2Q9NRE2 1034 aa12.46□□□□□ -0.41
PKP3-202ENST00000524646 CHD1O14646 1710 aa12.45□□□□□ -0.42
PKP3-202ENST00000524646 BCORL1Q5H9F3 1711 aa12.45□□□□□ -0.42
PKP3-202ENST00000524646 CDC42BPBQ9Y5S2 1711 aa12.45□□□□□ -0.42
PKP3-202ENST00000524646 SPATA31E1Q6ZUB1 1445 aa12.45□□□□□ -0.42
PKP3-202ENST00000524646 E9PCH4 1651 aa12.45□□□□□ -0.42
PKP3-202ENST00000524646 FKBP8Q14318 412 aa12.44□□□□□ -0.42
PKP3-202ENST00000524646 L3MBTL2Q969R5 705 aa12.44□□□□□ -0.42
PKP3-202ENST00000524646 RALGAPBQ86X10 1494 aa12.43□□□□□ -0.42
PKP3-202ENST00000524646 ANKRD30AQ9BXX3 1397 aa12.43□□□□□ -0.42
PKP3-202ENST00000524646 ZNF644Q9H582 1327 aaPredicted RBP12.42□□□□□ -0.42
PKP3-202ENST00000524646 UNC13BO14795 1591 aa12.42□□□□□ -0.42
PKP3-202ENST00000524646 SAMD9LQ8IVG5 1584 aa12.42□□□□□ -0.42
PKP3-202ENST00000524646 MAST1Q9Y2H9 1570 aa12.42□□□□□ -0.42
PKP3-202ENST00000524646 SHROOM2Q13796 1616 aa12.41□□□□□ -0.42
PKP3-202ENST00000524646 C9orf84Q5VXU9 1444 aa12.41□□□□□ -0.42
PKP3-202ENST00000524646 MYO5CQ9NQX4 1742 aa12.4□□□□□ -0.42
PKP3-202ENST00000524646 BCANQ96GW7 911 aa12.4□□□□□ -0.42
PKP3-202ENST00000524646 ANKRD50Q9ULJ7 1429 aa12.39□□□□□ -0.43
PKP3-202ENST00000524646 FOXD1Q16676 465 aa12.39□□□□□ -0.43
PKP3-202ENST00000524646 SLC4A1APQ9BWU0 796 aaKnown RBP12.39□□□□□ -0.43
PKP3-202ENST00000524646 CFDP1Q9UEE9 299 aaPredicted RBP12.39□□□□□ -0.43
PKP3-202ENST00000524646 ATP10BO94823 1461 aa12.39□□□□□ -0.43
PKP3-202ENST00000524646 PLXNC1O60486 1568 aa12.39□□□□□ -0.43
PKP3-202ENST00000524646 UHRF1BP1Q6BDS2 1440 aa12.38□□□□□ -0.43
PKP3-202ENST00000524646 NBPF8Q3BBV2 869 aa12.38□□□□□ -0.43
PKP3-202ENST00000524646 PTPRGP23470 1445 aa12.37□□□□□ -0.43
PKP3-202ENST00000524646 CHMP7Q8WUX9 453 aaPredicted RBP12.37□□□□□ -0.43
PKP3-202ENST00000524646 CCDC141Q6ZP82 1450 aa12.37□□□□□ -0.43
PKP3-202ENST00000524646 LAMC1P11047 1609 aa12.37□□□□□ -0.43
PKP3-202ENST00000524646 TTC37Q6PGP7 1564 aa12.36□□□□□ -0.43
PKP3-202ENST00000524646 HNRNPUQ00839 825 aaKnown RBP eCLIP12.36□□□□□ -0.43
PKP3-202ENST00000524646 TRPM1Q7Z4N2 1603 aa12.36□□□□□ -0.43
PKP3-202ENST00000524646 KIF7Q2M1P5 1343 aa12.36□□□□□ -0.43
PKP3-202ENST00000524646 IQGAP3Q86VI3 1631 aa12.35□□□□□ -0.43
PKP3-202ENST00000524646 USP47Q96K76 1375 aa12.34□□□□□ -0.43
PKP3-202ENST00000524646 PRKRIP1Q9H875 184 aaPredicted RBP12.33□□□□□ -0.44
PKP3-202ENST00000524646 SYCP2Q9BX26 1530 aa12.32□□□□□ -0.44
PKP3-202ENST00000524646 FAM135AQ9P2D6 1515 aa12.32□□□□□ -0.44
PKP3-202ENST00000524646 C11orf95C9JLR9 678 aaPredicted RBP12.32□□□□□ -0.44
PKP3-202ENST00000524646 EIF2AK4Q9P2K8 1649 aaKnown RBP12.32□□□□□ -0.44
PKP3-202ENST00000524646 DHX29Q7Z478 1369 aaKnown RBP12.31□□□□□ -0.44
PKP3-202ENST00000524646 JPH4Q96JJ6 628 aa12.31□□□□□ -0.44
PKP3-202ENST00000524646 ZBED9Q6R2W3 1325 aa12.31□□□□□ -0.44
PKP3-202ENST00000524646 KIF15Q9NS87 1388 aa12.3□□□□□ -0.44
PKP3-202ENST00000524646 RNF17Q9BXT8 1623 aaKnown RBP12.3□□□□□ -0.44
PKP3-202ENST00000524646 ARID4BQ4LE39 1312 aaPredicted RBP12.3□□□□□ -0.44
PKP3-202ENST00000524646 ROCK2O75116 1388 aaKnown RBP12.3□□□□□ -0.44
PKP3-202ENST00000524646 ABCC2Q92887 1545 aa12.29□□□□□ -0.44
PKP3-202ENST00000524646 ZNF777Q9ULD5 760 aaPredicted RBP12.29□□□□□ -0.44
PKP3-202ENST00000524646 MAGI2Q86UL8 1455 aa12.28□□□□□ -0.44
PKP3-202ENST00000524646 PLEKHD1A6NEE1 506 aa12.28□□□□□ -0.44
PKP3-202ENST00000524646 PKD2Q13563 968 aa12.28□□□□□ -0.44
PKP3-202ENST00000524646 ERICH6BQ5W0A0 696 aa12.28□□□□□ -0.44
PKP3-202ENST00000524646 MRS2Q9HD23 443 aa12.28□□□□□ -0.44
PKP3-202ENST00000524646 ARHGAP5Q13017 1502 aa12.27□□□□□ -0.44
PKP3-202ENST00000524646 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.27□□□□□ -0.44
PKP3-202ENST00000524646 NUP155O75694 1391 aa12.27□□□□□ -0.45
PKP3-202ENST00000524646 PLEKHH2Q8IVE3 1493 aa12.27□□□□□ -0.45
PKP3-202ENST00000524646 FBLN2P98095 1184 aa12.26□□□□□ -0.45
PKP3-202ENST00000524646 CCDC184Q52MB2 194 aa12.26□□□□□ -0.45
PKP3-202ENST00000524646 ZCCHC11Q5TAX3 1644 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms