RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 ANP32CO43423 234 aa11.5□□□□□ -0.57
CSMD1-213ENST00000523488 EIF5BO60841 1220 aaKnown RBP11.5□□□□□ -0.57
CSMD1-213ENST00000523488 IGF1RP08069 1367 aa11.5□□□□□ -0.57
CSMD1-213ENST00000523488 RPRD2Q5VT52 1461 aaKnown RBP11.49□□□□□ -0.57
CSMD1-213ENST00000523488 DNMT1P26358 1616 aaKnown RBP11.49□□□□□ -0.57
CSMD1-213ENST00000523488 CLASP1Q7Z460 1538 aa11.49□□□□□ -0.57
CSMD1-213ENST00000523488 CEP170Q5SW79 1584 aa11.47□□□□□ -0.57
CSMD1-213ENST00000523488 ABCA10Q8WWZ4 1543 aa11.46□□□□□ -0.57
CSMD1-213ENST00000523488 SHROOM2Q13796 1616 aa11.46□□□□□ -0.57
CSMD1-213ENST00000523488 KDM5DQ9BY66 1539 aa11.46□□□□□ -0.58
CSMD1-213ENST00000523488 CCDC7Q96M83 1385 aa11.45□□□□□ -0.58
CSMD1-213ENST00000523488 ADCY10Q96PN6 1610 aa11.45□□□□□ -0.58
CSMD1-213ENST00000523488 MAGI3Q5TCQ9 1506 aa11.45□□□□□ -0.58
CSMD1-213ENST00000523488 UHRF1BP1Q6BDS2 1440 aa11.44□□□□□ -0.58
CSMD1-213ENST00000523488 ARID4BQ4LE39 1312 aaPredicted RBP11.43□□□□□ -0.58
CSMD1-213ENST00000523488 ARHGEF12Q9NZN5 1544 aa11.43□□□□□ -0.58
CSMD1-213ENST00000523488 KTN1Q86UP2 1357 aaKnown RBP11.43□□□□□ -0.58
CSMD1-213ENST00000523488 FMN1Q68DA7 1419 aa11.43□□□□□ -0.58
CSMD1-213ENST00000523488 IL27Q8NEV9 243 aa11.43□□□□□ -0.58
CSMD1-213ENST00000523488 MS4A1P11836 297 aa11.42□□□□□ -0.58
CSMD1-213ENST00000523488 ANP32AP39687 249 aaKnown RBP11.42□□□□□ -0.58
CSMD1-213ENST00000523488 DNMBPQ6XZF7 1577 aa11.41□□□□□ -0.58
CSMD1-213ENST00000523488 ROCK1Q13464 1354 aa11.4□□□□□ -0.58
CSMD1-213ENST00000523488 ZNF608Q9ULD9 1512 aaPredicted RBP11.4□□□□□ -0.58
CSMD1-213ENST00000523488 ZBTB47Q9UFB7 747 aaPredicted RBP11.4□□□□□ -0.58
CSMD1-213ENST00000523488 HNRNPUQ00839 825 aaKnown RBP eCLIP11.39□□□□□ -0.59
CSMD1-213ENST00000523488 ATP1B4Q9UN42 357 aaPredicted RBP11.39□□□□□ -0.59
CSMD1-213ENST00000523488 PRKRIP1Q9H875 184 aaPredicted RBP11.38□□□□□ -0.59
CSMD1-213ENST00000523488 ITSN2Q9NZM3 1697 aa11.38□□□□□ -0.59
CSMD1-213ENST00000523488 PLEKHH2Q8IVE3 1493 aa11.38□□□□□ -0.59
CSMD1-213ENST00000523488 SIN3AQ96ST3 1273 aa11.36□□□□□ -0.59
CSMD1-213ENST00000523488 PLXNC1O60486 1568 aa11.36□□□□□ -0.59
CSMD1-213ENST00000523488 BLMP54132 1417 aaPredicted RBP11.36□□□□□ -0.59
CSMD1-213ENST00000523488 ADGRL2O95490 1459 aa11.36□□□□□ -0.59
CSMD1-213ENST00000523488 RNF17Q9BXT8 1623 aaKnown RBP11.35□□□□□ -0.59
CSMD1-213ENST00000523488 RALGAPBQ86X10 1494 aa11.35□□□□□ -0.59
CSMD1-213ENST00000523488 NESP48681 1621 aa11.35□□□□□ -0.59
CSMD1-213ENST00000523488 TRPM1Q7Z4N2 1603 aa11.35□□□□□ -0.59
CSMD1-213ENST00000523488 ANKRD30BQ9BXX2 1392 aa11.34□□□□□ -0.59
CSMD1-213ENST00000523488 FAM43AQ8N2R8 423 aa11.34□□□□□ -0.59
CSMD1-213ENST00000523488 B4GALNT3Q6L9W6 998 aa11.33□□□□□ -0.6
CSMD1-213ENST00000523488 NUDCQ9Y266 331 aa11.33□□□□□ -0.6
CSMD1-213ENST00000523488 NLRP1Q9C000 1473 aa11.33□□□□□ -0.6
CSMD1-213ENST00000523488 SCAPERQ9BY12 1400 aa11.33□□□□□ -0.6
CSMD1-213ENST00000523488 ZMYM3Q14202 1370 aa11.33□□□□□ -0.6
CSMD1-213ENST00000523488 HIRIP3Q9BW71 556 aaPredicted RBP11.32□□□□□ -0.6
CSMD1-213ENST00000523488 WDR62O43379 1518 aa11.32□□□□□ -0.6
CSMD1-213ENST00000523488 TCERG1O14776 1098 aaKnown RBP11.32□□□□□ -0.6
CSMD1-213ENST00000523488 RSPH6AQ9H0K4 717 aa11.32□□□□□ -0.6
CSMD1-213ENST00000523488 TONSLQ96HA7 1378 aa11.32□□□□□ -0.6
CSMD1-213ENST00000523488 BACH2Q9BYV9 841 aa11.32□□□□□ -0.6
CSMD1-213ENST00000523488 ABCC2Q92887 1545 aa11.32□□□□□ -0.6
CSMD1-213ENST00000523488 ABCC10Q5T3U5 1492 aa11.31□□□□□ -0.6
CSMD1-213ENST00000523488 PZPP20742 1482 aa11.31□□□□□ -0.6
CSMD1-213ENST00000523488 CCDC184Q52MB2 194 aa11.3□□□□□ -0.6
CSMD1-213ENST00000523488 ROCK2O75116 1388 aaKnown RBP11.3□□□□□ -0.6
CSMD1-213ENST00000523488 PPM1GO15355 546 aaPredicted RBP11.3□□□□□ -0.6
CSMD1-213ENST00000523488 LAMC3Q9Y6N6 1575 aa11.29□□□□□ -0.6
CSMD1-213ENST00000523488 CARMIL1Q5VZK9 1371 aa11.29□□□□□ -0.6
CSMD1-213ENST00000523488 CENPJQ9HC77 1338 aaPredicted RBP11.27□□□□□ -0.61
CSMD1-213ENST00000523488 EIF4G3O43432 1585 aaKnown RBP11.27□□□□□ -0.61
CSMD1-213ENST00000523488 IQGAP2Q13576 1575 aa11.27□□□□□ -0.61
CSMD1-213ENST00000523488 PKNOX2Q96KN3 472 aa11.27□□□□□ -0.61
CSMD1-213ENST00000523488 NEFMP07197 916 aa11.26□□□□□ -0.61
CSMD1-213ENST00000523488 KDM2BQ8NHM5 1336 aa11.26□□□□□ -0.61
CSMD1-213ENST00000523488 NPM2Q86SE8 214 aaKnown RBP11.26□□□□□ -0.61
CSMD1-213ENST00000523488 HSPA5P11021 654 aaKnown RBP11.26□□□□□ -0.61
CSMD1-213ENST00000523488 GLIPR1L2Q4G1C9 344 aa11.26□□□□□ -0.61
CSMD1-213ENST00000523488 BRD4O60885 1362 aaPredicted RBP11.25□□□□□ -0.61
CSMD1-213ENST00000523488 PBRM1Q86U86 1689 aa11.25□□□□□ -0.61
CSMD1-213ENST00000523488 EPRSP07814 1512 aaKnown RBP11.24□□□□□ -0.61
CSMD1-213ENST00000523488 CDC42BPAQ5VT25 1732 aa11.24□□□□□ -0.61
CSMD1-213ENST00000523488 ARHGAP31Q2M1Z3 1444 aa11.24□□□□□ -0.61
CSMD1-213ENST00000523488 LAS1LQ9Y4W2 734 aaKnown RBP11.24□□□□□ -0.61
CSMD1-213ENST00000523488 PRDM15P57071 1507 aaPredicted RBP11.24□□□□□ -0.61
CSMD1-213ENST00000523488 GSE1Q14687 1217 aa11.23□□□□□ -0.61
CSMD1-213ENST00000523488 MYO5CQ9NQX4 1742 aa11.23□□□□□ -0.61
CSMD1-213ENST00000523488 PTPRGP23470 1445 aa11.22□□□□□ -0.61
CSMD1-213ENST00000523488 KIF7Q2M1P5 1343 aa11.22□□□□□ -0.61
CSMD1-213ENST00000523488 PARD3Q8TEW0 1356 aa11.22□□□□□ -0.61
CSMD1-213ENST00000523488 MYOM1P52179 1685 aa11.21□□□□□ -0.62
CSMD1-213ENST00000523488 SHANK2Q9UPX8 1470 aa11.21□□□□□ -0.62
CSMD1-213ENST00000523488 TARBP1Q13395 1621 aaKnown RBP11.21□□□□□ -0.62
CSMD1-213ENST00000523488 PNISRQ8TF01 805 aaKnown RBP11.21□□□□□ -0.62
CSMD1-213ENST00000523488 IQGAP1P46940 1657 aa11.21□□□□□ -0.62
CSMD1-213ENST00000523488 FHOD3Q2V2M9 1422 aa11.2□□□□□ -0.62
CSMD1-213ENST00000523488 NEURL4Q96JN8 1562 aa11.19□□□□□ -0.62
CSMD1-213ENST00000523488 CAMSAP2Q08AD1 1489 aa11.18□□□□□ -0.62
CSMD1-213ENST00000523488 UNC13BO14795 1591 aa11.18□□□□□ -0.62
CSMD1-213ENST00000523488 DAPK1P53355 1430 aa11.18□□□□□ -0.62
CSMD1-213ENST00000523488 PDE4AP27815 886 aa11.17□□□□□ -0.62
CSMD1-213ENST00000523488 EIF4G2P78344 907 aaKnown RBP eCLIP11.17□□□□□ -0.62
CSMD1-213ENST00000523488 PDE3BQ13370 1112 aa11.17□□□□□ -0.62
CSMD1-213ENST00000523488 DDRGK1Q96HY6 314 aa11.17□□□□□ -0.62
CSMD1-213ENST00000523488 BRPF3Q9ULD4 1205 aa11.17□□□□□ -0.62
CSMD1-213ENST00000523488 POLA1P09884 1462 aaPredicted RBP11.17□□□□□ -0.62
CSMD1-213ENST00000523488 FAM9BQ8IZU0 186 aa11.16□□□□□ -0.62
CSMD1-213ENST00000523488 TOPBP1Q92547 1522 aa11.16□□□□□ -0.62
CSMD1-213ENST00000523488 RRP1P56182 461 aaKnown RBP11.16□□□□□ -0.62
CSMD1-213ENST00000523488 EIF2AK4Q9P2K8 1649 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms